Emergence of scaling in random networks

Barabasi ¹, Albert

Affiliations

¹ Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA.

PMID: 10521342
2427 citations

Abstract

Systems as diverse as genetic networks or the World Wide Web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This feature was found to be a consequence of two generic mechanisms: (i) networks expand continuously by the addition of new vertices, and (ii) new vertices attach preferentially to sites that are already well connected. A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.

Other Links

Full text on Science (New York, N.Y.)

Cited By

Citedby
Classes of small-world networks. L A Amaral, A Scala, M Barthelemy, H E Stanley. Proc Natl Acad Sci U S A, 2000 Sep 27; 97(21). PMID: 11005838 Free PMC article. Highly Cited.
The structure of scientific collaboration networks. M E Newman. Proc Natl Acad Sci U S A, 2001 Jan 10; 98(2). PMID: 11149952 Free PMC article. Highly Cited.
A model for the emergence of cooperation, interdependence, and structure in evolving networks. S Jain, S Krishna. Proc Natl Acad Sci U S A, 2001 Jan 10; 98(2). PMID: 11149953 Free PMC article.
The small world of human language. R Ferrer I Cancho, R V Solé. Proc Biol Sci, 2001 Oct 25; 268(1482). PMID: 11674874 Free PMC article.
Probabilistic prediction of unknown metabolic and signal-transduction networks. S M Gomez, S H Lo, A Rzhetsky. Genetics, 2001 Dec 01; 159(3). PMID: 11729170 Free PMC article.
Language as an evolving word web. S N Dorogovtsev, J F Mendes. Proc Biol Sci, 2001 Dec 26; 268(1485). PMID: 11749717 Free PMC article.
Estimating coarse gene network structure from large-scale gene perturbation data. Andreas Wagner. Genome Res, 2002 Feb 06; 12(2). PMID: 11827950 Free PMC article.
Large extinctions in an evolutionary model: the role of innovation and keystone species. Sanjay Jain, Sandeep Krishna. Proc Natl Acad Sci U S A, 2002 Feb 14; 99(4). PMID: 11842190 Free PMC article.
Random graph models of social networks. M E J Newman, D J Watts, S H Strogatz. Proc Natl Acad Sci U S A, 2002 Mar 05; 99 Suppl 1. PMID: 11875211 Free PMC article.
Curvature of co-links uncovers hidden thematic layers in the World Wide Web. Jean-Pierre Eckmann, Elisha Moses. Proc Natl Acad Sci U S A, 2002 Apr 25; 99(9). PMID: 11972019 Free PMC article.
The identification of functional modules from the genomic association of genes. Berend Snel, Peer Bork, Martijn A Huynen. Proc Natl Acad Sci U S A, 2002 May 02; 99(9). PMID: 11983890 Free PMC article.
Community structure in social and biological networks. M Girvan, M E J Newman. Proc Natl Acad Sci U S A, 2002 Jun 13; 99(12). PMID: 12060727 Free PMC article. Highly Cited. Review.
Topological determinants of protein folding. Nikolay V Dokholyan, Lewyn Li, Feng Ding, Eugene I Shakhnovich. Proc Natl Acad Sci U S A, 2002 Jun 27; 99(13). PMID: 12084924 Free PMC article.
The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties. Nicholas M Luscombe, Jiang Qian, +2 authors, Zhaolei Zhang, Ted Johnson, Mark Gerstein. less Genome Biol, 2002 Aug 21; 3(8). PMID: 12186647 Free PMC article.
Food-web structure and network theory: The role of connectance and size. Jennifer A Dunne, Richard J Williams, Neo D Martinez. Proc Natl Acad Sci U S A, 2002 Sep 18; 99(20). PMID: 12235364 Free PMC article. Highly Cited.
Classification of scale-free networks. Kwang-Il Goh, Eulsik Oh, +2 authors, Hawoong Jeong, Byungnam Kahng, Doochul Kim. less Proc Natl Acad Sci U S A, 2002 Sep 20; 99(20). PMID: 12239345 Free PMC article.
Modeling the Internet's large-scale topology. Soon-Hyung Yook, Hawoong Jeong, Albert-Laszlo Barabasi. Proc Natl Acad Sci U S A, 2002 Oct 09; 99(21). PMID: 12368484 Free PMC article.
Birth and death of protein domains: a simple model of evolution explains power law behavior. Georgy P Karev, Yuri I Wolf, +2 authors, Eugene V Koonin. less BMC Evol Biol, 2002 Oct 16; 2. PMID: 12379152 Free PMC article.
Growing and navigating the small world Web by local content. Filippo Menczer. Proc Natl Acad Sci U S A, 2002 Oct 17; 99(22). PMID: 12381792 Free PMC article.
Expanding protein universe and its origin from the biological Big Bang. Nikolay V Dokholyan, Boris Shakhnovich, Eugene I Shakhnovich. Proc Natl Acad Sci U S A, 2002 Oct 18; 99(22). PMID: 12384571 Free PMC article.
The society of genes: networks of functional links between genes from comparative genomics. Itai Yanai, Charles DeLisi. Genome Biol, 2002 Nov 14; 3(11). PMID: 12429063 Free PMC article.
The average distances in random graphs with given expected degrees. Fan Chung, Linyuan Lu. Proc Natl Acad Sci U S A, 2002 Dec 06; 99(25). PMID: 12466502 Free PMC article.
An automated method for finding molecular complexes in large protein interaction networks. Gary D Bader, Christopher W V Hogue. BMC Bioinformatics, 2003 Jan 15; 4. PMID: 12525261 Free PMC article. Highly Cited.
Small worlds in RNA structures. Stefan Wuchty. Nucleic Acids Res, 2003 Feb 01; 31(3). PMID: 12560509 Free PMC article.
How the global structure of protein interaction networks evolves. Andreas Wagner. Proc Biol Sci, 2003 Mar 19; 270(1514). PMID: 12641899 Free PMC article.
Assessing experimentally derived interactions in a small world. Debra S Goldberg, Frederick P Roth. Proc Natl Acad Sci U S A, 2003 Apr 05; 100(8). PMID: 12676999 Free PMC article. Highly Cited.
Spectra of random graphs with given expected degrees. Fan Chung, Linyuan Lu, Van Vu. Proc Natl Acad Sci U S A, 2003 May 14; 100(11). PMID: 12743375 Free PMC article.
An assessment of preferential attachment as a mechanism for human sexual network formation. James Holland Jones, Mark S Handcock. Proc Biol Sci, 2003 Jun 21; 270(1520). PMID: 12816649 Free PMC article.
The organization of the microbial biodegradation network from a systems-biology perspective. Florencio Pazos, Alfonso Valencia, Víctor De Lorenzo. EMBO Rep, 2003 Sep 16; 4(10). PMID: 12973298 Free PMC article.
Functional modules by relating protein interaction networks and gene expression. Sabine Tornow, H W Mewes. Nucleic Acids Res, 2003 Oct 25; 31(21). PMID: 14576317 Free PMC article.
Protein evolution within a structural space. Eric J Deeds, Nikolay V Dokholyan, Eugene I Shakhnovich. Biophys J, 2003 Oct 29; 85(5). PMID: 14581198 Free PMC article.
The emergent properties of a dolphin social network. David Lusseau. Proc Biol Sci, 2003 Dec 12; 270 Suppl 2. PMID: 14667378 Free PMC article.
Flux coupling analysis of genome-scale metabolic network reconstructions. Anthony P Burgard, Evgeni V Nikolaev, Christophe H Schilling, Costas D Maranas. Genome Res, 2004 Jan 14; 14(2). PMID: 14718379 Free PMC article. Highly Cited.
TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. Haiyuan Yu, Xiaowei Zhu, +2 authors, Dov Greenbaum, John Karro, Mark Gerstein. less Nucleic Acids Res, 2004 Jan 16; 32(1). PMID: 14724320 Free PMC article.
The distribution of online healthcare information: a case study on melanoma. Suresh K Bhavnani. AMIA Annu Symp Proc, 2004 Jan 20;. PMID: 14728138 Free PMC article.
Similarities and differences in genome-wide expression data of six organisms. Sven Bergmann, Jan Ihmels, Naama Barkai. PLoS Biol, 2004 Jan 23; 2(1). PMID: 14737187 Free PMC article. Highly Cited.
The rise and fall of a networked society: a formal model. Matteo Marsili, Fernando Vega-Redondo, Frantisek Slanina. Proc Natl Acad Sci U S A, 2004 Jan 28; 101(6). PMID: 14745030 Free PMC article.
Extracting knowledge from the World Wide Web. Monika Henzinger, Steve Lawrence. Proc Natl Acad Sci U S A, 2004 Jan 28; 101 Suppl 1. PMID: 14745041 Free PMC article.
Coauthorship networks and patterns of scientific collaboration. M E J Newman. Proc Natl Acad Sci U S A, 2004 Jan 28; 101 Suppl 1. PMID: 14745042 Free PMC article. Highly Cited.
Evolution of document networks. Filippo Menczer. Proc Natl Acad Sci U S A, 2004 Jan 30; 101 Suppl 1. PMID: 14747653 Free PMC article.
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model. Vera van Noort, Berend Snel, Martijn A Huynen. EMBO Rep, 2004 Feb 18; 5(3). PMID: 14968131 Free PMC article.
The simultaneous evolution of author and paper networks. Katy Börner, Jeegar T Maru, Robert L Goldstone. Proc Natl Acad Sci U S A, 2004 Feb 21; 101 Suppl 1. PMID: 14976254 Free PMC article.
The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks. Ariel Fernández, Ridgway Scott, R Stephen Berry. Proc Natl Acad Sci U S A, 2004 Feb 24; 101(9). PMID: 14978274 Free PMC article.
The architecture of complex weighted networks. A Barrat, M Barthélemy, R Pastor-Satorras, A Vespignani. Proc Natl Acad Sci U S A, 2004 Mar 10; 101(11). PMID: 15007165 Free PMC article. Highly Cited. Review.
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network. Radu Dobrin, Qasim K Beg, Albert-László Barabási, Zoltán N Oltvai. BMC Bioinformatics, 2004 Mar 17; 5. PMID: 15018656 Free PMC article.
Molecular evolution in large genetic networks: does connectivity equal constraint? Matthew W Hahn, Gavin C Conant, Andreas Wagner. J Mol Evol, 2004 Mar 26; 58(2). PMID: 15042341
Taking the mystery out of biological networks. Patrick Aloy, Robert B Russell. EMBO Rep, 2004 Apr 03; 5(4). PMID: 15060570 Free PMC article.
Response of complex networks to stimuli. Yaneer Bar-Yam, Irving R Epstein. Proc Natl Acad Sci U S A, 2004 Apr 09; 101(13). PMID: 15070719 Free PMC article.
Coexpression analysis of human genes across many microarray data sets. Homin K Lee, Amy K Hsu, +2 authors, Jon Sajdak, Jie Qin, Paul Pavlidis. less Genome Res, 2004 Jun 03; 14(6). PMID: 15173114 Free PMC article. Highly Cited.
Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics. Artem Cherkasov, Shannan J Ho Sui, Robert C Brunham, Steven J M Jones. BMC Bioinformatics, 2004 Jul 28; 5. PMID: 15274750 Free PMC article.
Efficient system-wide coordination in noisy environments. André A Moreira, Abhishek Mathur, Daniel Diermeier, Luís A N Amaral. Proc Natl Acad Sci U S A, 2004 Aug 07; 101(33). PMID: 15297617 Free PMC article.
Random drift and culture change. R Alexander Bentley, Matthew W Hahn, Stephen J Shennan. Proc Biol Sci, 2004 Aug 13; 271(1547). PMID: 15306315 Free PMC article.
Connectivity and dynamics of neural information processing. Viktor K Jirsa. Neuroinformatics, 2004 Aug 21; 2(2). PMID: 15319516 Review.
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models. Georgy P Karev, Yuri I Wolf, Faina S Berezovskaya, Eugene V Koonin. BMC Evol Biol, 2004 Sep 11; 4. PMID: 15357876 Free PMC article.
Clustered organization of cortical connectivity. Claus C Hilgetag, Marcus Kaiser. Neuroinformatics, 2004 Sep 15; 2(3). PMID: 15365196 Review.
Modularity from fluctuations in random graphs and complex networks. Roger Guimerà, Marta Sales-Pardo, Luís A Nunes Amaral. Phys Rev E Stat Nonlin Soft Matter Phys, 2004 Sep 28; 70(2 Pt 2). PMID: 15447530 Free PMC article.
Polynomial epidemics and clustering in contact networks. Balázs Szendroi, Gábor Csányi. Proc Biol Sci, 2004 Oct 27; 271 Suppl 5. PMID: 15504019 Free PMC article.
Scale-free networks versus evolutionary drift. Teresa M Przytycka, Yi-Kuo Yu. Comput Biol Chem, 2004 Nov 19; 28(4). PMID: 15548452 Free PMC article.
Discriminative topological features reveal biological network mechanisms. Manuel Middendorf, Etay Ziv, +6 authors, Chris Wiggins. less BMC Bioinformatics, 2004 Nov 24; 5. PMID: 15555081 Free PMC article.
The topological relationship between the large-scale attributes and local interaction patterns of complex networks. A Vázquez, R Dobrin, +3 authors, D Sergi, J-P Eckmann, Z N Oltvai, A-L Barabási. less Proc Natl Acad Sci U S A, 2004 Dec 16; 101(52). PMID: 15598746 Free PMC article.
Clustering under the line graph transformation: application to reaction network. Jose C Nacher, Nobuhisa Ueda, +2 authors, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu. less BMC Bioinformatics, 2004 Dec 25; 5. PMID: 15617578 Free PMC article.
Inferring network mechanisms: the Drosophila melanogaster protein interaction network. Manuel Middendorf, Etay Ziv, Chris H Wiggins. Proc Natl Acad Sci U S A, 2005 Feb 25; 102(9). PMID: 15728374 Free PMC article.
Highly nonrandom features of synaptic connectivity in local cortical circuits. Sen Song, Per Jesper Sjöström, +2 authors, Markus Reigl, Sacha Nelson, Dmitri B Chklovskii. less PLoS Biol, 2005 Mar 02; 3(3). PMID: 15737062 Free PMC article. Highly Cited.
Subnets of scale-free networks are not scale-free: sampling properties of networks. Michael P H Stumpf, Carsten Wiuf, Robert M May. Proc Natl Acad Sci U S A, 2005 Mar 16; 102(12). PMID: 15767579 Free PMC article.
Evolutionary cores of domain co-occurrence networks. Stefan Wuchty, Eivind Almaas. BMC Evol Biol, 2005 Mar 25; 5. PMID: 15788102 Free PMC article.
Identifying the role that animals play in their social networks. David Lusseau, M E J Newman. Proc Biol Sci, 2005 Apr 02; 271 Suppl 6. PMID: 15801609 Free PMC article.
The emergence of scaling in sequence-based physical models of protein evolution. Eric J Deeds, Eugene I Shakhnovich. Biophys J, 2005 Apr 05; 88(6). PMID: 15805176 Free PMC article.
Promiscuous drugs compared to selective drugs (promiscuity can be a virtue). Simon K Mencher, Long G Wang. BMC Clin Pharmacol, 2005 Apr 28; 5. PMID: 15854222 Free PMC article. Review.
Team assembly mechanisms determine collaboration network structure and team performance. Roger Guimerà, Brian Uzzi, Jarrett Spiro, Luís A Nunes Amaral. Science, 2005 Apr 30; 308(5722). PMID: 15860629 Free PMC article.
Toward predictive models of mammalian cells. Avi Ma'ayan, Robert D Blitzer, Ravi Iyengar. Annu Rev Biophys Biomol Struct, 2005 May 05; 34. PMID: 15869393 Free PMC article. Review.
Information network topologies for enhanced local adaptive management. Orjan Bodin, Jon Norberg. Environ Manage, 2005 May 20; 35(2). PMID: 15902456
The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles. R Guimerà, S Mossa, A Turtschi, L A N Amaral. Proc Natl Acad Sci U S A, 2005 May 25; 102(22). PMID: 15911778 Free PMC article. Highly Cited.
Application of network theory to potential mycorrhizal networks. D Southworth, X-H He, +2 authors, W Swenson, C S Bledsoe, W R Horwath. less Mycorrhiza, 2005 Jul 06; 15(8). PMID: 15997390
Synchronous neural activity in scale-free network models versus random network models. Geoffrey Grinstein, Ralph Linsker. Proc Natl Acad Sci U S A, 2005 Jul 07; 102(28). PMID: 15998732 Free PMC article.
The evolution of connectivity in metabolic networks. Thomas Pfeiffer, Orkun S Soyer, Sebastian Bonhoeffer. PLoS Biol, 2005 Jul 08; 3(7). PMID: 16000019 Free PMC article.
Dynamic pattern evolution on scale-free networks. Haijun Zhou, Reinhard Lipowsky. Proc Natl Acad Sci U S A, 2005 Jul 12; 102(29). PMID: 16006533 Free PMC article.
A tool for filtering information in complex systems. M Tumminello, T Aste, T Di Matteo, R N Mantegna. Proc Natl Acad Sci U S A, 2005 Jul 20; 102(30). PMID: 16027373 Free PMC article.
High-betweenness proteins in the yeast protein interaction network. Maliackal Poulo Joy, Amy Brock, Donald E Ingber, Sui Huang. J Biomed Biotechnol, 2005 Jul 28; 2005(2). PMID: 16046814 Free PMC article. Highly Cited.
Geographic routing in social networks. David Liben-Nowell, Jasmine Novak, +2 authors, Ravi Kumar, Prabhakar Raghavan, Andrew Tomkins. less Proc Natl Acad Sci U S A, 2005 Aug 06; 102(33). PMID: 16081538 Free PMC article.
Formation of regulatory patterns during signal propagation in a Mammalian cellular network. Avi Ma'ayan, Sherry L Jenkins, +11 authors, Ravi Iyengar. less Science, 2005 Aug 16; 309(5737). PMID: 16099987 Free PMC article. Highly Cited.
Effect of dataset selection on the topological interpretation of protein interaction networks. Luke Hakes, David L Robertson, Stephen G Oliver. BMC Genomics, 2005 Sep 22; 6. PMID: 16174296 Free PMC article.
The "robust yet fragile" nature of the Internet. John C Doyle, David L Alderson, +5 authors, Walter Willinger. less Proc Natl Acad Sci U S A, 2005 Oct 06; 102(41). PMID: 16204384 Free PMC article.
SpectralNET--an application for spectral graph analysis and visualization. Joshua J Forman, Paul A Clemons, Stuart L Schreiber, Stephen J Haggarty. BMC Bioinformatics, 2005 Oct 21; 6. PMID: 16236170 Free PMC article.
Preferential attachment in the evolution of metabolic networks. Sara Light, Per Kraulis, Arne Elofsson. BMC Genomics, 2005 Nov 12; 6. PMID: 16281983 Free PMC article.
The yeast kinome displays scale free topology with functional hub clusters. Robin E C Lee, Lynn A Megeney. BMC Bioinformatics, 2005 Nov 15; 6. PMID: 16283924 Free PMC article.
Gene duplication and the properties of biological networks. Austin L Hughes, Robert Friedman. J Mol Evol, 2005 Nov 30; 61(6). PMID: 16315107 Free PMC article.
A simple physical model for scaling in protein-protein interaction networks. Eric J Deeds, Orr Ashenberg, Eugene I Shakhnovich. Proc Natl Acad Sci U S A, 2005 Dec 31; 103(2). PMID: 16384916 Free PMC article.
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. Wen-Yu Chung, Reka Albert, +2 authors, Istvan Albert, Anton Nekrutenko, Kateryna D Makova. less BMC Bioinformatics, 2006 Jan 31; 7. PMID: 16441884 Free PMC article.
Stable evolutionary signal in a yeast protein interaction network. Stefan Wuchty, Albert-Laszlo Barabási, Michael T Ferdig. BMC Evol Biol, 2006 Jan 31; 6. PMID: 16441898 Free PMC article.
Graph topology plays a determinant role in the evolution of cooperation. F C Santos, J F Rodrigues, J M Pacheco. Proc Biol Sci, 2006 Mar 08; 273(1582). PMID: 16519234 Free PMC article.
The origins and evolution of functional modules: lessons from protein complexes. Jose B Pereira-Leal, Emmanuel D Levy, Sarah A Teichmann. Philos Trans R Soc Lond B Biol Sci, 2006 Mar 10; 361(1467). PMID: 16524839 Free PMC article. Review.
Protein protein interactions, evolutionary rate, abundance and age. Ramazan Saeed, Charlotte M Deane. BMC Bioinformatics, 2006 Mar 15; 7. PMID: 16533385 Free PMC article.
Functional partitioning of yeast co-expression networks after genome duplication. Gavin C Conant, Kenneth H Wolfe. PLoS Biol, 2006 Mar 25; 4(4). PMID: 16555924 Free PMC article.
Protein interaction networks in plants. Joachim F Uhrig. Planta, 2006 Apr 01; 224(4). PMID: 16575597 Review.
Winners don't take all: Characterizing the competition for links on the web. David M Pennock, Gary W Flake, +2 authors, Steve Lawrence, Eric J Glover, C Lee Giles. less Proc Natl Acad Sci U S A, 2006 Apr 01; 99(8). PMID: 16578867 Free PMC article.
Graph theoretical insights into evolution of multidomain proteins. Teresa Przytycka, George Davis, Nan Song, Dannie Durand. J Comput Biol, 2006 Apr 07; 13(2). PMID: 16597245 Free PMC article.
Large-scale identification of protein-protein interaction of Escherichia coli K-12. Mohammad Arifuzzaman, Maki Maeda, +20 authors, Hirotada Mori. less Genome Res, 2006 Apr 12; 16(5). PMID: 16606699 Free PMC article. Highly Cited.
The brainstem reticular formation is a small-world, not scale-free, network. M D Humphries, K Gurney, T J Prescott. Proc Biol Sci, 2006 Apr 18; 273(1585). PMID: 16615219 Free PMC article. Highly Cited.
Exploration of biological network centralities with CentiBiN. Björn H Junker, Dirk Koschützki, Falk Schreiber. BMC Bioinformatics, 2006 Apr 25; 7. PMID: 16630347 Free PMC article.
Observations on related ecological exponents. T Richard E Southwood, Robert M May, George Sugihara. Proc Natl Acad Sci U S A, 2006 Apr 28; 103(18). PMID: 16641099 Free PMC article.
A likelihood approach to analysis of network data. Carsten Wiuf, Markus Brameier, Oskar Hagberg, Michael P H Stumpf. Proc Natl Acad Sci U S A, 2006 May 10; 103(20). PMID: 16682633 Free PMC article.
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Richard Bonneau, David J Reiss, +4 authors, Vesteinn Thorsson. less Genome Biol, 2006 May 12; 7(5). PMID: 16686963 Free PMC article. Highly Cited.
Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations. Elena Zotenko, Katia S Guimarães, Raja Jothi, Teresa M Przytycka. Algorithms Mol Biol, 2006 May 26; 1(1). PMID: 16722537 Free PMC article.
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. Adam A Margolin, Ilya Nemenman, +4 authors, Andrea Califano. less BMC Bioinformatics, 2006 May 26; 7 Suppl 1. PMID: 16723010 Free PMC article. Highly Cited.
Modularity and community structure in networks. M E J Newman. Proc Natl Acad Sci U S A, 2006 May 26; 103(23). PMID: 16723398 Free PMC article. Highly Cited.
A simple rule for the evolution of cooperation on graphs and social networks. Hisashi Ohtsuki, Christoph Hauert, Erez Lieberman, Martin A Nowak. Nature, 2006 May 26; 441(7092). PMID: 16724065 Free PMC article. Highly Cited.
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks. David J Reiss, Nitin S Baliga, Richard Bonneau. BMC Bioinformatics, 2006 Jun 06; 7. PMID: 16749936 Free PMC article.
Why do hubs tend to be essential in protein networks? Xionglei He, Jianzhi Zhang. PLoS Genet, 2006 Jun 06; 2(6). PMID: 16751849 Free PMC article. Highly Cited.
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. Teresa Reguly, Ashton Breitkreutz, +17 authors, Mike Tyers. less J Biol, 2006 Jun 10; 5(4). PMID: 16762047 Free PMC article. Highly Cited.
From components to regulatory motifs in signalling networks. Avi Ma'ayan, Ravi Iyengar. Brief Funct Genomic Proteomic, 2006 Jun 14; 5(1). PMID: 16769680 Free PMC article. Review.
Network motif identification in stochastic networks. Rui Jiang, Zhidong Tu, Ting Chen, Fengzhu Sun. Proc Natl Acad Sci U S A, 2006 Jun 14; 103(25). PMID: 16769903 Free PMC article.
Networks and epidemic models. Matt J Keeling, Ken T D Eames. J R Soc Interface, 2006 Jul 20; 2(4). PMID: 16849187 Free PMC article. Highly Cited. Review.
Complex networks and simple models in biology. Eric de Silva, Michael P H Stumpf. J R Soc Interface, 2006 Jul 20; 2(5). PMID: 16849202 Free PMC article. Review.
The evolution of network topology by selective removal. Marcel Salathé, Robert M May, Sebastian Bonhoeffer. J R Soc Interface, 2006 Jul 20; 2(5). PMID: 16849212 Free PMC article.
Extracting gene networks for low-dose radiation using graph theoretical algorithms. Brynn H Voy, Jon A Scharff, +5 authors, Michael A Langston. less PLoS Comput Biol, 2006 Jul 21; 2(7). PMID: 16854212 Free PMC article.
Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences. Yi Y Shi, Gerald A Miller, Hong Qian, Karol Bomsztyk. Proc Natl Acad Sci U S A, 2006 Jul 25; 103(31). PMID: 16861299 Free PMC article.
Functional clustering of yeast proteins from the protein-protein interaction network. Taner Z Sen, Andrzej Kloczkowski, Robert L Jernigan. BMC Bioinformatics, 2006 Jul 26; 7. PMID: 16863590 Free PMC article.
Topical interests and the mitigation of search engine bias. S Fortunato, A Flammini, F Menczer, A Vespignani. Proc Natl Acad Sci U S A, 2006 Aug 12; 103(34). PMID: 16901979 Free PMC article.
Topology of resultant networks shaped by evolutionary pressure. Avi Ma'ayan, Azi Lipshtat, Ravi Iyengar. Phys Rev E Stat Nonlin Soft Matter Phys, 2006 Aug 16; 73(6 Pt 1). PMID: 16906869 Free PMC article.
Integrating genetic and network analysis to characterize genes related to mouse weight. Anatole Ghazalpour, Sudheer Doss, +8 authors, Steve Horvath. less PLoS Genet, 2006 Aug 29; 2(8). PMID: 16934000 Free PMC article. Highly Cited.
Global similarity and local divergence in human and mouse gene co-expression networks. Panayiotis Tsaparas, Leonardo Mariño-Ramírez, +2 authors, Olivier Bodenreider, Eugene V Koonin, I King Jordan. less BMC Evol Biol, 2006 Sep 14; 6. PMID: 16968540 Free PMC article.
Modelling protein-protein interaction networks via a stickiness index. Natasa Przulj, Desmond J Higham. J R Soc Interface, 2006 Sep 15; 3(10). PMID: 16971339 Free PMC article.
Genomic analysis of the hierarchical structure of regulatory networks. Haiyuan Yu, Mark Gerstein. Proc Natl Acad Sci U S A, 2006 Sep 28; 103(40). PMID: 17003135 Free PMC article. Highly Cited.
An entropic characterization of protein interaction networks and cellular robustness. Thomas Manke, Lloyd Demetrius, Martin Vingron. J R Soc Interface, 2006 Oct 04; 3(11). PMID: 17015299 Free PMC article.
A 'small-world-like' model for comparing interventions aimed at preventing and controlling influenza pandemics. Fabrice Carrat, Julie Luong, +3 authors, Hans Wackernagel. less BMC Med, 2006 Oct 25; 4. PMID: 17059593 Free PMC article.
Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae. Illés J Farkas, Chuang Wu, +2 authors, Chakra Chennubhotla, Ivet Bahar, Zoltán N Oltvai. less BMC Bioinformatics, 2006 Oct 31; 7. PMID: 17069658 Free PMC article.
Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target. S Horvath, B Zhang, +17 authors, P S Mischel. less Proc Natl Acad Sci U S A, 2006 Nov 09; 103(46). PMID: 17090670 Free PMC article. Highly Cited.
SigFlux: a novel network feature to evaluate the importance of proteins in signal transduction networks. Wei Liu, Dong Li, +2 authors, Jiyang Zhang, Yunping Zhu, Fuchu He. less BMC Bioinformatics, 2006 Nov 30; 7. PMID: 17129367 Free PMC article.
Biological context networks: a mosaic view of the interactome. John Rachlin, Dikla Dotan Cohen, Charles Cantor, Simon Kasif. Mol Syst Biol, 2006 Nov 30; 2. PMID: 17130868 Free PMC article.
The interaction networks of structured RNAs. A Lescoute, E Westhof. Nucleic Acids Res, 2006 Dec 01; 34(22). PMID: 17135184 Free PMC article.
Inferring topology from clustering coefficients in protein-protein interaction networks. Caroline C Friedel, Ralf Zimmer. BMC Bioinformatics, 2006 Dec 02; 7. PMID: 17137490 Free PMC article.
Hydrophobic, hydrophilic, and charged amino acid networks within protein. Md Aftabuddin, S Kundu. Biophys J, 2006 Dec 19; 93(1). PMID: 17172302 Free PMC article.
Local cortical circuit model inferred from power-law distributed neuronal avalanches. Jun-Nosuke Teramae, Tomoki Fukai. J Comput Neurosci, 2007 Jan 18; 22(3). PMID: 17226088
Evolution, interactions, and biological networks. Joshua S Weitz, Philip N Benfey, Ned S Wingreen. PLoS Biol, 2007 Jan 18; 5(1). PMID: 17227140 Free PMC article.
Gene network interconnectedness and the generalized topological overlap measure. Andy M Yip, Steve Horvath. BMC Bioinformatics, 2007 Jan 26; 8. PMID: 17250769 Free PMC article. Highly Cited.
Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes. Mark Pagel, Andrew Meade, Daniel Scott. BMC Evol Biol, 2007 Feb 10; 7 Suppl 1. PMID: 17288574 Free PMC article.
The impact of contact structure on infectious disease control: influenza and antiviral agents. H-P Duerr, M Schwehm, +2 authors, C C Leary, S J De Vlas, M Eichner. less Epidemiol Infect, 2007 Feb 10; 135(7). PMID: 17288643 Free PMC article.
Specificity and evolvability in eukaryotic protein interaction networks. Pedro Beltrao, Luis Serrano. PLoS Comput Biol, 2007 Feb 20; 3(2). PMID: 17305419 Free PMC article.
Global mapping of gene/protein interactions in PubMed abstracts: a framework and an experiment with P53 interactions. Xin Li, Hsinchun Chen, +2 authors, Zan Huang, Hua Su, Jesse D Martinez. less J Biomed Inform, 2007 Feb 24; 40(5). PMID: 17317333 Free PMC article.
Interorganizational network structures and diffusion of information through a health system. Deborah E Gibbons. Am J Public Health, 2007 Mar 03; 97(9). PMID: 17329666 Free PMC article.
Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data. Sailu Yellaboina, Kshama Goyal, Shekhar C Mande. Genome Res, 2007 Mar 07; 17(4). PMID: 17339371 Free PMC article.
Regulation of metabolic networks by small molecule metabolites. Alex Gutteridge, Minoru Kanehisa, Susumu Goto. BMC Bioinformatics, 2007 Mar 14; 8. PMID: 17352833 Free PMC article.
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Shibu Yooseph, Granger Sutton, +30 authors, J Craig Venter. less PLoS Biol, 2007 Mar 16; 5(3). PMID: 17355171 Free PMC article. Highly Cited.
Emergence of tempered preferential attachment from optimization. Raissa M D'Souza, Christian Borgs, +2 authors, Jennifer T Chayes, Noam Berger, Robert D Kleinberg. less Proc Natl Acad Sci U S A, 2007 Mar 31; 104(15). PMID: 17395721 Free PMC article.
A network perspective on the topological importance of enzymes and their phylogenetic conservation. Wei-chung Liu, Wen-hsien Lin, +3 authors, Ming-jing Hwang. less BMC Bioinformatics, 2007 Apr 12; 8. PMID: 17425808 Free PMC article.
Bubble continuous positive airway pressure enhances lung volume and gas exchange in preterm lambs. J Jane Pillow, Noah Hillman, +5 authors, Alan H Jobe. less Am J Respir Crit Care Med, 2007 Apr 14; 176(1). PMID: 17431223 Free PMC article.
Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations. Jun Zhu, Matthew C Wiener, +5 authors, Eric E Schadt. less PLoS Comput Biol, 2007 Apr 17; 3(4). PMID: 17432931 Free PMC article. Highly Cited.
Systems biology of innate immunity. Jesper Tegnér, Roland Nilsson, +2 authors, Vladimir B Bajic, Johan Björkegren, Timothy Ravasi. less Cell Immunol, 2007 Apr 17; 244(2). PMID: 17433274 Free PMC article.
Epstein-Barr virus and virus human protein interaction maps. Michael A Calderwood, Kavitha Venkatesan, +10 authors, Eric Johannsen. less Proc Natl Acad Sci U S A, 2007 Apr 21; 104(18). PMID: 17446270 Free PMC article. Highly Cited.
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. Haiyuan Yu, Philip M Kim, +2 authors, Emmett Sprecher, Valery Trifonov, Mark Gerstein. less PLoS Comput Biol, 2007 Apr 24; 3(4). PMID: 17447836 Free PMC article. Highly Cited.
Structure and tie strengths in mobile communication networks. J-P Onnela, J Saramäki, +5 authors, A-L Barabási. less Proc Natl Acad Sci U S A, 2007 Apr 26; 104(18). PMID: 17456605 Free PMC article. Highly Cited.
Power-law-like distributions in biomedical publications and research funding. Andrew I Su, John B Hogenesch. Genome Biol, 2007 May 03; 8(4). PMID: 17472739 Free PMC article.
Developmental biologists' choice of subjects approximates to a power law, with no evidence for the existence of a special group of 'model organisms'. Jamie A Davies. BMC Dev Biol, 2007 May 03; 7. PMID: 17472742 Free PMC article.
Between "design" and "bricolage": genetic networks, levels of selection, and adaptive evolution. Adam S Wilkins. Proc Natl Acad Sci U S A, 2007 May 15; 104 Suppl 1. PMID: 17494754 Free PMC article.
Participation costs dismiss the advantage of heterogeneous networks in evolution of cooperation. Naoki Masuda. Proc Biol Sci, 2007 May 17; 274(1620). PMID: 17504741 Free PMC article.
Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures. Xin Lu, David L Perkins. BMC Bioinformatics, 2007 May 19; 8. PMID: 17509157 Free PMC article.
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network. Vanessa Vermeirssen, M Inmaculada Barrasa, +5 authors, Albertha J M Walhout. less Genome Res, 2007 May 22; 17(7). PMID: 17513831 Free PMC article.
The relevance of social epidemiology in HIV/AIDS and drug abuse research. Richard Rothenberg. Am J Prev Med, 2007 Aug 19; 32(6 Suppl). PMID: 17543705 Free PMC article. Review.
Understanding network concepts in modules. Jun Dong, Steve Horvath. BMC Syst Biol, 2007 Jun 06; 1. PMID: 17547772 Free PMC article. Highly Cited.
The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network. Duygu Balcan, Alkan Kabakçioğlu, Muhittin Mungan, Ayşe Erzan. PLoS One, 2007 Jun 07; 2(6). PMID: 17551581 Free PMC article.
A scale-free systems theory of motivation and addiction. R Andrew Chambers, Warren K Bickel, Marc N Potenza. Neurosci Biobehav Rev, 2007 Jun 19; 31(7). PMID: 17574673 Free PMC article. Review.
Preferential attachment in sexual networks. Birgitte Freiesleben de Blasio, Ake Svensson, Fredrik Liljeros. Proc Natl Acad Sci U S A, 2007 Jun 21; 104(26). PMID: 17578929 Free PMC article.
A model of Internet topology using k-shell decomposition. Shai Carmi, Shlomo Havlin, +2 authors, Scott Kirkpatrick, Yuval Shavitt, Eran Shir. less Proc Natl Acad Sci U S A, 2007 Jun 26; 104(27). PMID: 17586683 Free PMC article.
Evolutionary history and functional implications of protein domains and their combinations in eukaryotes. Masumi Itoh, Jose C Nacher, +2 authors, Kei-ichi Kuma, Susumu Goto, Minoru Kanehisa. less Genome Biol, 2007 Jun 26; 8(6). PMID: 17588271 Free PMC article.
Relationship between insertion/deletion (indel) frequency of proteins and essentiality. Simon K Chan, Michael Hsing, Fereydoun Hormozdiari, Artem Cherkasov. BMC Bioinformatics, 2007 Jun 30; 8. PMID: 17598914 Free PMC article.
Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution. Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, S Cenk Sahinalp. PLoS Comput Biol, 2007 Jul 10; 3(7). PMID: 17616981 Free PMC article.
Temporal patterns of genes in scientific publications. Thomas Pfeiffer, Robert Hoffmann. Proc Natl Acad Sci U S A, 2007 Jul 11; 104(29). PMID: 17620606 Free PMC article.
Human disease classification in the postgenomic era: a complex systems approach to human pathobiology. Joseph Loscalzo, Isaac Kohane, Albert-Laszlo Barabasi. Mol Syst Biol, 2007 Jul 13; 3. PMID: 17625512 Free PMC article. Highly Cited.
The correlation between architecture and mRNA abundance in the genetic regulatory network of Escherichia coli. Yohann Grondin, Derek J Raine, Vic Norris. BMC Syst Biol, 2007 Jul 21; 1. PMID: 17640329 Free PMC article.
When individual behaviour matters: homogeneous and network models in epidemiology. Shweta Bansal, Bryan T Grenfell, Lauren Ancel Meyers. J R Soc Interface, 2007 Jul 21; 4(16). PMID: 17640863 Free PMC article. Highly Cited.
Moving toward a system genetics view of disease. Solveig K Sieberts, Eric E Schadt. Mamm Genome, 2007 Jul 27; 18(6-7). PMID: 17653589 Free PMC article. Review.
Properties of the organization of memory for people: evidence from dream reports. Richard Schweickert. Psychon Bull Rev, 2007 Aug 19; 14(2). PMID: 17694912
How directional translocation is regulated in a DNA helicase motor. Jin Yu, Taekjip Ha, Klaus Schulten. Biophys J, 2007 Aug 21; 93(11). PMID: 17704159 Free PMC article.
Topological analysis of large-scale biomedical terminology structures. Michael E Bales, Yves A Lussier, Stephen B Johnson. J Am Med Inform Assoc, 2007 Aug 23; 14(6). PMID: 17712094 Free PMC article.
Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery. Hong-Fang Ji, De-Xin Kong, +3 authors, Hong-Yu Zhang. less Genome Biol, 2007 Aug 31; 8(8). PMID: 17727706 Free PMC article.
Modeling gene expression regulatory networks with the sparse vector autoregressive model. André Fujita, João R Sato, +4 authors, Carlos E Ferreira. less BMC Syst Biol, 2007 Sep 01; 1. PMID: 17761000 Free PMC article.
Graph theoretical analysis of complex networks in the brain. Cornelis J Stam, Jaap C Reijneveld. Nonlinear Biomed Phys, 2007 Oct 03; 1(1). PMID: 17908336 Free PMC article. Highly Cited.
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases. Seth I Berger, Jeremy M Posner, Avi Ma'ayan. BMC Bioinformatics, 2007 Oct 06; 8. PMID: 17916244 Free PMC article.
An Arabidopsis gene network based on the graphical Gaussian model. Shisong Ma, Qingqiu Gong, Hans J Bohnert. Genome Res, 2007 Oct 09; 17(11). PMID: 17921353 Free PMC article. Highly Cited.
Contact rearrangements form coupled networks from local motions in allosteric proteins. Michael D Daily, Tarak J Upadhyaya, Jeffrey J Gray. Proteins, 2007 Oct 25; 71(1). PMID: 17957766 Free PMC article.
Adaptive coevolutionary networks: a review. Thilo Gross, Bernd Blasius. J R Soc Interface, 2007 Nov 01; 5(20). PMID: 17971320 Free PMC article. Highly Cited. Review.
Description of recent foot and mouth disease outbreaks in nonendemic areas: exploring the relationship between early detection and epidemic size. Melissa McLaws, Carl Ribble. Can Vet J, 2007 Nov 09; 48(10). PMID: 17987967 Free PMC article.
Analysis of feedback loops and robustness in network evolution based on Boolean models. Yung-Keun Kwon, Kwang-Hyun Cho. BMC Bioinformatics, 2007 Nov 09; 8. PMID: 17988389 Free PMC article.
Distribution of node characteristics in complex networks. Juyong Park, Albert-László Barabási. Proc Natl Acad Sci U S A, 2007 Nov 09; 104(46). PMID: 17989231 Free PMC article.
Discovery of protein interaction networks shared by diseases. Lee Sam, Yang Liu, +2 authors, Jianrong Li, Carol Friedman, Yves A Lussier. less Pac Symp Biocomput, 2007 Nov 10;. PMID: 17992746 Free PMC article.
Dynamics of an idealized model of microtubule growth and catastrophe. T Antal, P L Krapivsky, +2 authors, S Redner, M Mailman, B Chakraborty. less Phys Rev E Stat Nonlin Soft Matter Phys, 2007 Nov 13; 76(4 Pt 1). PMID: 17995026 Free PMC article.
Molecular basis for evolving modularity in the yeast protein interaction network. Ariel Fernández. PLoS Comput Biol, 2007 Nov 14; 3(11). PMID: 17997598 Free PMC article.
Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans. Austin L Hughes, Robert Friedman. Genetica, 2007 Nov 21; 134(2). PMID: 18026854 Free PMC article.
Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast. Guangxu Jin, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen. PLoS One, 2007 Nov 22; 2(11). PMID: 18030341 Free PMC article.
Coordinate gene regulation during hematopoiesis is related to genomic organization. Steven T Kosak, David Scalzo, +5 authors, Mark Groudine. less PLoS Biol, 2007 Nov 23; 5(11). PMID: 18031200 Free PMC article.
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. Hailiang Huang, Bruno M Jedynak, Joel S Bader. PLoS Comput Biol, 2007 Nov 28; 3(11). PMID: 18039026 Free PMC article.
A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method. Illhoi Yoo, Xiaohua Hu, Il-Yeol Song. BMC Bioinformatics, 2007 Dec 06; 8 Suppl 9. PMID: 18047705 Free PMC article.
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. Oliver Ratmann, Ole Jørgensen, +3 authors, Carsten Wiuf. less PLoS Comput Biol, 2007 Dec 07; 3(11). PMID: 18052538 Free PMC article.
Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy. Ido Amit, Ron Wides, Yosef Yarden. Mol Syst Biol, 2007 Dec 07; 3. PMID: 18059446 Free PMC article. Review.
Boltzmann, Lotka and Volterra and spatial structural evolution: an integrated methodology for some dynamical systems. Alan Wilson. J R Soc Interface, 2007 Dec 14; 5(25). PMID: 18077242 Free PMC article.
Spectral plots and the representation and interpretation of biological data. Anirban Banerjee, Jürgen Jost. Theory Biosci, 2007 Dec 19; 126(1). PMID: 18087753
The properties of high-dimensional data spaces: implications for exploring gene and protein expression data. Robert Clarke, Habtom W Ressom, +4 authors, Yue Wang. less Nat Rev Cancer, 2007 Dec 22; 8(1). PMID: 18097463 Free PMC article. Highly Cited. Review.
Cartography of complex networks: modules and universal roles. Roger Guimerà, Luís A Nunes Amaral. J Stat Mech, 2007 Dec 27; 2005(P02001). PMID: 18159217 Free PMC article. Highly Cited.
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication. Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony. Proc Natl Acad Sci U S A, 2008 Jan 18; 105(3). PMID: 18199840 Free PMC article.
Inherent size constraints on prokaryote gene networks due to "accelerating" growth. M J Gagen, J S Mattick. Theory Biosci, 2008 Jan 19; 123(4). PMID: 18202872
Degree distributions in sexual networks: a framework for evaluating evidence. Deven T Hamilton, Mark S Handcock, Martina Morris. Sex Transm Dis, 2008 Jan 25; 35(1). PMID: 18217224 Free PMC article.
Regulatory network reconstruction using an integral additive model with flexible kernel functions. Eugene Novikov, Emmanuel Barillot. BMC Syst Biol, 2008 Jan 26; 2. PMID: 18218091 Free PMC article.
The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment. Wagied Davids, Zhaolei Zhang. BMC Evol Biol, 2008 Jan 26; 8. PMID: 18218112 Free PMC article.
GraphCrunch: a tool for large network analyses. Tijana Milenković, Jason Lai, Natasa Przulj. BMC Bioinformatics, 2008 Jan 31; 9. PMID: 18230190 Free PMC article.
The laboratory for perceptual dynamics at the RIKEN BSI. Cees van Leeuwen. Cogn Process, 2008 Jan 31; 6(3). PMID: 18231824
Evidence of probabilistic behaviour in protein interaction networks. Joseph Ivanic, Anders Wallqvist, Jaques Reifman. BMC Syst Biol, 2008 Feb 02; 2. PMID: 18237403 Free PMC article.
On cycles in the transcription network of Saccharomyces cerevisiae. Jieun Jeong, Piotr Berman. BMC Syst Biol, 2008 Feb 02; 2. PMID: 18237406 Free PMC article.
Gene expression dynamics in the macrophage exhibit criticality. Matti Nykter, Nathan D Price, +5 authors, Ilya Shmulevich. less Proc Natl Acad Sci U S A, 2008 Feb 06; 105(6). PMID: 18250330 Free PMC article.
Algorithms for finding small attractors in Boolean networks. Shu-Qin Zhang, Morihiro Hayashida, +2 authors, Tatsuya Akutsu, Wai-Ki Ching, Michael K Ng. less EURASIP J Bioinform Syst Biol, 2008 Feb 07;. PMID: 18253467 Free PMC article.
The landscape of human proteins interacting with viruses and other pathogens. Matthew D Dyer, T M Murali, Bruno W Sobral. PLoS Pathog, 2008 Feb 20; 4(2). PMID: 18282095 Free PMC article. Highly Cited.
Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves. Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai. PLoS One, 2008 Feb 21; 3(2). PMID: 18286179 Free PMC article.
Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network. Takeshi Hase, Yoshihito Niimura, Tsuguchika Kaminuma, Hiroshi Tanaka. PLoS One, 2008 Feb 28; 3(2). PMID: 18301745 Free PMC article.
The blind watchmaker network: scale-freeness and evolution. Petter Minnhagen, Sebastian Bernhardsson. PLoS One, 2008 Feb 28; 3(2). PMID: 18301767 Free PMC article.
A global view of drug-therapy interactions. Jose C Nacher, Jean-Marc Schwartz. BMC Pharmacol, 2008 Mar 06; 8. PMID: 18318892 Free PMC article.
eQED: an efficient method for interpreting eQTL associations using protein networks. Silpa Suthram, Andreas Beyer, +2 authors, Richard M Karp, Yonina Eldar, Trey Ideker. less Mol Syst Biol, 2008 Mar 06; 4. PMID: 18319721 Free PMC article.
Quantifying the relationships among drug classes. Jérôme Hert, Michael J Keiser, +2 authors, John J Irwin, Tudor I Oprea, Brian K Shoichet. less J Chem Inf Model, 2008 Mar 14; 48(4). PMID: 18335977 Free PMC article.
Integrating global gene expression analysis and genetics. Charles R Farber, Aldons J Lusis. Adv Genet, 2008 Mar 25; 60. PMID: 18358333 Free PMC article. Review.
From time series to complex networks: the visibility graph. Lucas Lacasa, Bartolo Luque, +2 authors, Fernando Ballesteros, Jordi Luque, Juan Carlos Nuño. less Proc Natl Acad Sci U S A, 2008 Mar 26; 105(13). PMID: 18362361 Free PMC article.
Topological comparison of methods for predicting transcriptional cooperativity in yeast. Daniel Aguilar, Baldo Oliva. BMC Genomics, 2008 Mar 28; 9. PMID: 18366726 Free PMC article.
What can graph theory tell us about word learning and lexical retrieval? Michael S Vitevitch. J Speech Lang Hear Res, 2008 Mar 28; 51(2). PMID: 18367686 Free PMC article.
Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Robert J Morgan, Ivan Soltesz. Proc Natl Acad Sci U S A, 2008 Apr 01; 105(16). PMID: 18375756 Free PMC article. Highly Cited.
Mesoscopic structure conditions the emergence of cooperation on social networks. Sergi Lozano, Alex Arenas, Angel Sánchez. PLoS One, 2008 Apr 03; 3(4). PMID: 18382673 Free PMC article.
Learning and innovative elements of strategy adoption rules expand cooperative network topologies. Shijun Wang, Máté S Szalay, Changshui Zhang, Peter Csermely. PLoS One, 2008 Apr 10; 3(4). PMID: 18398453 Free PMC article.
A small world of neuronal synchrony. Shan Yu, Debin Huang, Wolf Singer, Danko Nikolic. Cereb Cortex, 2008 Apr 11; 18(12). PMID: 18400792 Free PMC article.
Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network. Ivan Iossifov, Tian Zheng, +2 authors, Miron Baron, T Conrad Gilliam, Andrey Rzhetsky. less Genome Res, 2008 Apr 18; 18(7). PMID: 18417725 Free PMC article.
Evolvability and hierarchy in rewired bacterial gene networks. Mark Isalan, Caroline Lemerle, +5 authors, Luis Serrano. less Nature, 2008 Apr 19; 452(7189). PMID: 18421347 Free PMC article. Highly Cited.
Efficiency of the immunome protein interaction network increases during evolution. Csaba Ortutay, Mauno Vihinen. Immunome Res, 2008 Apr 24; 4. PMID: 18430195 Free PMC article.
Network 'small-world-ness': a quantitative method for determining canonical network equivalence. Mark D Humphries, Kevin Gurney. PLoS One, 2008 May 01; 3(4). PMID: 18446219 Free PMC article. Highly Cited.
Global behavior of epidemic transmission on heterogeneous networks via two distinct routes. Haifeng Zhang, Michael Small, Xinchu Fu. Nonlinear Biomed Phys, 2008 May 03; 2(1). PMID: 18452605 Free PMC article.
The role of DNA-binding specificity in the evolution of bacterial regulatory networks. Irma Lozada-Chávez, Vladimir Espinosa Angarica, Julio Collado-Vides, Bruno Contreras-Moreira. J Mol Biol, 2008 May 10; 379(3). PMID: 18466918 Free PMC article.
Contribution of exploratory methods to the investigation of extended large-scale brain networks in functional MRI: methodologies, results, and challenges. V Perlbarg, G Marrelec. Int J Biomed Imaging, 2008 May 24; 2008. PMID: 18497865 Free PMC article.
Complex cooperative networks from evolutionary preferential attachment. Julia Poncela, Jesús Gómez-Gardeñes, +2 authors, Luis M Floría, Angel Sánchez, Yamir Moreno. less PLoS One, 2008 Jun 19; 3(6). PMID: 18560601 Free PMC article.
Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code. Shalev Itzkovitz, Leehod Baruch, Ehud Shapiro, Eran Segal. Proc Natl Acad Sci U S A, 2008 Jun 28; 105(27). PMID: 18583478 Free PMC article.
Biomolecular network motif counting and discovery by color coding. Noga Alon, Phuong Dao, +2 authors, S Cenk Sahinalp. less Bioinformatics, 2008 Jul 01; 24(13). PMID: 18586721 Free PMC article.
The topology of the bacterial co-conserved protein network and its implications for predicting protein function. Anis Karimpour-Fard, Sonia M Leach, Lawrence E Hunter, Ryan T Gill. BMC Genomics, 2008 Jul 02; 9. PMID: 18590549 Free PMC article.
Dynamics of Microtubule Instabilities. T Antal, P L Krapivsky, S Redner. J Stat Mech, 2008 Jul 03; (5). PMID: 18594695 Free PMC article.
Deducing topology of protein-protein interaction networks from experimentally measured sub-networks. Ling Yang, Thomas M Vondriska, +3 authors, Zhilin Qu. less BMC Bioinformatics, 2008 Jul 05; 9. PMID: 18598366 Free PMC article.
The implications of human metabolic network topology for disease comorbidity. D-S Lee, J Park, +3 authors, K A Kay, N A Christakis, Z N Oltvai, A-L Barabási. less Proc Natl Acad Sci U S A, 2008 Jul 05; 105(29). PMID: 18599447 Free PMC article. Highly Cited. Review.
Phase locking induces scale-free topologies in networks of coupled oscillators. Irene Sendiña-Nadal, Javier M Buldú, Inmaculada Leyva, Stefano Boccaletti. PLoS One, 2008 Jul 10; 3(7). PMID: 18612423 Free PMC article.
A gene wiki for community annotation of gene function. Jon W Huss, Camilo Orozco, +5 authors, Andrew I Su. less PLoS Biol, 2008 Jul 11; 6(7). PMID: 18613750 Free PMC article.
Unraveling protein networks with power graph analysis. Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder. PLoS Comput Biol, 2008 Jul 12; 4(7). PMID: 18617988 Free PMC article.
Classes of complex networks defined by role-to-role connectivity profiles. Roger Guimerà, Marta Sales-Pardo, Luís A N Amaral. Nat Phys, 2008 Jul 12; 3(1). PMID: 18618010 Free PMC article.
Coordinated evolution of the hepatitis C virus. D S Campo, Z Dimitrova, +2 authors, R J Mitchell, J Lara, Y Khudyakov. less Proc Natl Acad Sci U S A, 2008 Jul 16; 105(28). PMID: 18621679 Free PMC article.
Revealing unique properties of the ribosome using a network based analysis. Hilda David-Eden, Yael Mandel-Gutfreund. Nucleic Acids Res, 2008 Jul 16; 36(14). PMID: 18625614 Free PMC article.
Convergence and divergence are mostly reciprocated properties of the connections in the network of cortical areas. László Négyessy, Tamás Nepusz, László Zalányi, Fülöp Bazsó. Proc Biol Sci, 2008 Jul 17; 275(1649). PMID: 18628120 Free PMC article.
Unravelling the ORFan Puzzle. Naomi Siew, Daniel Fischer. Comp Funct Genomics, 2008 Jul 17; 4(4). PMID: 18629076 Free PMC article.
An approach to inferring transcriptional regulation among genes from large-scale expression data. Javier Herrero, Ramón Díaz-Uriarte, Joaquín Dopazo. Comp Funct Genomics, 2008 Jul 17; 4(1). PMID: 18629097 Free PMC article.
A network model for the correlation between epistasis and genomic complexity. Rafael Sanjuán, Miguel R Nebot. PLoS One, 2008 Jul 24; 3(7). PMID: 18648534 Free PMC article.
High-order combination effects and biological robustness. Joseph Lehár, Andrew Krueger, Grant Zimmermann, Alexis Borisy. Mol Syst Biol, 2008 Aug 07; 4. PMID: 18682705 Free PMC article.
On the origin of distribution patterns of motifs in biological networks. Arun S Konagurthu, Arthur M Lesk. BMC Syst Biol, 2008 Aug 14; 2. PMID: 18700017 Free PMC article.
The effect of opinion clustering on disease outbreaks. Marcel Salathé, Sebastian Bonhoeffer. J R Soc Interface, 2008 Aug 21; 5(29). PMID: 18713723 Free PMC article.
High-quality binary protein interaction map of the yeast interactome network. Haiyuan Yu, Pascal Braun, +31 authors, Marc Vidal. less Science, 2008 Aug 23; 322(5898). PMID: 18719252 Free PMC article. Highly Cited.
Random drift versus selection in academic vocabulary: an evolutionary analysis of published keywords. R Alexander Bentley. PLoS One, 2008 Aug 30; 3(8). PMID: 18728786 Free PMC article.
Probing the extent of randomness in protein interaction networks. Joseph Ivanic, Anders Wallqvist, Jaques Reifman. PLoS Comput Biol, 2008 Sep 05; 4(7). PMID: 18769589 Free PMC article.
Experience versus talent shapes the structure of the Web. Joseph S Kong, Nima Sarshar, Vwani P Roychowdhury. Proc Natl Acad Sci U S A, 2008 Sep 10; 105(37). PMID: 18779560 Free PMC article.
Algorithms and complexity analyses for control of singleton attractors in Boolean networks. Morihiro Hayashida, Takeyuki Tamura, +2 authors, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching. less EURASIP J Bioinform Syst Biol, 2008 Sep 17;. PMID: 18795107 Free PMC article.
Complexity of chronic asthma and chronic obstructive pulmonary disease: implications for risk assessment, and disease progression and control. Urs Frey, Béla Suki. Lancet, 2008 Sep 23; 372(9643). PMID: 18805337 Free PMC article. Review.
Organization of excitable dynamics in hierarchical biological networks. Mark Müller-Linow, Claus C Hilgetag, Marc-Thorsten Hütt. PLoS Comput Biol, 2008 Sep 27; 4(9). PMID: 18818769 Free PMC article.
Phylogenetic distances are encoded in networks of interacting pathways. Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A Buck. Bioinformatics, 2008 Sep 30; 24(22). PMID: 18820265 Free PMC article.
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history. Philip M Kim, Hugo Y K Lam, +7 authors, Mark B Gerstein. less Genome Res, 2008 Oct 10; 18(12). PMID: 18842824 Free PMC article.
Representing the UK's cattle herd as static and dynamic networks. Matthew C Vernon, Matt J Keeling. Proc Biol Sci, 2008 Oct 16; 276(1656). PMID: 18854300 Free PMC article.
The protein interaction network of the epithelial junctional complex: a system-level analysis. Luca Paris, Gianfranco Bazzoni. Mol Biol Cell, 2008 Oct 17; 19(12). PMID: 18923145 Free PMC article.
Asymmetric disassembly and robustness in declining networks. Serguei Saavedra, Felix Reed-Tsochas, Brian Uzzi. Proc Natl Acad Sci U S A, 2008 Oct 22; 105(43). PMID: 18936489 Free PMC article.
Insights into the organization of biochemical regulatory networks using graph theory analyses. Avi Ma'ayan. J Biol Chem, 2008 Oct 23; 284(9). PMID: 18940806 Free PMC article. Review.
Towards systems biology of heterosis: a hypothesis about molecular network structure applied for the Arabidopsis metabolome. Sandra Andorf, Tanja Gärtner, +3 authors, Dirk Repsilber. less EURASIP J Bioinform Syst Biol, 2008 Oct 24;. PMID: 18946548 Free PMC article.
Spatio-temporal waves and targeted vaccination in recurrent epidemic network models. Anna Litvak-Hinenzon, Lewi Stone. J R Soc Interface, 2008 Oct 30; 6(38). PMID: 18957362 Free PMC article.
Boolean implication networks derived from large scale, whole genome microarray datasets. Debashis Sahoo, David L Dill, +2 authors, Andrew J Gentles, Robert Tibshirani, Sylvia K Plevritis. less Genome Biol, 2008 Nov 01; 9(10). PMID: 18973690 Free PMC article.
Elucidating the role of gonadal hormones in sexually dimorphic gene coexpression networks. Atila van Nas, Debraj Guhathakurta, +9 authors, Aldons J Lusis. less Endocrinology, 2008 Nov 01; 150(3). PMID: 18974276 Free PMC article. Highly Cited.
Shapley ratings in brain networks. Rolf Kötter, Andrew T Reid, +2 authors, Antje Krumnack, Egon Wanke, Olaf Sporns. less Front Neuroinform, 2008 Nov 01; 1. PMID: 18974797 Free PMC article.
The scale-free dynamics of eukaryotic cells. Miguel A Aon, Marc R Roussel, +4 authors, David Lloyd. less PLoS One, 2008 Nov 05; 3(11). PMID: 18982073 Free PMC article.
Firing synchronization and temporal order in noisy neuronal networks. Xia Shi, Qingyun Wang, Qishao Lu. Cogn Neurodyn, 2008 Nov 13; 2(3). PMID: 19003485 Free PMC article.
Robust emergence of small-world structure in networks of spiking neurons. Hoi Fei Kwok, Peter Jurica, Antonino Raffone, Cees van Leeuwen. Cogn Neurodyn, 2008 Nov 13; 1(1). PMID: 19003495 Free PMC article.
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. Pawel Durek, Dirk Walther. BMC Syst Biol, 2008 Nov 27; 2. PMID: 19032748 Free PMC article.
Laws of population growth. Hernán D Rozenfeld, Diego Rybski, +3 authors, Hernán A Makse. less Proc Natl Acad Sci U S A, 2008 Nov 27; 105(48). PMID: 19033186 Free PMC article.
Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks. Avi Ma'ayan, Guillermo A Cecchi, +3 authors, Gustavo Stolovitzky. less Proc Natl Acad Sci U S A, 2008 Nov 27; 105(49). PMID: 19033453 Free PMC article.
Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence. Wan Kyu Kim, Edward M Marcotte. PLoS Comput Biol, 2008 Dec 02; 4(11). PMID: 19043579 Free PMC article.
Superfamily phenomena and motifs of networks induced from time series. Xiaoke Xu, Jie Zhang, Michael Small. Proc Natl Acad Sci U S A, 2008 Dec 10; 105(50). PMID: 19064916 Free PMC article.
Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies. Csaba Ortutay, Mauno Vihinen. Nucleic Acids Res, 2008 Dec 17; 37(2). PMID: 19073697 Free PMC article.
Regulation by transcription factors in bacteria: beyond description. Enrique Balleza, Lucia N López-Bojorquez, +5 authors, Julio Collado-Vides. less FEMS Microbiol Rev, 2008 Dec 17; 33(1). PMID: 19076632 Free PMC article. Review.
Sick and edgy: walk-counting as a metric of epidemic spreading on networks. Dennis C Wylie, Wayne M Getz. J R Soc Interface, 2008 Dec 19; 6(39). PMID: 19091685 Free PMC article.
Folding energy landscape and network dynamics of small globular proteins. Naoto Hori, George Chikenji, R Stephen Berry, Shoji Takada. Proc Natl Acad Sci U S A, 2008 Dec 31; 106(1). PMID: 19114654 Free PMC article.
Translational biology: from Arabidopsis flowers to grass inflorescence architecture. Beth E Thompson, Sarah Hake. Plant Physiol, 2009 Jan 08; 149(1). PMID: 19126693 Free PMC article.
In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution. Nozomu Yachie, Rintaro Saito, +2 authors, Junichi Sugahara, Masaru Tomita, Yasushi Ishihama. less Mol Cell Proteomics, 2009 Jan 13; 8(5). PMID: 19136663 Free PMC article.
Domain mobility in proteins: functional and evolutionary implications. Malay Kumar Basu, Eugenia Poliakov, Igor B Rogozin. Brief Bioinform, 2009 Jan 20; 10(3). PMID: 19151098 Free PMC article.
Behavioral experiments on biased voting in networks. Michael Kearns, Stephen Judd, Jinsong Tan, Jennifer Wortman. Proc Natl Acad Sci U S A, 2009 Jan 27; 106(5). PMID: 19168630 Free PMC article.
Model of genetic variation in human social networks. James H Fowler, Christopher T Dawes, Nicholas A Christakis. Proc Natl Acad Sci U S A, 2009 Jan 28; 106(6). PMID: 19171900 Free PMC article.
WiFi networks and malware epidemiology. Hao Hu, Steven Myers, Vittoria Colizza, Alessandro Vespignani. Proc Natl Acad Sci U S A, 2009 Jan 28; 106(5). PMID: 19171909 Free PMC article.
Protein domain organisation: adding order. Sarah K Kummerfeld, Sarah A Teichmann. BMC Bioinformatics, 2009 Jan 31; 10. PMID: 19178743 Free PMC article.
Efficient network reconstruction from dynamical cascades identifies small-world topology of neuronal avalanches. Sinisa Pajevic, Dietmar Plenz. PLoS Comput Biol, 2009 Jan 31; 5(1). PMID: 19180180 Free PMC article.
Universal features in the genome-level evolution of protein domains. Marco Cosentino Lagomarsino, Alessandro L Sellerio, Philip D Heijning, Bruno Bassetti. Genome Biol, 2009 Feb 03; 10(1). PMID: 19183449 Free PMC article.
Benchmarking regulatory network reconstruction with GRENDEL. Brian C Haynes, Michael R Brent. Bioinformatics, 2009 Feb 04; 25(6). PMID: 19188190 Free PMC article.
Towards safer, better healthcare: harnessing the natural properties of complex sociotechnical systems. J Braithwaite, W B Runciman, A F Merry. Qual Saf Health Care, 2009 Feb 11; 18(1). PMID: 19204130 Free PMC article.
Shadows of complexity: what biological networks reveal about epistasis and pleiotropy. Anna L Tyler, Folkert W Asselbergs, Scott M Williams, Jason H Moore. Bioessays, 2009 Feb 11; 31(2). PMID: 19204994 Free PMC article.
Mechanisms of tumor resistance to EGFR-targeted therapies. Elizabeth A Hopper-Borge, Rochelle E Nasto, +3 authors, Igor Astsaturov. less Expert Opin Ther Targets, 2009 Feb 25; 13(3). PMID: 19236156 Free PMC article. Review.
Disease-associated pathophysiologic structures in pediatric rheumatic diseases show characteristics of scale-free networks seen in physiologic systems: implications for pathogenesis and treatment. Mark Barton Frank, Shirley Wang, +8 authors, James N Jarvis. less BMC Med Genomics, 2009 Feb 25; 2. PMID: 19236715 Free PMC article.
Disease candidate gene identification and prioritization using protein interaction networks. Jing Chen, Bruce J Aronow, Anil G Jegga. BMC Bioinformatics, 2009 Feb 28; 10. PMID: 19245720 Free PMC article. Highly Cited.
Global networks of functional coupling in eukaryotes from comprehensive data integration. Andrey Alexeyenko, Erik L L Sonnhammer. Genome Res, 2009 Feb 28; 19(6). PMID: 19246318 Free PMC article.
Proteomic profiling of KATP channel-deficient hypertensive heart maps risk for maladaptive cardiomyopathic outcome. Jelena Zlatkovic, D Kent Arrell, +3 authors, Andre Terzic. less Proteomics, 2009 Mar 03; 9(5). PMID: 19253285 Free PMC article.
Using semantic and structural properties of the Unified Medical Language System to discover potential terminological relationships. Chintan O Patel, James J Cimino. J Am Med Inform Assoc, 2009 Mar 06; 16(3). PMID: 19261940 Free PMC article.
Noninjurious mechanical ventilation activates a proinflammatory transcriptional program in the lung. Sina A Gharib, W Conrad Liles, Lindy S Klaff, William A Altemeier. Physiol Genomics, 2009 Mar 12; 37(3). PMID: 19276240 Free PMC article.
Universality of rank-ordering distributions in the arts and sciences. Gustavo Martínez-Mekler, Roberto Alvarez Martínez, +3 authors, Germinal Cocho. less PLoS One, 2009 Mar 12; 4(3). PMID: 19277122 Free PMC article.
Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks. Wen-Hsien Lin, Wei-Chung Liu, Ming-Jing Hwang. BMC Syst Biol, 2009 Mar 17; 3. PMID: 19284572 Free PMC article.
Uniting pattern and process in plant-animal mutualistic networks: a review. Diego P Vázquez, Nico Blüthgen, Luciano Cagnolo, Natacha P Chacoff. Ann Bot, 2009 Mar 24; 103(9). PMID: 19304996 Free PMC article. Review.
Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms. P Gerlee, T Lundh, B Zhang, A R A Anderson. J R Soc Interface, 2009 Mar 28; 6(41). PMID: 19324678 Free PMC article.
The spread of awareness and its impact on epidemic outbreaks. Sebastian Funk, Erez Gilad, Chris Watkins, Vincent A A Jansen. Proc Natl Acad Sci U S A, 2009 Apr 01; 106(16). PMID: 19332788 Free PMC article. Highly Cited.
Specification of spatial relationships in directed graphs of cell signaling networks. Azi Lipshtat, Susana R Neves, Ravi Iyengar. Ann N Y Acad Sci, 2009 Apr 08; 1158. PMID: 19348631 Free PMC article.
Extracting the multiscale backbone of complex weighted networks. M Angeles Serrano, Marián Boguñá, Alessandro Vespignani. Proc Natl Acad Sci U S A, 2009 Apr 10; 106(16). PMID: 19357301 Free PMC article.
Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks. Alexander J Stewart, Robert M Seymour, Andrew Pomiankowski. Proc Biol Sci, 2009 Apr 15; 276(1666). PMID: 19364737 Free PMC article.
Transcriptional regulation shapes the organization of genes on bacterial chromosomes. Sarath Chandra Janga, Heladia Salgado, Agustino Martínez-Antonio. Nucleic Acids Res, 2009 Apr 18; 37(11). PMID: 19372274 Free PMC article.
The lexical restructuring hypothesis and graph theoretic analyses of networks based on random lexicons. Thomas M Gruenenfelder, David B Pisoni. J Speech Lang Hear Res, 2009 Apr 22; 52(3). PMID: 19380607 Free PMC article.
Uncovering intrinsic modular organization of spontaneous brain activity in humans. Yong He, Jinhui Wang, +8 authors, Alan C Evans. less PLoS One, 2009 Apr 22; 4(4). PMID: 19381298 Free PMC article. Highly Cited.
Recursive regularization for inferring gene networks from time-course gene expression profiles. Teppei Shimamura, Seiya Imoto, +3 authors, Satoru Miyano. less BMC Syst Biol, 2009 Apr 24; 3. PMID: 19386091 Free PMC article.
Perturbation of interaction networks for application to cancer therapy. Adrian P Quayle, Asim S Siddiqui, Steven J M Jones. Cancer Inform, 2007 Jan 01; 5. PMID: 19390668 Free PMC article.
Identifying hubs in protein interaction networks. Ravishankar R Vallabhajosyula, Deboki Chakravarti, +2 authors, Samina Lutfeali, Animesh Ray, Alpan Raval. less PLoS One, 2009 Apr 29; 4(4). PMID: 19399170 Free PMC article.
Rich can get poor: conversion of hub to non-hub proteins. Kyaw Tun, Raghuraj Keshava Rao, +2 authors, Pawan K Dhar. less Syst Synth Biol, 2009 Apr 29; 2(3-4). PMID: 19399641 Free PMC article.
Gene expression profiling in neutrophils from children with polyarticular juvenile idiopathic arthritis. James N Jarvis, Kaiyu Jiang, +12 authors, Michael Centola. less Arthritis Rheum, 2009 May 01; 60(5). PMID: 19404961 Free PMC article.
The effect of network topology on the stability of discrete state models of genetic control. Andrew Pomerance, Edward Ott, Michelle Girvan, Wolfgang Losert. Proc Natl Acad Sci U S A, 2009 May 07; 106(20). PMID: 19416903 Free PMC article.
Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms. Xiaotong Lin, Mei Liu, Xue-wen Chen. BMC Bioinformatics, 2009 May 14; 10 Suppl 4. PMID: 19426453 Free PMC article.
Core and periphery structures in protein interaction networks. Feng Luo, Bo Li, Xiu-Feng Wan, Richard H Scheuermann. BMC Bioinformatics, 2009 May 14; 10 Suppl 4. PMID: 19426456 Free PMC article.
Food-web structure and ecosystem services: insights from the Serengeti. Andy Dobson. Philos Trans R Soc Lond B Biol Sci, 2009 May 20; 364(1524). PMID: 19451118 Free PMC article. Review.
The assembly and disassembly of ecological networks. Jordi Bascompte, Daniel B Stouffer. Philos Trans R Soc Lond B Biol Sci, 2009 May 20; 364(1524). PMID: 19451127 Free PMC article. Review.
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins. Jun-ichi Ito, Yuki Sonobe, +2 authors, Kazuyoshi Ikeda, Kentaro Tomii, Junichi Higo. less BMC Struct Biol, 2009 May 21; 9. PMID: 19454039 Free PMC article.
Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease. Radu Dobrin, Jun Zhu, +6 authors, Eric E Schadt. less Genome Biol, 2009 May 26; 10(5). PMID: 19463160 Free PMC article.
Underlying principles of natural selection in network evolution: systems biology approach. Bor-Sen Chen, Wei-Sheng Wu. Evol Bioinform Online, 2007 Jan 01; 3. PMID: 19468310 Free PMC article.
Uncovering the properties of energy-weighted conformation space networks with a hydrophobic-hydrophilic model. Zaizhi Lai, Jiguo Su, Weizu Chen, Cunxin Wang. Int J Mol Sci, 2009 May 27; 10(4). PMID: 19468340 Free PMC article.
Longitudinal analysis of early semantic networks: preferential attachment or preferential acquisition? Thomas T Hills, Mounir Maouene, +2 authors, Josita Maouene, Adam Sheya, Linda Smith. less Psychol Sci, 2009 May 28; 20(6). PMID: 19470123 Free PMC article.
KELLER: estimating time-varying interactions between genes. Le Song, Mladen Kolar, Eric P Xing. Bioinformatics, 2009 May 30; 25(12). PMID: 19477978 Free PMC article.
Hypergraphs and cellular networks. Steffen Klamt, Utz-Uwe Haus, Fabian Theis. PLoS Comput Biol, 2009 May 30; 5(5). PMID: 19478865 Free PMC article.
A big world inside small-world networks. Zhihua Zhang, Jianzhi Zhang. PLoS One, 2009 May 30; 4(5). PMID: 19479083 Free PMC article.
Symbiotic relationship between brain structure and dynamics. Mikail Rubinov, Olaf Sporns, Cees van Leeuwen, Michael Breakspear. BMC Neurosci, 2009 Jun 03; 10. PMID: 19486538 Free PMC article.
Evolutionary dynamics on graphs: Efficient method for weak selection. Feng Fu, Long Wang, Martin A Nowak, Christoph Hauert. Phys Rev E Stat Nonlin Soft Matter Phys, 2009 Jun 13; 79(4 Pt 2). PMID: 19518380 Free PMC article.
Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids. Sangtae Ahn, Richard T Wang, +4 authors, Desmond J Smith. less PLoS Comput Biol, 2009 Jun 13; 5(6). PMID: 19521529 Free PMC article.
Model criticism based on likelihood-free inference, with an application to protein network evolution. Oliver Ratmann, Christophe Andrieu, Carsten Wiuf, Sylvia Richardson. Proc Natl Acad Sci U S A, 2009 Jun 16; 106(26). PMID: 19525398 Free PMC article.
Apprehending multicellularity: regulatory networks, genomics, and evolution. L Aravind, Vivek Anantharaman, Thiago M Venancio. Birth Defects Res C Embryo Today, 2009 Jun 17; 87(2). PMID: 19530132 Free PMC article. Review.
A social network analysis of primate groups. Claudia Kasper, Bernhard Voelkl. Primates, 2009 Jun 18; 50(4). PMID: 19533270
Deciphering the connectivity structure of biological networks using MixNet. Franck Picard, Vincent Miele, +2 authors, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin. less BMC Bioinformatics, 2009 Jun 26; 10 Suppl 6. PMID: 19534742 Free PMC article.
The common patterns of nature. S A Frank. J Evol Biol, 2009 Jun 23; 22(8). PMID: 19538344 Free PMC article. Review.
Optimized null model for protein structure networks. Tijana Milenković, Ioannis Filippis, Michael Lappe, Natasa Przulj. PLoS One, 2009 Jun 27; 4(6). PMID: 19557139 Free PMC article.
Annotating the human genome with Disease Ontology. John D Osborne, Jared Flatow, +6 authors, Rex L Chisholm. less BMC Genomics, 2009 Jul 25; 10 Suppl 1. PMID: 19594883 Free PMC article. Highly Cited.
Scaling laws of human interaction activity. Diego Rybski, Sergey V Buldyrev, +2 authors, Shlomo Havlin, Fredrik Liljeros, Hernán A Makse. less Proc Natl Acad Sci U S A, 2009 Jul 21; 106(31). PMID: 19617555 Free PMC article.
The organization of the transcriptional network in specific neuronal classes. Kellen D Winden, Michael C Oldham, +6 authors, Daniel H Geschwind. less Mol Syst Biol, 2009 Jul 30; 5. PMID: 19638972 Free PMC article.
Network analyses in systems pharmacology. Seth I Berger, Ravi Iyengar. Bioinformatics, 2009 Aug 04; 25(19). PMID: 19648136 Free PMC article. Highly Cited. Review.
Human disease-drug network based on genomic expression profiles. Guanghui Hu, Pankaj Agarwal. PLoS One, 2009 Aug 07; 4(8). PMID: 19657382 Free PMC article. Highly Cited.
Geometric de-noising of protein-protein interaction networks. Oleksii Kuchaiev, Marija Rasajski, Desmond J Higham, Natasa Przulj. PLoS Comput Biol, 2009 Aug 08; 5(8). PMID: 19662157 Free PMC article.
Looking for robust properties in the growth of an academic network: the case of the Uruguayan biological research community. Alvaro Cabana, Eduardo Mizraji, Andrés Pomi, Juan Carlos Valle-Lisboa. J Biol Phys, 2008 Apr 01; 34(1-2). PMID: 19669499 Free PMC article.
An evolving model of undirected networks based on microscopic biological interaction systems. Lu Tan, Jianhua Zhang, Lu Jiang. J Biol Phys, 2009 Aug 12; 35(2). PMID: 19669562 Free PMC article.
Making the right connections: biological networks in the light of evolution. Christopher G Knight, John W Pinney. Bioessays, 2009 Sep 02; 31(10). PMID: 19722181 Free PMC article.
Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach. Wenhui Wang, Juan Nunez-Iglesias, Yihui Luan, Fengzhu Sun. BMC Bioinformatics, 2009 Sep 05; 10. PMID: 19728875 Free PMC article.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Renuka R Nayak, Michael Kearns, Richard S Spielman, Vivian G Cheung. Genome Res, 2009 Oct 03; 19(11). PMID: 19797678 Free PMC article.
Kavosh: a new algorithm for finding network motifs. Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, +6 authors, Ali Masoudi-Nejad. less BMC Bioinformatics, 2009 Oct 06; 10. PMID: 19799800 Free PMC article.
Network of vascular diseases, death and biochemical characteristics in a set of 4,197 patients with type 1 diabetes (the FinnDiane Study). Ville-Petteri Mäkinen, Carol Forsblom, +4 authors, Per-Henrik Groop. less Cardiovasc Diabetol, 2009 Oct 07; 8. PMID: 19804653 Free PMC article.
Traffic-driven epidemic spreading in finite-size scale-free networks. Sandro Meloni, Alex Arenas, Yamir Moreno. Proc Natl Acad Sci U S A, 2009 Oct 07; 106(40). PMID: 19805184 Free PMC article.
Deterministic chaos and fractal complexity in the dynamics of cardiovascular behavior: perspectives on a new frontier. Vijay Sharma. Open Cardiovasc Med J, 2009 Oct 09; 3. PMID: 19812706 Free PMC article.
Topological properties of co-occurrence networks in published gene expression signatures. Heiko Muller, Francesco Acquati. Bioinform Biol Insights, 2008 Jan 01; 2. PMID: 19812777 Free PMC article.
Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs. Marc-Thorsten Hütt, Annick Lesne. Front Neuroinform, 2009 Oct 15; 3. PMID: 19826610 Free PMC article.
Evolution of biomolecular networks: lessons from metabolic and protein interactions. Takuji Yamada, Peer Bork. Nat Rev Mol Cell Biol, 2009 Oct 24; 10(11). PMID: 19851337 Review.
Partial Correlation Estimation by Joint Sparse Regression Models. Jie Peng, Pei Wang, Nengfeng Zhou, Ji Zhu. J Am Stat Assoc, 2009 Nov 03; 104(486). PMID: 19881892 Free PMC article. Highly Cited.
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Carlos Llorens, Alfonso Muñoz-Pomer, +2 authors, Lucia Bernad, Hector Botella, Andrés Moya. less Biol Direct, 2009 Nov 04; 4. PMID: 19883502 Free PMC article.
Elucidation of functional consequences of signalling pathway interactions. Adaoha E C Ihekwaba, Phuong T Nguyen, Corrado Priami. BMC Bioinformatics, 2009 Nov 10; 10. PMID: 19895694 Free PMC article.
Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase. Carmen Pin, Matthew D Rolfe, +4 authors, József Baranyi. less BMC Syst Biol, 2009 Nov 18; 3. PMID: 19917103 Free PMC article.
Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors. Min Zhao, Hong Qu. BMC Genomics, 2010 Jan 09; 10 Suppl 3. PMID: 19958496 Free PMC article.
Temporal development and collapse of an Arctic plant-pollinator network. Clementine Pradal, Jens M Olesen, Carsten Wiuf. BMC Ecol, 2009 Dec 08; 9. PMID: 19961607 Free PMC article.
Expression-based network biology identifies alteration in key regulatory pathways of type 2 diabetes and associated risk/complications. Urmi Sengupta, Sanchaita Ukil, Nevenka Dimitrova, Shipra Agrawal. PLoS One, 2009 Dec 10; 4(12). PMID: 19997558 Free PMC article.
Gene-centered regulatory networks. H Efsun Arda, Albertha J M Walhout. Brief Funct Genomics, 2009 Dec 17; 9(1). PMID: 20008400 Free PMC article. Review.
Population structure induces a symmetry breaking favoring the emergence of cooperation. Jorge M Pacheco, Flávio L Pinheiro, Francisco C Santos. PLoS Comput Biol, 2009 Dec 17; 5(12). PMID: 20011116 Free PMC article.
Resting network plasticity following brain injury. Toru Nakamura, Frank G Hillary, Bharat B Biswal. PLoS One, 2009 Dec 17; 4(12). PMID: 20011533 Free PMC article.
A large scale analysis of information-theoretic network complexity measures using chemical structures. Matthias Dehmer, Nicola Barbarini, Kurt Varmuza, Armin Graber. PLoS One, 2009 Dec 18; 4(12). PMID: 20016828 Free PMC article.
Multiscale mobility networks and the spatial spreading of infectious diseases. Duygu Balcan, Vittoria Colizza, +3 authors, Alessandro Vespignani. less Proc Natl Acad Sci U S A, 2009 Dec 19; 106(51). PMID: 20018697 Free PMC article. Highly Cited.
Reducing in fl uenza spreading over the airline network. Jose Marcelino, Marcus Kaiser. PLoS Curr, 2009 Dec 22; 1. PMID: 20020673 Free PMC article.
Comparison of characteristics between region-and voxel-based network analyses in resting-state fMRI data. Satoru Hayasaka, Paul J Laurienti. Neuroimage, 2009 Dec 23; 50(2). PMID: 20026219 Free PMC article. Highly Cited.
Tradeoff between stability and multispecificity in the design of promiscuous proteins. Menachem Fromer, Julia M Shifman. PLoS Comput Biol, 2009 Dec 31; 5(12). PMID: 20041208 Free PMC article.
The complex network of global cargo ship movements. Pablo Kaluza, Andrea Kölzsch, Michael T Gastner, Bernd Blasius. J R Soc Interface, 2010 Jan 21; 7(48). PMID: 20086053 Free PMC article.
The 'Tyranny of choices' in the ingestion-controlling network. Michael Myslobodsky. Obes Facts, 2010 Jan 22; 2(6). PMID: 20090389 Free PMC article.
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information. Svetlana Bulashevska, Alla Bulashevska, Roland Eils. BMC Bioinformatics, 2010 Jan 27; 11. PMID: 20100321 Free PMC article.
Searching of code space for an error-minimized genetic code via codon capture leads to failure, or requires at least 20 improving codon reassignments via the ambiguous intermediate mechanism. Steven E Massey. J Mol Evol, 2010 Jan 29; 70(1). PMID: 20107777
Modelling celullar communication with scale-free networks. Radu Dobrescu, Victor Purcărea. J Med Life, 2008 Apr 01; 1(2). PMID: 20108462 Free PMC article.
Network based models for biological applications. Radu Dobrescu, Victor Purcărea. J Med Life, 2010 Jan 30; 2(2). PMID: 20108537 Free PMC article. Review.
A temporal precedence based clustering method for gene expression microarray data. Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Wollaston. BMC Bioinformatics, 2010 Feb 02; 11. PMID: 20113513 Free PMC article.
Understanding protein non-folding. Vladimir N Uversky, A Keith Dunker. Biochim Biophys Acta, 2010 Feb 02; 1804(6). PMID: 20117254 Free PMC article. Highly Cited. Review.
A network-theoretic approach for decompositional translation across Open Biological Ontologies. Chintan O Patel, James J Cimino. J Biomed Inform, 2010 Feb 11; 43(4). PMID: 20144734 Free PMC article.
Stochasticity versus determinism: consequences for realistic gene regulatory network modelling and evolution. Dafyd J Jenkins, Dov J Stekel. J Mol Evol, 2010 Feb 13; 70(2). PMID: 20151115
Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome. Vladimir A Kuznetsov, Onkar Singh, Piroon Jenjaroenpun. BMC Genomics, 2010 Mar 03; 11 Suppl 1. PMID: 20158869 Free PMC article.
Collective motions and specific effectors: a statistical mechanics perspective on biological regulation. Alessandro Giuliani. BMC Genomics, 2010 Mar 03; 11 Suppl 1. PMID: 20158873 Free PMC article.
Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity. Alexander A Kanapin, Nicola Mulder, Vladimir A Kuznetsov. BMC Genomics, 2010 Mar 03; 11 Suppl 1. PMID: 20158875 Free PMC article.
Fundamental Principles of Network Formation among Preschool Children. David R Schaefer, John M Light, +2 authors, Richard A Fabes, Laura D Hanish, Carol Lynn Martin. less Soc Networks, 2010 Feb 18; 32(1). PMID: 20161606 Free PMC article.
Some features of the spread of epidemics and information on a random graph. Rick Durrett. Proc Natl Acad Sci U S A, 2010 Feb 20; 107(10). PMID: 20167800 Free PMC article.
Universality in protein residue networks. Ernesto Estrada. Biophys J, 2010 Mar 04; 98(5). PMID: 20197043 Free PMC article.
Zsyntax: a formal language for molecular biology with projected applications in text mining and biological prediction. Giovanni Boniolo, Marcello D'Agostino, Pier Paolo Di Fiore. PLoS One, 2010 Mar 09; 5(3). PMID: 20209084 Free PMC article.
Information dynamics shape the sexual networks of Internet-mediated prostitution. Luis E C Rocha, Fredrik Liljeros, Petter Holme. Proc Natl Acad Sci U S A, 2010 Mar 17; 107(13). PMID: 20231480 Free PMC article.
Topological network alignment uncovers biological function and phylogeny. Oleksii Kuchaiev, Tijana Milenkovic, +2 authors, Vesna Memisevic, Wayne Hayes, Natasa Przulj. less J R Soc Interface, 2010 Mar 20; 7(50). PMID: 20236959 Free PMC article.
Revealing strengths and weaknesses of methods for gene network inference. Daniel Marbach, Robert J Prill, +3 authors, Gustavo Stolovitzky. less Proc Natl Acad Sci U S A, 2010 Mar 24; 107(14). PMID: 20308593 Free PMC article. Highly Cited.
Construction and analysis of protein-protein interaction networks. Karthik Raman. Autom Exp, 2010 Mar 26; 2(1). PMID: 20334628 Free PMC article.
Graph theoretical analysis of structural and functional connectivity MRI in normal and pathological brain networks. Maxime Guye, Gaelle Bettus, Fabrice Bartolomei, Patrick J Cozzone. MAGMA, 2010 Mar 30; 23(5-6). PMID: 20349109 Highly Cited. Review.
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. James Chen, Lee Sam, +5 authors, Yves A Lussier. less J Biomed Inform, 2010 Mar 31; 43(3). PMID: 20350617 Free PMC article.
Comparative genomics of metabolic networks of free-living and parasitic eukaryotes. Barbara Nerima, Daniel Nilsson, Pascal Mäser. BMC Genomics, 2010 Apr 02; 11. PMID: 20356377 Free PMC article.
From evidence to inference: probing the evolution of protein interaction networks. Oliver Ratmann, Carsten Wiuf, John W Pinney. HFSP J, 2010 Apr 02; 3(5). PMID: 20357887 Free PMC article.
Evidence for large complex networks of plant short silencing RNAs. Daniel MacLean, Nataliya Elina, +3 authors, David C Baulcombe. less PLoS One, 2010 Apr 03; 5(3). PMID: 20360863 Free PMC article.
Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. Younghee Lee, Xinan Yang, +11 authors, Yves A Lussier. less PLoS Comput Biol, 2010 Apr 07; 6(4). PMID: 20369013 Free PMC article.
Detection of locally over-represented GO terms in protein-protein interaction networks. Mathieu Lavallée-Adam, Benoit Coulombe, Mathieu Blanchette. J Comput Biol, 2010 Apr 10; 17(3). PMID: 20377456 Free PMC article.
Incomplete and noisy network data as a percolation process. Michael P H Stumpf, Carsten Wiuf. J R Soc Interface, 2010 Apr 10; 7(51). PMID: 20378609 Free PMC article.
RNA: state memory and mediator of cellular phenotype. Junhyong Kim, James Eberwine. Trends Cell Biol, 2010 Apr 13; 20(6). PMID: 20382532 Free PMC article.
Multifractal network generator. Gergely Palla, László Lovász, Tamás Vicsek. Proc Natl Acad Sci U S A, 2010 Apr 14; 107(17). PMID: 20385847 Free PMC article.
Complex networks: The fragility of interdependency. Alessandro Vespignani. Nature, 2010 Apr 16; 464(7291). PMID: 20393545
Catastrophic cascade of failures in interdependent networks. Sergey V Buldyrev, Roni Parshani, +2 authors, Gerald Paul, H Eugene Stanley, Shlomo Havlin. less Nature, 2010 Apr 16; 464(7291). PMID: 20393559 Highly Cited.
Systems biology in heart diseases. G E Louridas, I E Kanonidis, K G Lourida. Hippokratia, 2010 Apr 23; 14(1). PMID: 20411053 Free PMC article.
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks. Koon-Kiu Yan, Gang Fang, +2 authors, Nitin Bhardwaj, Roger P Alexander, Mark Gerstein. less Proc Natl Acad Sci U S A, 2010 May 05; 107(20). PMID: 20439753 Free PMC article.
Scale-free topology of the CA3 hippocampal network: a novel method to analyze functional neuronal assemblies. Xiaoli Li, Gaoxiang Ouyang, +2 authors, Astushi Usami, Yuji Ikegaya, Attila Sik. less Biophys J, 2010 May 06; 98(9). PMID: 20441736 Free PMC article.
Functional connectivity density mapping. Dardo Tomasi, Nora D Volkow. Proc Natl Acad Sci U S A, 2010 May 12; 107(21). PMID: 20457896 Free PMC article. Highly Cited.
Modularity and anti-modularity in networks with arbitrary degree distribution. Arend Hintze, Christoph Adami. Biol Direct, 2010 May 13; 5. PMID: 20459629 Free PMC article.
Evolution of metabolic network organization. Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A Buck. BMC Syst Biol, 2010 May 13; 4. PMID: 20459825 Free PMC article.
Hub promiscuity in protein-protein interaction networks. Ashwini Patil, Kengo Kinoshita, Haruki Nakamura. Int J Mol Sci, 2010 May 19; 11(4). PMID: 20480050 Free PMC article. Review.
Microdynamics and criticality of adaptive regulatory networks. Ben D MacArthur, Rubén J Sánchez-García, Avi Ma'ayan. Phys Rev Lett, 2010 May 21; 104(16). PMID: 20482087 Free PMC article.
A human functional protein interaction network and its application to cancer data analysis. Guanming Wu, Xin Feng, Lincoln Stein. Genome Biol, 2010 May 21; 11(5). PMID: 20482850 Free PMC article. Highly Cited.
Network synchronization landscape reveals compensatory structures, quantization, and the positive effect of negative interactions. Takashi Nishikawa, Adilson E Motter. Proc Natl Acad Sci U S A, 2010 May 22; 107(23). PMID: 20489183 Free PMC article.
Network-based modeling of the human gut microbiome. Ammar Naqvi, Huzefa Rangwala, Ali Keshavarzian, Patrick Gillevet. Chem Biodivers, 2010 May 22; 7(5). PMID: 20491063 Free PMC article.
Inferring the physical connectivity of complex networks from their functional dynamics. Hung Xuan Ta, Chang No Yoon, Liisa Holm, Seung Kee Han. BMC Syst Biol, 2010 May 27; 4. PMID: 20500902 Free PMC article.
Edge direction and the structure of networks. Jacob G Foster, David V Foster, Peter Grassberger, Maya Paczuski. Proc Natl Acad Sci U S A, 2010 May 28; 107(24). PMID: 20505119 Free PMC article.
Reverse engineering large-scale genetic networks: synthetic versus real data. Luwen Zhang, Mei Xiao, Yong Wang, Wu Zhang. J Genet, 2010 May 28; 89(1). PMID: 20505249
A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes. Andy Lin, Richard T Wang, +2 authors, Sangtae Ahn, Christopher C Park, Desmond J Smith. less Genome Res, 2010 May 29; 20(8). PMID: 20508145 Free PMC article.
Duplicability of self-interacting human genes. Asa Pérez-Bercoff, Takashi Makino, Aoife McLysaght. BMC Evol Biol, 2010 Jun 01; 10. PMID: 20509897 Free PMC article.
Protein folded states are kinetic hubs. Gregory R Bowman, Vijay S Pande. Proc Natl Acad Sci U S A, 2010 Jun 11; 107(24). PMID: 20534497 Free PMC article.
Insights from unifying modern approximations to infections on networks. Thomas House, Matt J Keeling. J R Soc Interface, 2010 Jun 12; 8(54). PMID: 20538755 Free PMC article.
Detecting network modules in fMRI time series: a weighted network analysis approach. Jeanette A Mumford, Steve Horvath, +3 authors, Russell A Poldrack. less Neuroimage, 2010 Jun 18; 52(4). PMID: 20553896 Free PMC article.
A Poisson model for random multigraphs. John M O Ranola, Sangtae Ahn, +2 authors, Mary Sehl, Desmond J Smith, Kenneth Lange. less Bioinformatics, 2010 Jun 18; 26(16). PMID: 20554690 Free PMC article.
Active transport and cluster formation on 2D networks. P Greulich, L Santen. Eur Phys J E Soft Matter, 2010 Jun 18; 32(2). PMID: 20556462
Novel topological descriptors for analyzing biological networks. Matthias M Dehmer, Nicola N Barbarini, Kurt K Varmuza, Armin A Graber. BMC Struct Biol, 2010 Jun 23; 10. PMID: 20565796 Free PMC article.
ATP-sensitive K(+) channel-deficient dilated cardiomyopathy proteome remodeled by embryonic stem cell therapy. Jelena Zlatkovic-Lindor, D Kent Arrell, +2 authors, Satsuki Yamada, Timothy J Nelson, Andre Terzic. less Stem Cells, 2010 Jun 24; 28(8). PMID: 20572010 Free PMC article.
Identifying differentially regulated subnetworks from phosphoproteomic data. Martin Klammer, Klaus Godl, Andreas Tebbe, Christoph Schaab. BMC Bioinformatics, 2010 Jun 30; 11. PMID: 20584295 Free PMC article.
Social networks shape the transmission dynamics of hepatitis C virus. Camila Malta Romano, Isabel M V Guedes de Carvalho-Mello, +7 authors, VGDN Consortium. less PLoS One, 2010 Jun 30; 5(6). PMID: 20585651 Free PMC article.
Using network science to evaluate exercise-associated brain changes in older adults. Jonathan H Burdette, Paul J Laurienti, +8 authors, W Jack Rejeski. less Front Aging Neurosci, 2010 Jul 01; 2. PMID: 20589103 Free PMC article. Highly Cited.
Phase-response curves and synchronized neural networks. Roy M Smeal, G Bard Ermentrout, John A White. Philos Trans R Soc Lond B Biol Sci, 2010 Jul 07; 365(1551). PMID: 20603361 Free PMC article.
Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. David van Dijk, Gokhan Ertaylan, Charles Ab Boucher, Peter Ma Sloot. BMC Syst Biol, 2010 Jul 17; 4. PMID: 20633292 Free PMC article.
Multirelational organization of large-scale social networks in an online world. Michael Szell, Renaud Lambiotte, Stefan Thurner. Proc Natl Acad Sci U S A, 2010 Jul 21; 107(31). PMID: 20643965 Free PMC article. Highly Cited.
Googling social interactions: web search engine based social network construction. Sang Hoon Lee, Pan-Jun Kim, Yong-Yeol Ahn, Hawoong Jeong. PLoS One, 2010 Jul 27; 5(7). PMID: 20657762 Free PMC article.
Imitation dynamics of vaccination behaviour on social networks. Feng Fu, Daniel I Rosenbloom, Long Wang, Martin A Nowak. Proc Biol Sci, 2010 Jul 30; 278(1702). PMID: 20667876 Free PMC article.
Drug discovery in a multidimensional world: systems, patterns, and networks. Joel T Dudley, Eric Schadt, +2 authors, Marina Sirota, Atul J Butte, Euan Ashley. less J Cardiovasc Transl Res, 2010 Aug 03; 3(5). PMID: 20677029
De novo evolution of complex, global and hierarchical gene regulatory mechanisms. Dafyd J Jenkins, Dov J Stekel. J Mol Evol, 2010 Aug 04; 71(2). PMID: 20680619 Free PMC article.
Precipitation-generated oscillations in open cellular cloud fields. Graham Feingold, Ilan Koren, +2 authors, Hailong Wang, Huiwen Xue, Wm Alan Brewer. less Nature, 2010 Aug 13; 466(7308). PMID: 20703303
Fractal topology of gene promoter networks at phase transitions. Preston R Aldrich, Robert K Horsley, +2 authors, Yousuf A Ahmed, Joseph J Williamson, Stefan M Turcic. less Gene Regul Syst Bio, 2010 Aug 13; 4. PMID: 20703327 Free PMC article.
Nonuniversal power law scaling in the probability distribution of scientific citations. George J Peterson, Steve Pressé, Ken A Dill. Proc Natl Acad Sci U S A, 2010 Sep 02; 107(37). PMID: 20805513 Free PMC article.
Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods. Luis P Fernandes, Alessia Annibale, +2 authors, Jens Kleinjung, Anthony C C Coolen, Franca Fraternali. less PLoS One, 2010 Sep 02; 5(8). PMID: 20805870 Free PMC article.
A new measure of centrality for brain networks. Karen E Joyce, Paul J Laurienti, Jonathan H Burdette, Satoru Hayasaka. PLoS One, 2010 Sep 03; 5(8). PMID: 20808943 Free PMC article.
The development of human functional brain networks. Jonathan D Power, Damien A Fair, Bradley L Schlaggar, Steven E Petersen. Neuron, 2010 Sep 10; 67(5). PMID: 20826306 Free PMC article. Highly Cited. Review.
The Associative Structure of Language: Contextual Diversity in Early Word Learning. Thomas T Hills, Josita Maouene, Brian Riordan, Linda B Smith. J Mem Lang, 2010 Sep 14; 63(3). PMID: 20835374 Free PMC article.
Algorithmic and analytical methods in network biology. Mehmet Koyutürk. Wiley Interdiscip Rev Syst Biol Med, 2010 Sep 14; 2(3). PMID: 20836029 Free PMC article. Review.
Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure. A Annibale, Acc Coolen, +2 authors, Lp Fernandes, F Fraternali, J Kleinjung. less J Phys A Math Gen, 2010 Sep 17; 42(48). PMID: 20844594 Free PMC article.
Synthetic lethal screen of an EGFR-centered network to improve targeted therapies. Igor Astsaturov, Vladimir Ratushny, +14 authors, Erica A Golemis. less Sci Signal, 2010 Sep 23; 3(140). PMID: 20858866 Free PMC article.
Finding the "dark matter" in human and yeast protein network prediction and modelling. Juan A G Ranea, Ian Morilla, +5 authors, Christine Orengo. less PLoS Comput Biol, 2010 Oct 05; 6(9). PMID: 20885791 Free PMC article.
MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features. Juan Xu, Chuan-Xing Li, +11 authors, Xia Li. less Nucleic Acids Res, 2010 Oct 12; 39(3). PMID: 20929877 Free PMC article. Highly Cited.
Application of computational approaches to study signalling networks of nuclear and Tyrosine kinase receptors. Mouna Choura, Ahmed Rebaï. Biol Direct, 2010 Oct 13; 5. PMID: 20937105 Free PMC article.
Bankruptcy risk model and empirical tests. Boris Podobnik, Davor Horvatic, +2 authors, H Eugene Stanley. less Proc Natl Acad Sci U S A, 2010 Oct 13; 107(43). PMID: 20937903 Free PMC article.
Influence of the time scale on the construction of financial networks. Frank Emmert-Streib, Matthias Dehmer. PLoS One, 2010 Oct 16; 5(9). PMID: 20949124 Free PMC article.
White matter maturation reshapes structural connectivity in the late developing human brain. P Hagmann, O Sporns, +6 authors, P E Grant. less Proc Natl Acad Sci U S A, 2010 Oct 20; 107(44). PMID: 20956328 Free PMC article. Highly Cited.
Planning for the next influenza H1N1 season: a modelling study. Fabrice Carrat, Camille Pelat, +2 authors, Daniel Levy-Bruhl, Isabelle Bonmarin, Nathanael Lapidus. less BMC Infect Dis, 2010 Oct 23; 10. PMID: 20964814 Free PMC article.
Individualization as driving force of clustering phenomena in humans. Michael Mäs, Andreas Flache, Dirk Helbing. PLoS Comput Biol, 2010 Oct 27; 6(10). PMID: 20975937 Free PMC article.
Disrupted modularity and local connectivity of brain functional networks in childhood-onset schizophrenia. Aaron F Alexander-Bloch, Nitin Gogtay, +6 authors, Edward T Bullmore. less Front Syst Neurosci, 2010 Oct 30; 4. PMID: 21031030 Free PMC article. Highly Cited.
Predicting direct protein interactions from affinity purification mass spectrometry data. Ethan Dh Kim, Ashish Sabharwal, Adrian R Vetta, Mathieu Blanchette. Algorithms Mol Biol, 2010 Nov 03; 5. PMID: 21034440 Free PMC article.
How wealth accumulation can promote cooperation. Thomas Chadefaux, Dirk Helbing. PLoS One, 2010 Nov 05; 5(10). PMID: 21048947 Free PMC article.
Comparing brain networks of different size and connectivity density using graph theory. Bernadette C M van Wijk, Cornelis J Stam, Andreas Daffertshofer. PLoS One, 2010 Nov 10; 5(10). PMID: 21060892 Free PMC article. Highly Cited.
Module detection in complex networks using integer optimisation. Gang Xu, Laura Bennett, Lazaros G Papageorgiou, Sophia Tsoka. Algorithms Mol Biol, 2010 Nov 16; 5. PMID: 21073720 Free PMC article.
Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia. Juliette J Kahle, Natali Gulbahce, +4 authors, Huda Y Zoghbi. less Hum Mol Genet, 2010 Nov 17; 20(3). PMID: 21078624 Free PMC article.
A scale-free structure prior for graphical models with applications in functional genomics. Paul Sheridan, Takeshi Kamimura, Hidetoshi Shimodaira. PLoS One, 2010 Nov 17; 5(11). PMID: 21079769 Free PMC article.
Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes. Takeshi Hase, Yoshihito Niimura, Hiroshi Tanaka. BMC Evol Biol, 2010 Nov 23; 10. PMID: 21087510 Free PMC article.
Ultrafast method for mapping local functional connectivity hubs in the human brain. Dardo Tomasi, Nora D Volkow. Annu Int Conf IEEE Eng Med Biol Soc, 2010 Nov 26; 2010. PMID: 21095749 Free PMC article.
Intermittent hypoxia mobilizes bone marrow-derived very small embryonic-like stem cells and activates developmental transcriptional programs in mice. Sina A Gharib, Ehab A Dayyat, +4 authors, David Gozal. less Sleep, 2010 Nov 26; 33(11). PMID: 21102985 Free PMC article.
Self-organization, condensation, and annihilation of topological vortices and antivortices in a multiferroic. S C Chae, Y Horibe, +3 authors, D Y Jeong, S Rodan, N Lee, S-W Cheong. less Proc Natl Acad Sci U S A, 2010 Dec 01; 107(50). PMID: 21115846 Free PMC article.
Empiricism and theorizing in epidemiology and social network analysis. Richard Rothenberg, Elizabeth Costenbader. Interdiscip Perspect Infect Dis, 2010 Dec 04; 2011. PMID: 21127746 Free PMC article.
Zipf's law leads to Heaps' law: analyzing their relation in finite-size systems. Linyuan Lü, Zi-Ke Zhang, Tao Zhou. PLoS One, 2010 Dec 15; 5(12). PMID: 21152034 Free PMC article.
Network medicine: a network-based approach to human disease. Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet, 2010 Dec 18; 12(1). PMID: 21164525 Free PMC article. Highly Cited. Review.
Assortative mixing in close-packed spatial networks. Deniz Turgut, Ali Rana Atilgan, Canan Atilgan. PLoS One, 2010 Dec 24; 5(12). PMID: 21179578 Free PMC article.
Critical effect of dependency groups on the function of networks. Roni Parshani, Sergey V Buldyrev, Shlomo Havlin. Proc Natl Acad Sci U S A, 2010 Dec 31; 108(3). PMID: 21191103 Free PMC article.
Balancing robustness against the dangers of multiple attractors in a Hopfield-type model of biological attractors. Ron C Anafi, Jason H T Bates. PLoS One, 2011 Jan 05; 5(12). PMID: 21203505 Free PMC article.
High-confidence discovery of genetic network regulators in expression quantitative trait loci data. Christine W Duarte, Zhao-Bang Zeng. Genetics, 2011 Jan 08; 187(3). PMID: 21212238 Free PMC article.
GraphCrunch 2: Software tool for network modeling, alignment and clustering. Oleksii Kuchaiev, Aleksandar Stevanović, Wayne Hayes, Nataša Pržulj. BMC Bioinformatics, 2011 Jan 20; 12. PMID: 21244715 Free PMC article.
Using an agent-based model to analyze the dynamic communication network of the immune response. Virginia A Folcik, Gordon Broderick, +6 authors, Clay B Marsh. less Theor Biol Med Model, 2011 Jan 21; 8. PMID: 21247471 Free PMC article.
Dual-phase evolution in complex adaptive systems. Greg Paperin, David G Green, Suzanne Sadedin. J R Soc Interface, 2011 Jan 21; 8(58). PMID: 21247947 Free PMC article. Review.
Synchronous bursts on scale-free neuronal networks with attractive and repulsive coupling. Qingyun Wang, Guanrong Chen, Matjaž Perc. PLoS One, 2011 Jan 22; 6(1). PMID: 21253015 Free PMC article.
Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis. Yann Moalic, Sophie Arnaud-Haond, +2 authors, Cécile Perrin, Gareth A Pearson, Ester A Serrao. less BMC Evol Biol, 2011 Feb 02; 11. PMID: 21281515 Free PMC article.
Association between functional connectivity hubs and brain networks. Dardo Tomasi, Nora D Volkow. Cereb Cortex, 2011 Feb 02; 21(9). PMID: 21282318 Free PMC article. Highly Cited.
Automatic network fingerprinting through single-node motifs. Christoph Echtermeyer, Luciano da Fontoura Costa, Francisco A Rodrigues, Marcus Kaiser. PLoS One, 2011 Feb 08; 6(1). PMID: 21297963 Free PMC article.
Integrative features of the yeast phosphoproteome and protein-protein interaction map. Nozomu Yachie, Rintaro Saito, +2 authors, Naoyuki Sugiyama, Masaru Tomita, Yasushi Ishihama. less PLoS Comput Biol, 2011 Feb 08; 7(1). PMID: 21298081 Free PMC article.
Structural properties of the Caenorhabditis elegans neuronal network. Lav R Varshney, Beth L Chen, +2 authors, Eric Paniagua, David H Hall, Dmitri B Chklovskii. less PLoS Comput Biol, 2011 Feb 10; 7(2). PMID: 21304930 Free PMC article. Highly Cited.
Who is the best player ever? A complex network analysis of the history of professional tennis. Filippo Radicchi. PLoS One, 2011 Feb 23; 6(2). PMID: 21339809 Free PMC article.
Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect? Felipe Gerhard, Gordon Pipa, +2 authors, Bruss Lima, Sergio Neuenschwander, Wulfram Gerstner. less Front Comput Neurosci, 2011 Feb 24; 5. PMID: 21344015 Free PMC article.
Understanding the implementation of evidence-based care: a structural network approach. Michael L Parchman, Caterina M Scoglio, Phillip Schumm. Implement Sci, 2011 Feb 26; 6. PMID: 21349194 Free PMC article.
Mitigation of malicious attacks on networks. Christian M Schneider, André A Moreira, +2 authors, José S Andrade, Shlomo Havlin, Hans J Herrmann. less Proc Natl Acad Sci U S A, 2011 Mar 04; 108(10). PMID: 21368159 Free PMC article. Highly Cited.
The non-random brain: efficiency, economy, and complex dynamics. Olaf Sporns. Front Comput Neurosci, 2011 Mar 04; 5. PMID: 21369354 Free PMC article.
A synaptic organizing principle for cortical neuronal groups. Rodrigo Perin, Thomas K Berger, Henry Markram. Proc Natl Acad Sci U S A, 2011 Mar 09; 108(13). PMID: 21383177 Free PMC article. Highly Cited.
Interactome networks and human disease. Marc Vidal, Michael E Cusick, Albert-László Barabási. Cell, 2011 Mar 19; 144(6). PMID: 21414488 Free PMC article. Highly Cited. Review.
Statistical inference to advance network models in epidemiology. David Welch, Shweta Bansal, David R Hunter. Epidemics, 2011 Mar 23; 3(1). PMID: 21420658 Free PMC article.
Fractals in the nervous system: conceptual implications for theoretical neuroscience. Gerhard Werner. Front Physiol, 2010 Jan 01; 1. PMID: 21423358 Free PMC article.
Storage of Phase-Coded Patterns via STDP in Fully-Connected and Sparse Network: A Study of the Network Capacity. Silvia Scarpetta, Antonio de Candia, Ferdinando Giacco. Front Synaptic Neurosci, 2010 Jan 01; 2. PMID: 21423518 Free PMC article.
The brain as a distributed intelligent processing system: an EEG study. Armando Freitas da Rocha, Fábio Theoto Rocha, Eduardo Massad. PLoS One, 2011 Mar 23; 6(3). PMID: 21423657 Free PMC article.
Clustering coefficients of lexical neighborhoods: Does neighborhood structure matter in spoken word recognition? Nicholas Altieri, Thomas Gruenenfelder, David B Pisoni. Ment Lex, 2011 Mar 23; 5(1). PMID: 21423865 Free PMC article.
Mass-balanced randomization of metabolic networks. Georg Basler, Oliver Ebenhöh, Joachim Selbig, Zoran Nikoloski. Bioinformatics, 2011 Mar 26; 27(10). PMID: 21436128 Free PMC article.
Pathogens, social networks, and the paradox of transmission scaling. Matthew J Ferrari, Sarah E Perkins, Laura W Pomeroy, Ottar N Bjørnstad. Interdiscip Perspect Infect Dis, 2011 Mar 26; 2011. PMID: 21436998 Free PMC article.
Methods for generating complex networks with selected structural properties for simulations: a review and tutorial for neuroscientists. Brenton J Prettejohn, Matthew J Berryman, Mark D McDonnell. Front Comput Neurosci, 2011 Mar 29; 5. PMID: 21441986 Free PMC article.
The role of actin in capacitation-related signaling: an in silico and in vitro study. Nicola Bernabò, Paolo Berardinelli, +4 authors, Barbara Barboni. less BMC Syst Biol, 2011 Apr 01; 5. PMID: 21450097 Free PMC article.
The role of nonlinearity in computing graph-theoretical properties of resting-state functional magnetic resonance imaging brain networks. D Hartman, J Hlinka, +2 authors, M Palus, D Mantini, M Corbetta. less Chaos, 2011 Apr 05; 21(1). PMID: 21456833 Free PMC article.
A social network analysis of treatment discoveries in cancer. Athanasios Tsalatsanis, Laura Barnes, +2 authors, Iztok Hozo, John Skvoretz, Benjamin Djulbegovic. less PLoS One, 2011 Apr 06; 6(3). PMID: 21464896 Free PMC article.
Statistically validated networks in bipartite complex systems. Michele Tumminello, Salvatore Miccichè, +2 authors, Fabrizio Lillo, Jyrki Piilo, Rosario N Mantegna. less PLoS One, 2011 Apr 13; 6(3). PMID: 21483858 Free PMC article.
The effect of individual variation on the structure and function of interaction networks in harvester ants. Noa Pinter-Wollman, Roy Wollman, +2 authors, Adam Guetz, Susan Holmes, Deborah M Gordon. less J R Soc Interface, 2011 Apr 15; 8(64). PMID: 21490001 Free PMC article.
Modification of gene duplicability during the evolution of protein interaction network. Matteo D'Antonio, Francesca D Ciccarelli. PLoS Comput Biol, 2011 Apr 15; 7(4). PMID: 21490719 Free PMC article.
Transition to parenthood: the role of social interaction and endogenous networks. Belinda Aparicio Diaz, Thomas Fent, Alexia Prskawetz, Laura Bernardi. Demography, 2011 Apr 28; 48(2). PMID: 21523518
Using graph theory to analyze biological networks. Georgios A Pavlopoulos, Maria Secrier, +5 authors, Pantelis G Bagos. less BioData Min, 2011 Apr 30; 4. PMID: 21527005 Free PMC article. Highly Cited.
Network models: an underutilized tool in wildlife epidemiology? Meggan E Craft, Damien Caillaud. Interdiscip Perspect Infect Dis, 2011 Apr 30; 2011. PMID: 21527981 Free PMC article.
Network archaeology: uncovering ancient networks from present-day interactions. Saket Navlakha, Carl Kingsford. PLoS Comput Biol, 2011 May 03; 7(4). PMID: 21533211 Free PMC article.
Emergence of physiological oscillation frequencies in a computer model of neocortex. Samuel A Neymotin, Heekyung Lee, +2 authors, Eunhye Park, André A Fenton, William W Lytton. less Front Comput Neurosci, 2011 May 05; 5. PMID: 21541305 Free PMC article.
Properties of metabolic graphs: biological organization or representation artifacts? Wanding Zhou, Luay Nakhleh. BMC Bioinformatics, 2011 May 06; 12. PMID: 21542923 Free PMC article.
Inference of gene regulatory networks from time series by Tsallis entropy. Fabrício Martins Lopes, Evaldo A de Oliveira, Roberto M Cesar. BMC Syst Biol, 2011 May 07; 5. PMID: 21545720 Free PMC article.
Finding statistically significant communities in networks. Andrea Lancichinetti, Filippo Radicchi, José J Ramasco, Santo Fortunato. PLoS One, 2011 May 12; 6(4). PMID: 21559480 Free PMC article. Highly Cited.
Controllability of complex networks. Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási. Nature, 2011 May 13; 473(7346). PMID: 21562557 Highly Cited.
Transcriptional landscape of bone marrow-derived very small embryonic-like stem cells during hypoxia. Sina A Gharib, Abdelnaby Khalyfa, +4 authors, David Gozal. less Respir Res, 2011 May 17; 12. PMID: 21569252 Free PMC article.
Fast network centrality analysis using GPUs. Zhiao Shi, Bing Zhang. BMC Bioinformatics, 2011 May 17; 12. PMID: 21569426 Free PMC article.
Frailty effects in networks: comparison and identification of individual heterogeneity versus preferential attachment in evolving networks. Birgitte Freiesleben de Blasio, Taral Guldahl Seierstad, Odd O Aalen. J R Stat Soc Ser C Appl Stat, 2011 May 17; 60(2). PMID: 21572513 Free PMC article.
Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions. Bo Li, Weiguo Cao, Jizhong Zhou, Feng Luo. BMC Syst Biol, 2011 May 19; 5. PMID: 21586150 Free PMC article.
Small worlds and semantic network growth in typical and late talkers. Nicole Beckage, Linda Smith, Thomas Hills. PLoS One, 2011 May 19; 6(5). PMID: 21589924 Free PMC article.
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. George W Bassel, Hui Lan, +6 authors, Nicholas J Provart. less Proc Natl Acad Sci U S A, 2011 May 20; 108(23). PMID: 21593420 Free PMC article. Highly Cited.
Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). W Walter Lorenz, Rob Alba, +3 authors, Jeffrey F D Dean. less BMC Genomics, 2011 May 26; 12. PMID: 21609476 Free PMC article.
Functional connectivity hubs in the human brain. Dardo Tomasi, Nora D Volkow. Neuroimage, 2011 May 26; 57(3). PMID: 21609769 Free PMC article. Highly Cited.
A curve shaped description of large networks, with an application to the evaluation of network models. Xianchuang Su, Xiaogang Jin, +2 authors, Yong Min, Linjian Mo, Jiangang Yang. less PLoS One, 2011 May 26; 6(5). PMID: 21611192 Free PMC article.
Dynamical patterns of cattle trade movements. Paolo Bajardi, Alain Barrat, +2 authors, Fabrizio Natale, Lara Savini, Vittoria Colizza. less PLoS One, 2011 Jun 01; 6(5). PMID: 21625633 Free PMC article.
Threshold learning dynamics in social networks. Juan Carlos González-Avella, Victor M Eguíluz, +2 authors, Matteo Marsili, Fernado Vega-Redondo, Maxi San Miguel. less PLoS One, 2011 Jun 04; 6(5). PMID: 21637714 Free PMC article.
Effect of the topology and delayed interactions in neuronal networks synchronization. Toni Pérez, Guadalupe C Garcia, +3 authors, Claudio Mirasso. less PLoS One, 2011 Jun 04; 6(5). PMID: 21637767 Free PMC article.
Failure tolerance of motif structure in biological networks. Baharan Mirzasoleiman, Mahdi Jalili. PLoS One, 2011 Jun 04; 6(5). PMID: 21637829 Free PMC article.
Complex systems: Unzipping Zipf's law. Lada Adamic. Nature, 2011 Jun 10; 474(7350). PMID: 21654791
Axelrod's metanorm games on networks. José M Galán, Maciej M Łatek, Seyed M Mussavi Rizi. PLoS One, 2011 Jun 10; 6(5). PMID: 21655211 Free PMC article.
Risk of collective failure provides an escape from the tragedy of the commons. Francisco C Santos, Jorge M Pacheco. Proc Natl Acad Sci U S A, 2011 Jun 11; 108(26). PMID: 21659631 Free PMC article.
Network Sampling and Classification:An Investigation of Network Model Representations. Edoardo M Airoldi, Xue Bai, Kathleen M Carley. Decis Support Syst, 2011 Jun 15; 51(3). PMID: 21666773 Free PMC article.
Wave speed in excitable random networks with spatially constrained connections. Nikita Vladimirov, Roger D Traub, Yuhai Tu. PLoS One, 2011 Jun 16; 6(6). PMID: 21674028 Free PMC article.
Generative probabilistic models for protein-protein interaction networks--the biclique perspective. Regev Schweiger, Michal Linial, Nathan Linial. Bioinformatics, 2011 Jun 21; 27(13). PMID: 21685063 Free PMC article.
A network of genes, genetic disorders, and brain areas. Satoru Hayasaka, Christina E Hugenschmidt, Paul J Laurienti. PLoS One, 2011 Jun 23; 6(6). PMID: 21695164 Free PMC article.
Structural influence of gene networks on their inference: analysis of C3NET. Gökmen Altay, Frank Emmert-Streib. Biol Direct, 2011 Jun 24; 6. PMID: 21696592 Free PMC article.
Node vulnerability under finite perturbations in complex networks. Ricardo Gutiérrez, Francisco Del-Pozo, Stefano Boccaletti. PLoS One, 2011 Jun 24; 6(6). PMID: 21698232 Free PMC article.
Applications of translational bioinformatics in transplantation. P Khatri, M M Sarwal, A J Butte. Clin Pharmacol Ther, 2011 Jul 01; 90(2). PMID: 21716268 Free PMC article.
Direct, physically motivated derivation of the contagion condition for spreading processes on generalized random networks. Peter Sheridan Dodds, Kameron Decker Harris, Joshua L Payne. Phys Rev E Stat Nonlin Soft Matter Phys, 2011 Jul 07; 83(5 Pt 2). PMID: 21728620 Free PMC article.
Exploring brain function from anatomical connectivity. Gorka Zamora-López, Changsong Zhou, Jürgen Kurths. Front Neurosci, 2011 Jul 08; 5. PMID: 21734863 Free PMC article.
Simulating systems genetics data with SysGenSIM. Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente. Bioinformatics, 2011 Jul 09; 27(17). PMID: 21737438 Free PMC article.
Ranking stability and super-stable nodes in complex networks. Gourab Ghoshal, Albert-László Barabási. Nat Commun, 2011 Jul 21; 2. PMID: 21772265
Algebraic distribution of segmental duplication lengths in whole-genome sequence self-alignments. Kun Gao, Jonathan Miller. PLoS One, 2011 Jul 23; 6(7). PMID: 21779315 Free PMC article.
Equal graph partitioning on estimated infection network as an effective epidemic mitigation measure. Jeremy Hadidjojo, Siew Ann Cheong. PLoS One, 2011 Jul 30; 6(7). PMID: 21799777 Free PMC article.
Universal fractal scaling of self-organized networks. Paul J Laurienti, Karen E Joyce, +2 authors, Satoru Hayasaka. less Physica A, 2011 Aug 03; 390(20). PMID: 21808445 Free PMC article.
Collective emotions online and their influence on community life. Anna Chmiel, Julian Sienkiewicz, +4 authors, Janusz A Hołyst. less PLoS One, 2011 Aug 06; 6(7). PMID: 21818302 Free PMC article.
Fast computing betweenness centrality with virtual nodes on large sparse networks. Jing Yang, Yingwu Chen. PLoS One, 2011 Aug 06; 6(7). PMID: 21818337 Free PMC article.
Neuronal homeostasis: time for a change? Timothy O'Leary, David J A Wyllie. J Physiol, 2011 Aug 10; 589(Pt 20). PMID: 21825033 Free PMC article. Review.
Brain network analysis: separating cost from topology using cost-integration. Cedric E Ginestet, Thomas E Nichols, Ed T Bullmore, Andrew Simmons. PLoS One, 2011 Aug 11; 6(7). PMID: 21829437 Free PMC article.
The interplay between microscopic and mesoscopic structures in complex networks. Jörg Reichardt, Roberto Alamino, David Saad. PLoS One, 2011 Aug 11; 6(8). PMID: 21829597 Free PMC article.
Modeling abnormal priming in Alzheimer's patients with a free association network. Javier Borge-Holthoefer, Yamir Moreno, Alex Arenas. PLoS One, 2011 Aug 11; 6(8). PMID: 21829639 Free PMC article.
Parallel adaptive feedback enhances reliability of the Ca2+ signaling system. Ellen Abell, Robert Ahrends, +2 authors, Samuel Bandara, Byung Ouk Park, Mary N Teruel. less Proc Natl Acad Sci U S A, 2011 Aug 17; 108(35). PMID: 21844332 Free PMC article.
Evolutionary versatility of eukaryotic protein domains revealed by their bigram networks. Xueying Xie, Jing Jin, Yongyi Mao. BMC Evol Biol, 2011 Aug 19; 11. PMID: 21849086 Free PMC article.
Emergence of scale-free leadership structure in social recommender systems. Tao Zhou, Matúš Medo, +2 authors, Giulio Cimini, Zi-Ke Zhang, Yi-Cheng Zhang. less PLoS One, 2011 Aug 23; 6(7). PMID: 21857891 Free PMC article.
Pioneer GABA cells comprise a subpopulation of hub neurons in the developing hippocampus. Michel Aimé Picardo, Philippe Guigue, +6 authors, Rosa Cossart. less Neuron, 2011 Aug 27; 71(4). PMID: 21867885 Free PMC article.
Analyzing inner and outer synchronization between two coupled discrete-time networks with time delays. Weigang Sun, Rubin Wang, Weixiang Wang, Jianting Cao. Cogn Neurodyn, 2011 Sep 03; 4(3). PMID: 21886675 Free PMC article.
Semi-Markov graph dynamics. Marco Raberto, Fabio Rapallo, Enrico Scalas. PLoS One, 2011 Sep 03; 6(8). PMID: 21887245 Free PMC article.
Global and local features of semantic networks: evidence from the Hebrew mental lexicon. Yoed N Kenett, Dror Y Kenett, Eshel Ben-Jacob, Miriam Faust. PLoS One, 2011 Sep 03; 6(8). PMID: 21887343 Free PMC article.
Are there laws of genome evolution? Eugene V Koonin. PLoS Comput Biol, 2011 Sep 09; 7(8). PMID: 21901087 Free PMC article.
Identification of candidate genes related to bovine marbling using protein-protein interaction networks. Dajeong Lim, Nam-Kuk Kim, +5 authors, Heebal Kim. less Int J Biol Sci, 2011 Sep 14; 7(7). PMID: 21912507 Free PMC article.
Introduction to network analysis in systems biology. Avi Ma'ayan. Sci Signal, 2011 Sep 16; 4(190). PMID: 21917719 Free PMC article.
Systems biology and the future of medicine. Joseph Loscalzo, Albert-Laszlo Barabasi. Wiley Interdiscip Rev Syst Biol Med, 2011 Sep 20; 3(6). PMID: 21928407 Free PMC article.
Happy aged people are all alike, while every unhappy aged person is unhappy in its own way. Michele Tumminello, Salvatore Miccichè, +4 authors, Rosario N Mantegna. less PLoS One, 2011 Sep 21; 6(9). PMID: 21931596 Free PMC article.
Category theoretic analysis of hierarchical protein materials and social networks. David I Spivak, Tristan Giesa, Elizabeth Wood, Markus J Buehler. PLoS One, 2011 Sep 21; 6(9). PMID: 21931622 Free PMC article.
Characterizing and modeling citation dynamics. Young-Ho Eom, Santo Fortunato. PLoS One, 2011 Oct 04; 6(9). PMID: 21966387 Free PMC article.
Temporal and spatial evolution of brain network topology during the first two years of life. Wei Gao, John H Gilmore, +4 authors, Weili Lin. less PLoS One, 2011 Oct 04; 6(9). PMID: 21966479 Free PMC article. Highly Cited.
Gene networks and haloperidol-induced catalepsy. O D Iancu, P Darakjian, +3 authors, R Hitzemann. less Genes Brain Behav, 2011 Oct 05; 11(1). PMID: 21967164 Free PMC article.
Structural analysis of hubs in human NR-RTK network. Mouna Choura, Ahmed Rebaï. Biol Direct, 2011 Oct 07; 6. PMID: 21974810 Free PMC article.
A differential network approach to exploring differences between biological states: an application to prediabetes. Beatriz Valcárcel, Peter Würtz, +7 authors, Maria de Iorio. less PLoS One, 2011 Oct 08; 6(9). PMID: 21980352 Free PMC article.
Prosperity is associated with instability in dynamical networks. Matteo Cavaliere, Sean Sedwards, +2 authors, Corina E Tarnita, Martin A Nowak, Attila Csikász-Nagy. less J Theor Biol, 2011 Oct 11; 299. PMID: 21983567 Free PMC article.
The BioAssay network and its implications to future therapeutic discovery. Jintao Zhang, Gerald H Lushington, Jun Huan. BMC Bioinformatics, 2011 Oct 26; 12 Suppl 5. PMID: 21988927 Free PMC article.
Clustering in large networks does not promote upstream reciprocity. Naoki Masuda. PLoS One, 2011 Oct 15; 6(10). PMID: 21998641 Free PMC article.
Topological isomorphisms of human brain and financial market networks. Petra E Vértes, Ruth M Nicol, +3 authors, Edward T Bullmore. less Front Syst Neurosci, 2011 Oct 19; 5. PMID: 22007161 Free PMC article.
Chemical basis of metabolic network organization. Qiang Zhu, Tao Qin, +4 authors, Hong-Yu Zhang. less PLoS Comput Biol, 2011 Oct 25; 7(10). PMID: 22022254 Free PMC article.
Social network architecture and the maintenance of deleterious cultural traits. Sam Yeaman, Alana Schick, Laurent Lehmann. J R Soc Interface, 2011 Oct 28; 9(70). PMID: 22031730 Free PMC article.
Non-random walks in monkeys and humans. Denis Boyer, Margaret C Crofoot, Peter D Walsh. J R Soc Interface, 2011 Oct 28; 9(70). PMID: 22031731 Free PMC article.
The network of global corporate control. Stefania Vitali, James B Glattfelder, Stefano Battiston. PLoS One, 2011 Nov 03; 6(10). PMID: 22046252 Free PMC article.
Host centrality in food web networks determines parasite diversity. Tavis K Anderson, Michael V K Sukhdeo. PLoS One, 2011 Nov 03; 6(10). PMID: 22046360 Free PMC article.
The birth-death-mutation process: a new paradigm for fat tailed distributions. Yosef E Maruvka, David A Kessler, Nadav M Shnerb. PLoS One, 2011 Nov 10; 6(11). PMID: 22069453 Free PMC article.
Computation emerges from adaptive synchronization of networking neurons. Massimiliano Zanin, Francisco Del Pozo, Stefano Boccaletti. PLoS One, 2011 Nov 11; 6(11). PMID: 22073167 Free PMC article.
Dissecting phosphorylation networks: lessons learned from yeast. Janine Mok, Xiaowei Zhu, Michael Snyder. Expert Rev Proteomics, 2011 Nov 18; 8(6). PMID: 22087660 Free PMC article. Review.
Physician social networks and variation in prostate cancer treatment in three cities. Craig Evan Pollack, Gary Weissman, +2 authors, Justin Bekelman, Kaijun Liao, Katrina Armstrong. less Health Serv Res, 2011 Nov 19; 47(1 Pt 2). PMID: 22092259 Free PMC article.
Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model. Shinya Ito, Michael E Hansen, +3 authors, John M Beggs. less PLoS One, 2011 Nov 22; 6(11). PMID: 22102894 Free PMC article.
Evolution of a modular software network. Miguel A Fortuna, Juan A Bonachela, Simon A Levin. Proc Natl Acad Sci U S A, 2011 Nov 23; 108(50). PMID: 22106260 Free PMC article.
Identifying and characterizing nodes important to community structure using the spectrum of the graph. Yang Wang, Zengru Di, Ying Fan. PLoS One, 2011 Nov 24; 6(11). PMID: 22110644 Free PMC article.
Influence of network dynamics on the spread of sexually transmitted diseases. Sebastián Risau-Gusman. J R Soc Interface, 2011 Nov 25; 9(71). PMID: 22112655 Free PMC article.
Optimal link removal for epidemic mitigation: a two-way partitioning approach. Eva A Enns, Jeffrey J Mounzer, Margaret L Brandeau. Math Biosci, 2011 Nov 26; 235(2). PMID: 22115862 Free PMC article.
Evolutionary significance of metabolic network properties. Georg Basler, Sergio Grimbs, +2 authors, Oliver Ebenhöh, Joachim Selbig, Zoran Nikoloski. less J R Soc Interface, 2011 Dec 02; 9(71). PMID: 22130553 Free PMC article.
Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores. Xiaoning Qian, Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon. BMC Bioinformatics, 2011 Dec 23; 12 Suppl 10. PMID: 22165903 Free PMC article.
Fast reconfiguration of high-frequency brain networks in response to surprising changes in auditory input. Ruth M Nicol, Sandra C Chapman, +4 authors, Edward T Bullmore. less J Neurophysiol, 2011 Dec 16; 107(5). PMID: 22170972 Free PMC article.
The role of miRNAs in complex formation and control. Wilson Wen Bin Goh, Hirotaka Oikawa, +2 authors, Judy Chia Ghee Sng, Marek Sergot, Limsoon Wong. less Bioinformatics, 2011 Dec 20; 28(4). PMID: 22180412 Free PMC article.
Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7. Xia Wang, Junjie Yue, +4 authors, Long Liang. less Theor Biol Med Model, 2011 Dec 23; 8. PMID: 22188601 Free PMC article.
Renormalization group for critical phenomena in complex networks. S Boettcher, C T Brunson. Front Physiol, 2011 Dec 24; 2. PMID: 22194725 Free PMC article.
Evolution of biological interaction networks: from models to real data. Mark G F Sun, Philip M Kim. Genome Biol, 2011 Dec 30; 12(12). PMID: 22204388 Free PMC article. Review.
RegnANN: Reverse Engineering Gene Networks using Artificial Neural Networks. Marco Grimaldi, Roberto Visintainer, Giuseppe Jurman. PLoS One, 2012 Jan 05; 6(12). PMID: 22216103 Free PMC article.
Common and unique network dynamics in football games. Yuji Yamamoto, Keiko Yokoyama. PLoS One, 2012 Jan 05; 6(12). PMID: 22216336 Free PMC article.
Genome-wide networks of amino acid covariances are common among viruses. Maureen J Donlin, Brandon Szeto, +2 authors, David W Gohara, Rajeev Aurora, John E Tavis. less J Virol, 2012 Jan 13; 86(6). PMID: 22238298 Free PMC article.
Remotely sensed image classification by complex network eigenvalue and connected degree. Mengxi Xu, Chenglin Wei. Comput Math Methods Med, 2012 Jan 14; 2012. PMID: 22242041 Free PMC article.
Tools for protein-protein interaction network analysis in cancer research. Rebeca Sanz-Pamplona, Antoni Berenguer, +6 authors, Víctor Moreno. less Clin Transl Oncol, 2012 Jan 21; 14(1). PMID: 22262713 Review.
Biomolecular self-defense and futility of high-specificity therapeutic targeting. Simon Rosenfeld. Gene Regul Syst Bio, 2012 Jan 25; 5. PMID: 22272063 Free PMC article.
Social networks and cooperation in hunter-gatherers. Coren L Apicella, Frank W Marlowe, James H Fowler, Nicholas A Christakis. Nature, 2012 Jan 28; 481(7382). PMID: 22281599 Free PMC article. Highly Cited.
Beyond statistical significance: implications of network structure on neuronal activity. Ioannis Vlachos, Ad Aertsen, Arvind Kumar. PLoS Comput Biol, 2012 Feb 01; 8(1). PMID: 22291581 Free PMC article.
Tinnitus: network pathophysiology-network pharmacology. Ana B Elgoyhen, Berthold Langguth, Sven Vanneste, Dirk De Ridder. Front Syst Neurosci, 2012 Feb 01; 6. PMID: 22291622 Free PMC article.
Interaction mining and skill-dependent recommendations for multi-objective team composition. Christoph Dorn, Florian Skopik, Daniel Schall, Schahram Dustdar. Data Knowl Eng, 2012 Feb 03; 70(10). PMID: 22298939 Free PMC article.
Identifying gene interaction networks. Gurkan Bebek. Methods Mol Biol, 2012 Feb 07; 850. PMID: 22307715 Free PMC article.
A small world of weak ties provides optimal global integration of self-similar modules in functional brain networks. Lazaros K Gallos, Hernán A Makse, Mariano Sigman. Proc Natl Acad Sci U S A, 2012 Feb 07; 109(8). PMID: 22308319 Free PMC article. Highly Cited.
Combining graph and machine learning methods to analyze differences in functional connectivity across sex. R Casanova, C T Whitlow, +2 authors, B Wagner, M A Espeland, J A Maldjian. less Open Neuroimag J, 2012 Feb 09; 6. PMID: 22312418 Free PMC article.
Reconstruction of metabolic network in the bovine mammary gland tissue. Changfa Wang, Ji Wang, +7 authors, Jifeng Zhong. less Mol Biol Rep, 2012 Feb 14; 39(7). PMID: 22327647
Information Integration to Support Model-Based Policy Informatics. Christopher L Barrett, Stephen Eubank, +3 authors, Samarth Swarup. less Innov J, 2012 Feb 18; 16(1). PMID: 22337756 Free PMC article.
Novel insights through the integration of structural and functional genomics data with protein networks. Declan Clarke, Nitin Bhardwaj, Mark B Gerstein. J Struct Biol, 2012 Feb 22; 179(3). PMID: 22343087 Free PMC article.
Controlling centrality in complex networks. V Nicosia, R Criado, +2 authors, M Romance, G Russo, V Latora. less Sci Rep, 2012 Feb 23; 2. PMID: 22355732 Free PMC article.
Dynamical robustness in complex networks: the crucial role of low-degree nodes. Gouhei Tanaka, Kai Morino, Kazuyuki Aihara. Sci Rep, 2012 Feb 23; 2. PMID: 22355746 Free PMC article.
Discovery of intramolecular signal transduction network based on a new protein dynamics model of energy dissipation. Cheng-Wei Ma, Zhi-Long Xiu, An-Ping Zeng. PLoS One, 2012 Mar 01; 7(2). PMID: 22363664 Free PMC article.
From local to global dilemmas in social networks. Flávio L Pinheiro, Jorge M Pacheco, Francisco C Santos. PLoS One, 2012 Mar 01; 7(2). PMID: 22363804 Free PMC article.
Viruses and interactomes in translation. Laurène Meyniel-Schicklin, Benoît de Chassey, Patrice André, Vincent Lotteau. Mol Cell Proteomics, 2012 Mar 01; 11(7). PMID: 22371486 Free PMC article.
Stability of building gene regulatory networks with sparse autoregressive models. Jagath C Rajapakse, Piyushkumar A Mundra. BMC Bioinformatics, 2012 Mar 06; 12 Suppl 13. PMID: 22373004 Free PMC article.
Dynamics and processing in finite self-similar networks. Simon DeDeo, David C Krakauer. J R Soc Interface, 2012 Mar 02; 9(74). PMID: 22378750 Free PMC article.
A measure of individual role in collective dynamics. Konstantin Klemm, M Ángeles Serrano, Víctor M Eguíluz, Maxi San Miguel. Sci Rep, 2012 Mar 02; 2. PMID: 22379597 Free PMC article.
Finding and removing highly connected individuals using suboptimal vaccines. Beatriz Vidondo, Markus Schwehm, Andrea Bühlmann, Martin Eichner. BMC Infect Dis, 2012 Mar 06; 12. PMID: 22385506 Free PMC article.
The role of structural disorder in the rewiring of protein interactions through evolution. Roberto Mosca, Roland A Pache, Patrick Aloy. Mol Cell Proteomics, 2012 Mar 06; 11(7). PMID: 22389433 Free PMC article.
Biological network motif detection: principles and practice. Elisabeth Wong, Brittany Baur, Saad Quader, Chun-Hsi Huang. Brief Bioinform, 2012 Mar 08; 13(2). PMID: 22396487 Free PMC article.
Inferring epidemic contact structure from phylogenetic trees. Gabriel E Leventhal, Roger Kouyos, +7 authors, Sebastian Bonhoeffer. less PLoS Comput Biol, 2012 Mar 14; 8(3). PMID: 22412361 Free PMC article.
Topological analysis and interactive visualization of biological networks and protein structures. Nadezhda T Doncheva, Yassen Assenov, Francisco S Domingues, Mario Albrecht. Nat Protoc, 2012 Mar 17; 7(4). PMID: 22422314 Highly Cited.
Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus. Marc Hafner, Heinz Koeppl, Didier Gonze. PLoS Comput Biol, 2012 Mar 17; 8(3). PMID: 22423219 Free PMC article.
Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis. Tian Xia, Jiansong Tong, +2 authors, Shailendra S Rathore, Xun Gu, Julie A Dickerson. less BMC Syst Biol, 2012 Mar 20; 6. PMID: 22423977 Free PMC article.
Network evolution: rewiring and signatures of conservation in signaling. Mark G F Sun, Martin Sikora, +2 authors, Michael Costanzo, Charles Boone, Philip M Kim. less PLoS Comput Biol, 2012 Mar 23; 8(3). PMID: 22438796 Free PMC article.
Evolution of opinions on social networks in the presence of competing committed groups. Jierui Xie, Jeffrey Emenheiser, +3 authors, Gyorgy Korniss. less PLoS One, 2012 Mar 27; 7(3). PMID: 22448238 Free PMC article.
A simple model predicts experimental folding rates and a hub-like topology. Thomas J Lane, Vijay S Pande. J Phys Chem B, 2012 Mar 29; 116(23). PMID: 22452581 Free PMC article.
Simple models of human brain functional networks. Petra E Vértes, Aaron F Alexander-Bloch, +3 authors, Edward T Bullmore. less Proc Natl Acad Sci U S A, 2012 Apr 03; 109(15). PMID: 22467830 Free PMC article. Highly Cited.
Hierarchy measure for complex networks. Enys Mones, Lilla Vicsek, Tamás Vicsek. PLoS One, 2012 Apr 04; 7(3). PMID: 22470477 Free PMC article.
"Guilt by association" is the exception rather than the rule in gene networks. Jesse Gillis, Paul Pavlidis. PLoS Comput Biol, 2012 Apr 06; 8(3). PMID: 22479173 Free PMC article. Highly Cited.
Fragmentation: loss of global coherence or breakdown of modularity in functional brain architecture? Daan van den Berg, Pulin Gong, Michael Breakspear, Cees van Leeuwen. Front Syst Neurosci, 2012 Apr 06; 6. PMID: 22479239 Free PMC article.
The major transitions of life from a network perspective. Béla Suki. Front Physiol, 2012 Apr 20; 3. PMID: 22514542 Free PMC article.
Composition and structure of a large online social network in The Netherlands. Rense Corten. PLoS One, 2012 Apr 24; 7(4). PMID: 22523557 Free PMC article.
Competing activation mechanisms in epidemics on networks. Claudio Castellano, Romualdo Pastor-Satorras. Sci Rep, 2012 Apr 24; 2. PMID: 22523634 Free PMC article.
Limitations of gene duplication models: evolution of modules in protein interaction networks. Frank Emmert-Streib. PLoS One, 2012 Apr 25; 7(4). PMID: 22530042 Free PMC article.
Functional organization and its implication in evolution of the human protein-protein interaction network. Yiqiang Zhao, Sean D Mooney. BMC Genomics, 2012 Apr 26; 13. PMID: 22530615 Free PMC article.
Social Network Visualization in Epidemiology. Nicholas A Christakis, James H Fowler. Nor Epidemiol, 2009 Jan 01; 19(1). PMID: 22544996 Free PMC article.
Gene regulation is governed by a core network in hepatocellular carcinoma. Zuguang Gu, Chenyu Zhang, Jin Wang. BMC Syst Biol, 2012 May 03; 6. PMID: 22548756 Free PMC article.
Revisiting the variation of clustering coefficient of biological networks suggests new modular structure. Dapeng Hao, Cong Ren, Chuanxing Li. BMC Syst Biol, 2012 May 03; 6. PMID: 22548803 Free PMC article.
Graph spectral analysis of protein interaction network evolution. Thomas Thorne, Michael P H Stumpf. J R Soc Interface, 2012 May 04; 9(75). PMID: 22552917 Free PMC article.
EEG-based functional brain networks: does the network size matter? Amir Joudaki, Niloufar Salehi, Mahdi Jalili, Maria G Knyazeva. PLoS One, 2012 May 05; 7(4). PMID: 22558196 Free PMC article.
Targeting the dynamics of complex networks. Ricardo Gutiérrez, Irene Sendiña-Nadal, +2 authors, Massimiliano Zanin, David Papo, Stefano Boccaletti. less Sci Rep, 2012 May 09; 2. PMID: 22563525 Free PMC article.
Genome-scale analysis of interaction dynamics reveals organization of biological networks. Jishnu Das, Jaaved Mohammed, Haiyuan Yu. Bioinformatics, 2012 May 12; 28(14). PMID: 22576179 Free PMC article.
Microbial ecology of expanding oxygen minimum zones. Jody J Wright, Kishori M Konwar, Steven J Hallam. Nat Rev Microbiol, 2012 May 15; 10(6). PMID: 22580367 Highly Cited. Review.
Recurrent coupling improves discrimination of temporal spike patterns. Chun-Wei Yuan, Christian Leibold. Front Comput Neurosci, 2012 May 16; 6. PMID: 22586392 Free PMC article.
Exploring statistical and population aspects of network complexity. Frank Emmert-Streib, Matthias Dehmer. PLoS One, 2012 May 17; 7(5). PMID: 22590495 Free PMC article.
Biological robustness: paradigms, mechanisms, and systems principles. James Michael Whitacre. Front Genet, 2012 May 18; 3. PMID: 22593762 Free PMC article.
NetMets: software for quantifying and visualizing errors in biological network segmentation. David Mayerich, Chris Bjornsson, Jonathan Taylor, Badrinath Roysam. BMC Bioinformatics, 2012 May 25; 13 Suppl 8. PMID: 22607549 Free PMC article.
High-throughput analysis of peptide-binding modules. Bernard A Liu, Brett W Engelmann, Piers D Nash. Proteomics, 2012 May 23; 12(10). PMID: 22610655 Free PMC article. Review.
Computational modeling of epilepsy for an experimental neurologist. Abbey B Holt, Theoden I Netoff. Exp Neurol, 2012 May 24; 244. PMID: 22617489 Free PMC article. Review.
Assessment method for a power analysis to identify differentially expressed pathways. Shailesh Tripathi, Frank Emmert-Streib. PLoS One, 2012 May 26; 7(5). PMID: 22629411 Free PMC article.
Robust classification of salient links in complex networks. Daniel Grady, Christian Thiemann, Dirk Brockmann. Nat Commun, 2012 May 31; 3. PMID: 22643891
Duplicate gene enrichment and expression pattern diversification in multicellularity. Timothy Padawer, Ralph E Leighty, Degeng Wang. Nucleic Acids Res, 2012 May 31; 40(16). PMID: 22645319 Free PMC article.
Top performers are not the most impressive when extreme performance indicates unreliability. Jerker Denrell, Chengwei Liu. Proc Natl Acad Sci U S A, 2012 May 31; 109(24). PMID: 22645350 Free PMC article.
Molecular ecological network analyses. Ye Deng, Yi-Huei Jiang, +3 authors, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou. less BMC Bioinformatics, 2012 Jun 01; 13. PMID: 22646978 Free PMC article. Highly Cited.
Agent-based and phylogenetic analyses reveal how HIV-1 moves between risk groups: injecting drug users sustain the heterosexual epidemic in Latvia. Frederik Graw, Thomas Leitner, Ruy M Ribeiro. Epidemics, 2012 Jun 06; 4(2). PMID: 22664069 Free PMC article.
Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes. Zuguang Gu, Jialin Liu, +2 authors, Kunming Cao, Junfeng Zhang, Jin Wang. less BMC Syst Biol, 2012 Jun 08; 6. PMID: 22672776 Free PMC article.
Study on TCM Syndrome Identification Modes of Coronary Heart Disease Based on Data Mining. Qi Shi, Huihui Zhao, +4 authors, Wei Wang. less Evid Based Complement Alternat Med, 2012 Jun 08; 2012. PMID: 22675388 Free PMC article.
Google in a quantum network. G D Paparo, M A Martin-Delgado. Sci Rep, 2012 Jun 12; 2. PMID: 22685626 Free PMC article.
Hierarchical ordering of reticular networks. Yuriy Mileyko, Herbert Edelsbrunner, Charles A Price, Joshua S Weitz. PLoS One, 2012 Jun 16; 7(6). PMID: 22701559 Free PMC article.
Inferring general relations between network characteristics from specific network ensembles. Stefano Cardanobile, Volker Pernice, Moritz Deger, Stefan Rotter. PLoS One, 2012 Jun 16; 7(6). PMID: 22701586 Free PMC article.
Social encounter networks: collective properties and disease transmission. Leon Danon, Thomas A House, Jonathan M Read, Matt J Keeling. J R Soc Interface, 2012 Jun 22; 9(76). PMID: 22718990 Free PMC article.
Network compression as a quality measure for protein interaction networks. Loic Royer, Matthias Reimann, A Francis Stewart, Michael Schroeder. PLoS One, 2012 Jun 22; 7(6). PMID: 22719828 Free PMC article.
Characterizing interdisciplinarity of researchers and research topics using web search engines. Hiroki Sayama, Jin Akaishi. PLoS One, 2012 Jun 22; 7(6). PMID: 22719935 Free PMC article.
Gene network effects on brain microstructure and intellectual performance identified in 472 twins. Ming-Chang Chiang, Marina Barysheva, +8 authors, Paul M Thompson. less J Neurosci, 2012 Jun 23; 32(25). PMID: 22723713 Free PMC article.
Reorganization of Brain Networks in Aging and Age-related Diseases. Junfeng Sun, Shanbao Tong, Guo-Yuan Yang. Aging Dis, 2012 Jun 23; 3(2). PMID: 22724079 Free PMC article.
A new measure based on degree distribution that links information theory and network graph analysis. Michael W Hadley, Matt F McGranaghan, +2 authors, Aaron Willey, Chun Wai Liew, Elaine R Reynolds. less Neural Syst Circuits, 2012 Jun 26; 2(1). PMID: 22726594 Free PMC article.
Optimizing surveillance for livestock disease spreading through animal movements. Paolo Bajardi, Alain Barrat, Lara Savini, Vittoria Colizza. J R Soc Interface, 2012 Jun 26; 9(76). PMID: 22728387 Free PMC article.
Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age. Like Fokkens, Paulien Hogeweg, Berend Snel. BMC Evol Biol, 2012 Jun 27; 12. PMID: 22732003 Free PMC article.
Activity driven modeling of time varying networks. N Perra, B Gonçalves, R Pastor-Satorras, A Vespignani. Sci Rep, 2012 Jun 29; 2. PMID: 22741058 Free PMC article.
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers. Christopher L Plaisier, Min Pan, Nitin S Baliga. Genome Res, 2012 Jun 30; 22(11). PMID: 22745231 Free PMC article.
The maximum clique enumeration problem: algorithms, applications, and implementations. John D Eblen, Charles A Phillips, Gary L Rogers, Michael A Langston. BMC Bioinformatics, 2012 Jul 13; 13 Suppl 10. PMID: 22759429 Free PMC article.
Complex transition to cooperative behavior in a structured population model. Luciano Miranda, Adauto J F de Souza, Fernando F Ferreira, Paulo R A Campos. PLoS One, 2012 Jul 05; 7(6). PMID: 22761736 Free PMC article.
The ERBB network: at last, cancer therapy meets systems biology. Yosef Yarden, Gur Pines. Nat Rev Cancer, 2012 Jul 13; 12(8). PMID: 22785351 Highly Cited. Review.
Microbial interactions: from networks to models. Karoline Faust, Jeroen Raes. Nat Rev Microbiol, 2012 Jul 17; 10(8). PMID: 22796884 Highly Cited. Review.
Microbial co-occurrence relationships in the human microbiome. Karoline Faust, J Fah Sathirapongsasuti, +4 authors, Curtis Huttenhower. less PLoS Comput Biol, 2012 Jul 19; 8(7). PMID: 22807668 Free PMC article. Highly Cited.
Robustness elasticity in complex networks. Timothy C Matisziw, Tony H Grubesic, Junyu Guo. PLoS One, 2012 Jul 19; 7(7). PMID: 22808060 Free PMC article.
Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis. Rohit Vashisht, Anupam Kumar Mondal, +51 authors, Anshu Bhardwaj. less PLoS One, 2012 Jul 19; 7(7). PMID: 22808064 Free PMC article.
Process-driven inference of biological network structure: feasibility, minimality, and multiplicity. Guanyu Wang, Yongwu Rong, +4 authors, Chen Zeng. less PLoS One, 2012 Jul 21; 7(7). PMID: 22815739 Free PMC article.
Information processing in social insect networks. James S Waters, Jennifer H Fewell. PLoS One, 2012 Jul 21; 7(7). PMID: 22815740 Free PMC article.
Network analysis of rat spatial cognition: behaviorally-established symmetry in a physically asymmetrical environment. Shahaf Weiss, Osnat Yaski, +2 authors, David Eilam, Juval Portugali, Efrat Blumenfeld-Lieberthal. less PLoS One, 2012 Jul 21; 7(7). PMID: 22815808 Free PMC article.
A strategy based on protein-protein interface motifs may help in identifying drug off-targets. H Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gursoy. J Chem Inf Model, 2012 Jul 24; 52(8). PMID: 22817115 Free PMC article.
Target Detection via Network Filtering. Shu Yang, Eric D Kolaczyk. IEEE Trans Inf Theory, 2010 May 01; 56(5). PMID: 22822264 Free PMC article.
A metric of influential spreading during contagion dynamics through the air transportation network. Christos Nicolaides, Luis Cueto-Felgueroso, Marta C González, Ruben Juanes. PLoS One, 2012 Jul 26; 7(7). PMID: 22829902 Free PMC article.
Evolution of the most common English words and phrases over the centuries. Matjaz Perc. J R Soc Interface, 2012 Jul 27; 9(77). PMID: 22832364 Free PMC article.
What determines the temporal changes of species degree and strength in an oceanic island plant-disperser network? Aarón González-Castro, Suann Yang, Manuel Nogales, Tomás A Carlo. PLoS One, 2012 Jul 31; 7(7). PMID: 22844470 Free PMC article.
Scale-free behaviour of amino acid pair interactions in folded proteins. Steffen B Petersen, Maria Teresa Neves-Petersen, +2 authors, Henrik M Geertz-Hansen. less PLoS One, 2012 Aug 01; 7(7). PMID: 22848462 Free PMC article.
Discovering communities through friendship. Greg Morrison, L Mahadevan. PLoS One, 2012 Aug 04; 7(7). PMID: 22859934 Free PMC article.
The Cell Collective: toward an open and collaborative approach to systems biology. Tomáš Helikar, Bryan Kowal, +7 authors, Jim A Rogers. less BMC Syst Biol, 2012 Aug 09; 6. PMID: 22871178 Free PMC article.
The development of hub architecture in the human functional brain network. Kai Hwang, Michael N Hallquist, Beatriz Luna. Cereb Cortex, 2012 Aug 10; 23(10). PMID: 22875861 Free PMC article. Highly Cited.
SpecNet: a spatial network algorithm that generates a wide range of specific structures. Jenny Lennartsson, Nina Håkansson, Uno Wennergren, Annie Jonsson. PLoS One, 2012 Aug 10; 7(8). PMID: 22876329 Free PMC article.
Building blocks of self-sustained activity in a simple deterministic model of excitable neural networks. Guadalupe C Garcia, Annick Lesne, Marc-Thorsten Hütt, Claus C Hilgetag. Front Comput Neurosci, 2012 Aug 14; 6. PMID: 22888317 Free PMC article.
Systems proteomics for translational network medicine. D Kent Arrell, Andre Terzic. Circ Cardiovasc Genet, 2012 Aug 17; 5(4). PMID: 22896016 Free PMC article.
A network synthesis model for generating protein interaction network families. Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon. PLoS One, 2012 Aug 23; 7(8). PMID: 22912671 Free PMC article.
Critical paths in a metapopulation model of H1N1: Efficiently delaying influenza spreading through flight cancellation. Jose Marcelino, Marcus Kaiser. PLoS Curr, 2012 Aug 25; 4. PMID: 22919563 Free PMC article.
Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. Olav Stetter, Demian Battaglia, Jordi Soriano, Theo Geisel. PLoS Comput Biol, 2012 Aug 29; 8(8). PMID: 22927808 Free PMC article.
Human matching behavior in social networks: an algorithmic perspective. Lorenzo Coviello, Massimo Franceschetti, +2 authors, Mathew D McCubbins, Ramamohan Paturi, Andrea Vattani. less PLoS One, 2012 Aug 29; 7(8). PMID: 22927918 Free PMC article.
Understanding Dupuytren's Disease Using Systems Biology: A Move Away from Reductionism. Samrina Rehman, Philip J R Day, Ardeshir Bayat, Hans V Westerhoff. Front Physiol, 2012 Aug 31; 3. PMID: 22934066 Free PMC article.
Size matters: concurrency and the epidemic potential of HIV in small networks. Nicole Bohme Carnegie, Martina Morris. PLoS One, 2012 Sep 01; 7(8). PMID: 22937011 Free PMC article.
Local-based semantic navigation on a networked representation of information. José A Capitán, Javier Borge-Holthoefer, +4 authors, Alex Arenas. less PLoS One, 2012 Sep 01; 7(8). PMID: 22937081 Free PMC article.
Criticality is an emergent property of genetic networks that exhibit evolvability. Christian Torres-Sosa, Sui Huang, Maximino Aldana. PLoS Comput Biol, 2012 Sep 13; 8(9). PMID: 22969419 Free PMC article.
Bipartite graphs as models of population structures in evolutionary multiplayer games. Jorge Peña, Yannick Rochat. PLoS One, 2012 Sep 13; 7(9). PMID: 22970237 Free PMC article.
Network science: Luck or reason. Albert-László Barabási. Nature, 2012 Sep 14; 489(7417). PMID: 22972190
Popularity versus similarity in growing networks. Fragkiskos Papadopoulos, Maksim Kitsak, +2 authors, M Ángeles Serrano, Marián Boguñá, Dmitri Krioukov. less Nature, 2012 Sep 14; 489(7417). PMID: 22972194
Cycle-by-cycle assembly of respiratory network activity is dynamic and stochastic. Michael S Carroll, Jan-Marino Ramirez. J Neurophysiol, 2012 Sep 21; 109(2). PMID: 22993257 Free PMC article.
Phylodynamic analysis of a viral infection network. Teiichiro Shiino. Front Microbiol, 2012 Sep 21; 3. PMID: 22993510 Free PMC article.
A weighted and directed interareal connectivity matrix for macaque cerebral cortex. N T Markov, M M Ercsey-Ravasz, +19 authors, H Kennedy. less Cereb Cortex, 2012 Sep 27; 24(1). PMID: 23010748 Free PMC article. Highly Cited.
The Effect of Random Edge Removal on Network Degree Sequence. Thomas Dubois, Stephen Eubank, Aravind Srinivasan. Electron J Comb, 2012 Oct 02; 19(1). PMID: 23024579 Free PMC article.
Control centrality and hierarchical structure in complex networks. Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási. PLoS One, 2012 Oct 03; 7(9). PMID: 23028542 Free PMC article.
Topological and functional properties of the small GTPases protein interaction network. Anna Delprato. PLoS One, 2012 Oct 03; 7(9). PMID: 23028658 Free PMC article.
Therapeutic effects of astragaloside IV on myocardial injuries: multi-target identification and network analysis. Jing Zhao, Pengyuan Yang, +5 authors, Weidong Zhang. less PLoS One, 2012 Oct 03; 7(9). PMID: 23028693 Free PMC article.
Information flow in networks and the law of diminishing marginal returns: evidence from modeling and human electroencephalographic recordings. Daniele Marinazzo, Guorong Wu, +2 authors, Mario Pellicoro, Leonardo Angelini, Sebastiano Stramaglia. less PLoS One, 2012 Oct 03; 7(9). PMID: 23028745 Free PMC article.
Taxonomies of networks from community structure. Jukka-Pekka Onnela, Daniel J Fenn, +4 authors, Nick S Jones. less Phys Rev E Stat Nonlin Soft Matter Phys, 2012 Oct 04; 86(3 Pt 2). PMID: 23030977 Free PMC article.
Inferring domain-domain interactions from protein-protein interactions in the complex network conformation. Chen Chen, Jun-Fei Zhao, +2 authors, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang. less BMC Syst Biol, 2012 Oct 12; 6 Suppl 1. PMID: 23046795 Free PMC article.
Joint estimation of multiple graphical models. Jian Guo, Elizaveta Levina, George Michailidis, Ji Zhu. Biometrika, 2011 Mar 01; 98(1). PMID: 23049124 Free PMC article.
The scale-free network behavior of ambient volatile organic compounds. Chen-Wei Liang, Chien-Kuo Ku, Jeng-Jong Liang. Environ Sci Pollut Res Int, 2012 Oct 12; 20(2). PMID: 23054767
Motif Participation by Genes in E. coli Transcriptional Networks. Michael Mayo, Ahmed F Abdelzaher, Edward J Perkins, Preetam Ghosh. Front Physiol, 2012 Oct 12; 3. PMID: 23055976 Free PMC article.
Nucleotide-resolution profiling of RNA recombination in the encapsidated genome of a eukaryotic RNA virus by next-generation sequencing. Andrew Routh, Phillip Ordoukhanian, John E Johnson. J Mol Biol, 2012 Oct 17; 424(5). PMID: 23069247 Free PMC article.
Beyond pairwise strategy updating in the prisoner's dilemma game. Xiaofeng Wang, Matjaž Perc, +2 authors, Yongkui Liu, Xiaojie Chen, Long Wang. less Sci Rep, 2012 Oct 18; 2. PMID: 23074647 Free PMC article.
Communication and wiring in the cortical connectome. Julian M L Budd, Zoltán F Kisvárday. Front Neuroanat, 2012 Oct 23; 6. PMID: 23087619 Free PMC article.
Brain connectivity analysis: a short survey. E W Lang, A M Tomé, +2 authors, I R Keck, J M Górriz-Sáez, C G Puntonet. less Comput Intell Neurosci, 2012 Oct 26; 2012. PMID: 23097663 Free PMC article. Review.
Combing the hairball with BioFabric: a new approach for visualization of large networks. William J R Longabaugh. BMC Bioinformatics, 2012 Oct 30; 13. PMID: 23102059 Free PMC article.
Large-scale functional organization of long-range chromatin interaction networks. Kuljeet Singh Sandhu, Guoliang Li, +14 authors, Yijun Ruan. less Cell Rep, 2012 Oct 30; 2(5). PMID: 23103170 Free PMC article.
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. George W Bassel, Allison Gaudinier, +3 authors, Ive De Smet. less Plant Cell, 2012 Nov 01; 24(10). PMID: 23110892 Free PMC article. Review.
Global civil unrest: contagion, self-organization, and prediction. Dan Braha. PLoS One, 2012 Nov 03; 7(10). PMID: 23119067 Free PMC article.
Random phenotypic variation of yeast (Saccharomyces cerevisiae) single-gene knockouts fits a double pareto-lognormal distribution. John H Graham, Daniel T Robb, Amy R Poe. PLoS One, 2012 Nov 10; 7(11). PMID: 23139826 Free PMC article.
There is more than a power law in Zipf. Matthieu Cristelli, Michael Batty, Luciano Pietronero. Sci Rep, 2012 Nov 10; 2. PMID: 23139862 Free PMC article.
Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation. Anupam Saxena, Hod Lipson, Francisco J Valero-Cuevas. PLoS Comput Biol, 2012 Nov 13; 8(11). PMID: 23144601 Free PMC article.
Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. Benjamin L King, Allan Peter Davis, +2 authors, Carolyn J Mattingly. less PLoS One, 2012 Nov 13; 7(11). PMID: 23144783 Free PMC article.
Influence of opinion dynamics on the evolution of games. Floriana Gargiulo, José J Ramasco. PLoS One, 2012 Nov 21; 7(11). PMID: 23166600 Free PMC article.
The problem of colliding networks and its relation to cell fusion and cancer. Alexei A Koulakov, Yuri Lazebnik. Biophys J, 2012 Dec 04; 103(9). PMID: 23199929 Free PMC article.
Empirical analysis and modeling of users' topic interests in online forums. Fei Xiong, Yun Liu. PLoS One, 2012 Dec 20; 7(12). PMID: 23251401 Free PMC article.
Computational prediction of protein-protein interactions in Leishmania predicted proteomes. Antonio M Rezende, Edson L Folador, Daniela de M Resende, Jeronimo C Ruiz. PLoS One, 2012 Dec 20; 7(12). PMID: 23251492 Free PMC article.
Intrinsically disordered proteins and conformational noise: implications in cancer. Gita Mahmoudabadi, Krithika Rajagopalan, +3 authors, Prakash Kulkarni. less Cell Cycle, 2012 Dec 21; 12(1). PMID: 23255110 Free PMC article.
Emergence of scale-free close-knit friendship structure in online social networks. Ai-Xiang Cui, Zi-Ke Zhang, +2 authors, Ming Tang, Pak Ming Hui, Yan Fu. less PLoS One, 2012 Dec 29; 7(12). PMID: 23272067 Free PMC article.
Using topology to tame the complex biochemistry of genetic networks. Mukund Thattai. Philos Trans A Math Phys Eng Sci, 2013 Jan 02; 371(1984). PMID: 23277605 Free PMC article.
Discriminating different classes of biological networks by analyzing the graphs spectra distribution. Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita. PLoS One, 2013 Jan 04; 7(12). PMID: 23284629 Free PMC article.
Power-laws and the use of pluripotent stem cell lines. Bernhard M Schuldt, Anke Guhr, +5 authors, Franz-Josef Müller. less PLoS One, 2013 Jan 10; 8(1). PMID: 23300961 Free PMC article.
Effect of correlations on network controllability. Márton Pósfai, Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási. Sci Rep, 2013 Jan 17; 3. PMID: 23323210 Free PMC article.
Social dynamics of science. Xiaoling Sun, Jasleen Kaur, +2 authors, Filippo Menczer. less Sci Rep, 2013 Jan 17; 3. PMID: 23323212 Free PMC article.
Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis. Ming Zhao, Xiang-dong Liu, +5 authors, Shu-hong Zhao. less BMC Genomics, 2013 Jan 24; 14. PMID: 23339624 Free PMC article.
Reward from punishment does not emerge at all costs. Jeromos Vukov, Flávio L Pinheiro, Francisco C Santos, Jorge M Pacheco. PLoS Comput Biol, 2013 Jan 24; 9(1). PMID: 23341764 Free PMC article.
Observability of complex systems. Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási. Proc Natl Acad Sci U S A, 2013 Jan 30; 110(7). PMID: 23359701 Free PMC article.
Global spatio-temporal patterns in human migration: a complex network perspective. Kyle F Davis, Paolo D'Odorico, Francesco Laio, Luca Ridolfi. PLoS One, 2013 Feb 02; 8(1). PMID: 23372664 Free PMC article.
Statistical assessment of crosstalk enrichment between gene groups in biological networks. Theodore McCormack, Oliver Frings, Andrey Alexeyenko, Erik L L Sonnhammer. PLoS One, 2013 Feb 02; 8(1). PMID: 23372799 Free PMC article.
Deviation of Zipf's and Heaps' Laws in human languages with limited dictionary sizes. Linyuan Lü, Zi-Ke Zhang, Tao Zhou. Sci Rep, 2013 Feb 05; 3. PMID: 23378896 Free PMC article.
Fashion, cooperation, and social interactions. Zhigang Cao, Haoyu Gao, +2 authors, Xinglong Qu, Mingmin Yang, Xiaoguang Yang. less PLoS One, 2013 Feb 06; 8(1). PMID: 23382799 Free PMC article.
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. Peter Csermely, Tamás Korcsmáros, +2 authors, Huba J M Kiss, Gábor London, Ruth Nussinov. less Pharmacol Ther, 2013 Feb 07; 138(3). PMID: 23384594 Free PMC article. Highly Cited. Review.
Cascading failures in bi-partite graphs: model for systemic risk propagation. Xuqing Huang, Irena Vodenska, Shlomo Havlin, H Eugene Stanley. Sci Rep, 2013 Feb 07; 3. PMID: 23386974 Free PMC article.
Renormalization and small-world model of fractal quantum repeater networks. Zong-Wen Wei, Bing-Hong Wang, Xiao-Pu Han. Sci Rep, 2013 Feb 07; 3. PMID: 23386977 Free PMC article.
Spreading dynamics on spatially constrained complex brain networks. Reuben O'Dea, Jonathan J Crofts, Marcus Kaiser. J R Soc Interface, 2013 Feb 15; 10(81). PMID: 23407574 Free PMC article.
The timing and targeting of treatment in influenza pandemics influences the emergence of resistance in structured populations. Benjamin M Althouse, Oscar Patterson-Lomba, Georg M Goerg, Laurent Hébert-Dufresne. PLoS Comput Biol, 2013 Feb 15; 9(2). PMID: 23408880 Free PMC article.
Modeling social network topologies in elementary schools. Rodrigo Huerta-Quintanilla, Efrain Canto-Lugo, Dolores Viga-de Alva. PLoS One, 2013 Feb 15; 8(2). PMID: 23408976 Free PMC article.
Potential theory for directed networks. Qian-Ming Zhang, Linyuan Lü, +3 authors, Wen-Qiang Wang, Yu-Xiao Zhu, Yu-Xiao, Tao Zhou. less PLoS One, 2013 Feb 15; 8(2). PMID: 23408979 Free PMC article.
Complexity of low-frequency blood oxygen level-dependent fluctuations covaries with local connectivity. Jeffrey S Anderson, Brandon A Zielinski, Jared A Nielsen, Michael A Ferguson. Hum Brain Mapp, 2013 Feb 19; 35(4). PMID: 23417795 Free PMC article.
On the dynamical properties of a model of cell differentiation. Marco Villani, Roberto Serra. EURASIP J Bioinform Syst Biol, 2013 Feb 21; 2013(1). PMID: 23421492 Free PMC article.
Computing the size and number of neuronal clusters in local circuits. Rodrigo Perin, Martin Telefont, Henry Markram. Front Neuroanat, 2013 Feb 21; 7. PMID: 23423949 Free PMC article.
Multi-scale clustering by building a robust and self correcting ultrametric topology on data points. Hsieh Fushing, Hui Wang, +2 authors, Kimberly Vanderwaal, Brenda McCowan, Patrice Koehl. less PLoS One, 2013 Feb 21; 8(2). PMID: 23424653 Free PMC article.
Structural properties and complexity of a new network class: Collatz step graphs. Frank Emmert-Streib. PLoS One, 2013 Feb 23; 8(2). PMID: 23431377 Free PMC article.
Studying the evolutionary relationships and phylogenetic trees of 21 groups of tRNA sequences based on complex networks. Fangping Wei, Bowen Chen. J Biol Phys, 2013 Mar 02; 38(2). PMID: 23450215 Free PMC article.
Cardiovascular outcomes and the physical and chemical properties of metal ions found in particulate matter air pollution: a QICAR study. Qingyu Meng, Jennifer Richmond-Bryant, +8 authors, Aijun Xiu. less Environ Health Perspect, 2013 Mar 07; 121(5). PMID: 23462649 Free PMC article.
Functional connectivity in islets of Langerhans from mouse pancreas tissue slices. Andraž Stožer, Marko Gosak, +4 authors, Dean Korošak. less PLoS Comput Biol, 2013 Mar 08; 9(2). PMID: 23468610 Free PMC article.
Preferential duplication of intermodular hub genes: an evolutionary signature in eukaryotes genome networks. Ricardo M Ferreira, José Luiz Rybarczyk-Filho, +4 authors, Rita M C de Almeida. less PLoS One, 2013 Mar 08; 8(2). PMID: 23468868 Free PMC article.
A kinetic model of the evolution of a protein interaction network. Piotr H Pawlowski, Szymon Kaczanowski, Piotr Zielenkiewicz. BMC Genomics, 2013 Mar 19; 14. PMID: 23497092 Free PMC article.
Cluster and propensity based approximation of a network. John Michael Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath. BMC Syst Biol, 2013 Mar 19; 7. PMID: 23497424 Free PMC article.
In vitro large-scale experimental and theoretical studies for the realization of bi-directional brain-prostheses. Paolo Bonifazi, Francesco Difato, +12 authors, Michela Chiappalone. less Front Neural Circuits, 2013 Mar 19; 7. PMID: 23503997 Free PMC article.
Exploring the morphospace of communication efficiency in complex networks. Joaquín Goñi, Andrea Avena-Koenigsberger, +3 authors, Olaf Sporns. less PLoS One, 2013 Mar 19; 8(3). PMID: 23505455 Free PMC article.
A progressive rupture model of soft tissue stress relaxation. Jason H T Bates, Baoshun Ma. Ann Biomed Eng, 2013 Mar 20; 41(6). PMID: 23508634 Free PMC article.
Balance between noise and information flow maximizes set complexity of network dynamics. Tuomo Mäki-Marttunen, Juha Kesseli, Matti Nykter. PLoS One, 2013 Mar 22; 8(3). PMID: 23516395 Free PMC article.
Schizophrenia at a genetics crossroads: where to now? Aiden Corvin. Schizophr Bull, 2013 Mar 23; 39(3). PMID: 23519022 Free PMC article.
The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks. Yuliang Jin, Dmitrij Turaev, +2 authors, Thomas Weinmaier, Thomas Rattei, Hernán A Makse. less PLoS One, 2013 Mar 26; 8(3). PMID: 23526967 Free PMC article.
Adaptive role switching promotes fairness in networked ultimatum game. Te Wu, Feng Fu, Yanling Zhang, Long Wang. Sci Rep, 2013 Mar 27; 3. PMID: 23528986 Free PMC article.
Single-subject grey matter graphs in Alzheimer's disease. Betty M Tijms, Christiane Möller, +6 authors, Frederik Barkhof. less PLoS One, 2013 Mar 29; 8(3). PMID: 23536835 Free PMC article.
Universities scale like cities. Anthony F J van Raan. PLoS One, 2013 Apr 02; 8(3). PMID: 23544062 Free PMC article.
A decade and a half of protein intrinsic disorder: biology still waits for physics. Vladimir N Uversky. Protein Sci, 2013 Apr 05; 22(6). PMID: 23553817 Free PMC article. Highly Cited. Review.
Optimizing treatment regimes to hinder antiviral resistance in influenza across time scales. Oscar Patterson-Lomba, Benjamin M Althouse, Georg M Goerg, Laurent Hébert-Dufresne. PLoS One, 2013 Apr 05; 8(3). PMID: 23555694 Free PMC article.
t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks. Lin Zhu, Zhu-Hong You, De-Shuang Huang, Bing Wang. PLoS One, 2013 Apr 06; 8(4). PMID: 23560036 Free PMC article.
From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks. Carlo Vittorio Cannistraci, Gregorio Alanis-Lobato, Timothy Ravasi. Sci Rep, 2013 Apr 09; 3. PMID: 23563395 Free PMC article.
Network class superposition analyses. Carl A B Pearson, Chen Zeng, Rahul Simha. PLoS One, 2013 Apr 09; 8(4). PMID: 23565141 Free PMC article.
Attack robustness and centrality of complex networks. Swami Iyer, Timothy Killingback, Bala Sundaram, Zhen Wang. PLoS One, 2013 Apr 09; 8(4). PMID: 23565156 Free PMC article.
Characterizing scientific production and consumption in physics. Qian Zhang, Nicola Perra, +2 authors, Bruno Gonçalves, Fabio Ciulla, Alessandro Vespignani. less Sci Rep, 2013 Apr 11; 3. PMID: 23571320 Free PMC article.
Neural progenitors organize in small-world networks to promote cell proliferation. Seth Malmersjö, Paola Rebellato, +12 authors, Per Uhlén. less Proc Natl Acad Sci U S A, 2013 Apr 12; 110(16). PMID: 23576737 Free PMC article.
Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints. Vincent Guillemot, Andreas Bender, Anne-Laure Boulesteix. PLoS One, 2013 Apr 18; 8(4). PMID: 23593235 Free PMC article.
Features of the correlation structure of price indices. Xiangyun Gao, Haizhong An, Weiqiong Zhong. PLoS One, 2013 Apr 18; 8(4). PMID: 23593399 Free PMC article.
Phase transition in the economically modeled growth of a cellular nervous system. Vincenzo Nicosia, Petra E Vértes, +2 authors, William R Schafer, Vito Latora, Edward T Bullmore. less Proc Natl Acad Sci U S A, 2013 Apr 24; 110(19). PMID: 23610428 Free PMC article.
When is hub gene selection better than standard meta-analysis? Peter Langfelder, Paul S Mischel, Steve Horvath. PLoS One, 2013 Apr 25; 8(4). PMID: 23613865 Free PMC article. Highly Cited.
Local functional connectivity as a pre-surgical tool for seizure focus identification in non-lesion, focal epilepsy. K E Weaver, W A Chaovalitwongse, +3 authors, J G Ojemann. less Front Neurol, 2013 May 04; 4. PMID: 23641233 Free PMC article.
Origins of power-law degree distribution in the heterogeneity of human activity in social networks. Lev Muchnik, Sen Pei, +4 authors, Hernán A Makse. less Sci Rep, 2013 May 08; 3. PMID: 23648793 Free PMC article.
True scale-invariant random spatial networks. David Aldous, Karthik Ganesan. Proc Natl Acad Sci U S A, 2013 May 08; 110(22). PMID: 23650348 Free PMC article.
Discussing Occupy Wall Street on Twitter: longitudinal network analysis of equality, emotion, and stability of public discussion. Cheng-Jun Wang, Pian-Pian Wang, Jonathan J H Zhu. Cyberpsychol Behav Soc Netw, 2013 May 10; 16(9). PMID: 23656222 Free PMC article.
Functional mapping of thalamic nuclei and their integration into cortico-striatal-thalamo-cortical loops via ultra-high resolution imaging-from animal anatomy to in vivo imaging in humans. Coraline D Metzger, Ysbrand D van der Werf, Martin Walter. Front Neurosci, 2013 May 10; 7. PMID: 23658535 Free PMC article.
Employment growth through labor flow networks. Omar A Guerrero, Robert L Axtell. PLoS One, 2013 May 10; 8(5). PMID: 23658682 Free PMC article.
Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Jishnu Das, Tommy V Vo, +13 authors, Haiyuan Yu. less Sci Signal, 2013 May 23; 6(276). PMID: 23695164 Free PMC article.
Are network-based interventions a useful antiobesity strategy? An application of simulation models for causal inference in epidemiology. Abdulrahman M El-Sayed, Lars Seemann, Peter Scarborough, Sandro Galea. Am J Epidemiol, 2013 May 23; 178(2). PMID: 23696107 Free PMC article.
Lognormal infection times of online information spread. Christian Doerr, Norbert Blenn, Piet Van Mieghem. PLoS One, 2013 May 24; 8(5). PMID: 23700473 Free PMC article.
An exploration of graph metric reproducibility in complex brain networks. Qawi K Telesford, Jonathan H Burdette, Paul J Laurienti. Front Neurosci, 2013 May 30; 7. PMID: 23717257 Free PMC article.
Network2Canvas: network visualization on a canvas with enrichment analysis. Christopher M Tan, Edward Y Chen, +2 authors, Ruth Dannenfelser, Neil R Clark, Avi Ma'ayan. less Bioinformatics, 2013 Jun 12; 29(15). PMID: 23749960 Free PMC article.
The relevance of network micro-structure for neural dynamics. Volker Pernice, Moritz Deger, Stefano Cardanobile, Stefan Rotter. Front Comput Neurosci, 2013 Jun 14; 7. PMID: 23761758 Free PMC article.
Topological Strata of Weighted Complex Networks. Giovanni Petri, Martina Scolamiero, Irene Donato, Francesco Vaccarino. PLoS One, 2013 Jun 28; 8(6). PMID: 23805226 Free PMC article.
Evolution of cooperation in a heterogeneous graph: fixation probabilities under weak selection. Cong Li, Boyu Zhang, Ross Cressman, Yi Tao. PLoS One, 2013 Jul 03; 8(6). PMID: 23818942 Free PMC article.
IMDB network revisited: unveiling fractal and modular properties from a typical small-world network. Lazaros K Gallos, Fabricio Q Potiguar, José S Andrade, Hernan A Makse. PLoS One, 2013 Jul 05; 8(6). PMID: 23826098 Free PMC article.
Metabolome and metaboproteome remodeling in nuclear reprogramming. Clifford Dl Folmes, D Kent Arrell, +4 authors, Andre Terzic. less Cell Cycle, 2013 Jul 11; 12(15). PMID: 23839047 Free PMC article.
Policy trap and optimal subsidization policy under limited supply of vaccines. Ming Yi, Achla Marathe. PLoS One, 2013 Jul 11; 8(7). PMID: 23840869 Free PMC article.
Global efficiency of local immunization on complex networks. Laurent Hébert-Dufresne, Antoine Allard, Jean-Gabriel Young, Louis J Dubé. Sci Rep, 2013 Jul 12; 3. PMID: 23842121 Free PMC article.
Malaria transmission modelling: a network perspective. Jiming Liu, Bo Yang, William K Cheung, Guojing Yang. Infect Dis Poverty, 2012 Jan 01; 1(1). PMID: 23849949 Free PMC article.
Network link prediction by global silencing of indirect correlations. Baruch Barzel, Albert-László Barabási. Nat Biotechnol, 2013 Jul 16; 31(8). PMID: 23851447 Free PMC article. Highly Cited.
Do scientists trace hot topics? Tian Wei, Menghui Li, +4 authors, Jinshan Wu. less Sci Rep, 2013 Jul 17; 3. PMID: 23856680 Free PMC article.
Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks. Lindsay Rutter, Sreenivasan R Nadar, +4 authors, Richard Coppola. less Front Comput Neurosci, 2013 Jul 23; 7. PMID: 23874288 Free PMC article.
Constitutively elevated salicylic acid levels alter photosynthesis and oxidative state but not growth in transgenic populus. Liang-Jiao Xue, Wenbing Guo, +8 authors, Chung-Jui Tsai. less Plant Cell, 2013 Aug 02; 25(7). PMID: 23903318 Free PMC article.
Mitigation of epidemics in contact networks through optimal contact adaptation. Mina Youssef, Caterina Scoglio. Math Biosci Eng, 2013 Aug 03; 10(4). PMID: 23906209 Free PMC article.
Control capacity and a random sampling method in exploring controllability of complex networks. Tao Jia, Albert-László Barabási. Sci Rep, 2013 Aug 06; 3. PMID: 23912679 Free PMC article.
Counting motifs in the human interactome. Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang. Nat Commun, 2013 Aug 07; 4. PMID: 23917172 Free PMC article.
Quantum transport enhancement by time-reversal symmetry breaking. Zoltán Zimborás, Mauro Faccin, +3 authors, Jacob Biamonte. less Sci Rep, 2013 Aug 07; 3. PMID: 23917452 Free PMC article.
Connectivity, not frequency, determines the fate of a morpheme. Daniela Barbara Keller, Jörg Schultz. PLoS One, 2013 Aug 08; 8(7). PMID: 23922865 Free PMC article.
A probabilistic model of neutral and selective dynamics of protein network evolution. Janusz Dutkowski, Jerzy Tiuryn. J Comput Biol, 2013 Aug 13; 20(9). PMID: 23931333 Free PMC article.
A contribution to the study of plant development evolution based on gene co-expression networks. Francisco J Romero-Campero, Eva Lucas-Reina, +2 authors, Fatima E Said, José M Romero, Federico Valverde. less Front Plant Sci, 2013 Aug 13; 4. PMID: 23935602 Free PMC article.
Structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework. Tuomo Mäki-Marttunen, Jugoslava Aćimović, Keijo Ruohonen, Marja-Leena Linne. PLoS One, 2013 Aug 13; 8(7). PMID: 23935998 Free PMC article.
Network effects of risk behavior change following prophylactic interventions. Rajmohan Rajaraman, Zhifeng Sun, Ravi Sundaram, Anil Kumar S Vullikanti. PLoS One, 2013 Aug 13; 8(8). PMID: 23936290 Free PMC article.
Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks. Adam Stevens, Daniel Hanson, +3 authors, Peter Clayton. less BMC Genomics, 2013 Aug 15; 14. PMID: 23941278 Free PMC article.
Spreading of cooperative behaviour across interdependent groups. Luo-Luo Jiang, Matjaž Perc. Sci Rep, 2013 Aug 22; 3. PMID: 23963495 Free PMC article.
Integration of steady-state and temporal gene expression data for the inference of gene regulatory networks. Yi Kan Wang, Daniel G Hurley, +2 authors, Santiago Schnell, Cristin G Print, Edmund J Crampin. less PLoS One, 2013 Aug 24; 8(8). PMID: 23967277 Free PMC article.
Evidence for hubs in human functional brain networks. Jonathan D Power, Bradley L Schlaggar, Christina N Lessov-Schlaggar, Steven E Petersen. Neuron, 2013 Aug 27; 79(4). PMID: 23972601 Free PMC article. Highly Cited.
Cluster-based statistics for brain connectivity in correlation with behavioral measures. Cheol E Han, Sang Wook Yoo, +2 authors, Sang Won Seo, Duk L Na, Joon-Kyung Seong. less PLoS One, 2013 Aug 27; 8(8). PMID: 23977281 Free PMC article.
A coevolving model based on preferential triadic closure for social media networks. Menghui Li, Hailin Zou, +4 authors, Choy-Heng Lai. less Sci Rep, 2013 Aug 28; 3. PMID: 23979061 Free PMC article.
Deciphering the global organization of clustering in real complex networks. Pol Colomer-de-Simón, M Ángeles Serrano, +2 authors, Marián Boguñá. less Sci Rep, 2013 Aug 29; 3. PMID: 23982757 Free PMC article.
Scaling of topologically similar functional modules defines mouse primary auditory and somatosensory microcircuitry. Alexander J Sadovsky, Jason N MacLean. J Neurosci, 2013 Aug 30; 33(35). PMID: 23986241 Free PMC article.
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). Evan O Paull, Daniel E Carlin, +3 authors, Joshua M Stuart. less Bioinformatics, 2013 Aug 30; 29(21). PMID: 23986566 Free PMC article.
Genomic characterization of remission in juvenile idiopathic arthritis. Kaiyu Jiang, Mark Frank, +2 authors, Yanmin Chen, Jeanette Osban, James N Jarvis. less Arthritis Res Ther, 2013 Sep 05; 15(4). PMID: 24000795 Free PMC article.
Exact controllability of complex networks. Zhengzhong Yuan, Chen Zhao, +2 authors, Zengru Di, Wen-Xu Wang, Ying-Cheng Lai. less Nat Commun, 2013 Sep 13; 4. PMID: 24025746 Free PMC article.
Structural and Functional Analysis of Giant Strong Component of Bacillus thuringiensis Metabolic Network. D W Ding, Y R Ding, +2 authors, L N Li, Y J Cai, W B Xu. less Braz J Microbiol, 2009 Apr 01; 40(2). PMID: 24031381 Free PMC article.
Correlations between community structure and link formation in complex networks. Zhen Liu, Jia-Lin He, Komal Kapoor, Jaideep Srivastava. PLoS One, 2013 Sep 17; 8(9). PMID: 24039818 Free PMC article.
Dissection of miRNA-miRNA interaction in esophageal squamous cell carcinoma. Bingli Wu, Chunquan Li, +10 authors, Xia Li. less PLoS One, 2013 Sep 17; 8(9). PMID: 24039884 Free PMC article.
Evaluating the feasibility and participants' representativeness of an online nationwide surveillance system for influenza in France. Marion Debin, Clément Turbelin, +6 authors, Vittoria Colizza. less PLoS One, 2013 Sep 17; 8(9). PMID: 24040020 Free PMC article.
Topology of molecular interaction networks. Wynand Winterbach, Piet Van Mieghem, +2 authors, Marcel Reinders, Huijuan Wang, Dick de Ridder. less BMC Syst Biol, 2013 Sep 18; 7. PMID: 24041013 Free PMC article. Review.
Hierarchical excitatory synaptic connectivity in mouse olfactory cortex. Matthew J McGinley, Gary L Westbrook. Proc Natl Acad Sci U S A, 2013 Sep 18; 110(40). PMID: 24043834 Free PMC article.
Diversity of individual mobility patterns and emergence of aggregated scaling laws. Xiao-Yong Yan, Xiao-Pu Han, Bing-Hong Wang, Tao Zhou. Sci Rep, 2013 Sep 21; 3. PMID: 24045416 Free PMC article.
An integrated quantitative proteomics and systems biology approach to explore synaptic protein profile changes during morphine exposure. Steven D Stockton, Lakshmi A Devi. Neuropsychopharmacology, 2013 Sep 21; 39(1). PMID: 24045585 Free PMC article. Review.
Integrative approaches for finding modular structure in biological networks. Koyel Mitra, Anne-Ruxandra Carvunis, Sanath Kumar Ramesh, Trey Ideker. Nat Rev Genet, 2013 Sep 21; 14(10). PMID: 24045689 Free PMC article. Highly Cited. Review.
The relationship between modularity and robustness in signalling networks. Tien-Dzung Tran, Yung-Keun Kwon. J R Soc Interface, 2013 Sep 21; 10(88). PMID: 24047877 Free PMC article.
MicroRNAs act complementarily to regulate disease-related mRNA modules in human diseases. Sreenivas Chavali, Sören Bruhn, +6 authors, Mikael Benson. less RNA, 2013 Sep 26; 19(11). PMID: 24062574 Free PMC article.
A latent parameter node-centric model for spatial networks. Nicholas D Larusso, Brian E Ruttenberg, Ambuj Singh. PLoS One, 2013 Oct 03; 8(9). PMID: 24086251 Free PMC article.
Quantum Google in a complex network. Giuseppe Davide Paparo, Markus Müller, Francesc Comellas, Miguel Angel Martin-Delgado. Sci Rep, 2013 Oct 05; 3. PMID: 24091980 Free PMC article.
A predictive network model of cerebral cortical connectivity based on a distance rule. Mária Ercsey-Ravasz, Nikola T Markov, +4 authors, Henry Kennedy. less Neuron, 2013 Oct 08; 80(1). PMID: 24094111 Free PMC article. Highly Cited.
Cumulative effect in information diffusion: empirical study on a microblogging network. Peng Bao, Hua-Wei Shen, Wei Chen, Xue-Qi Cheng. PLoS One, 2013 Oct 08; 8(10). PMID: 24098422 Free PMC article.
Awareness as observational heterarchy. Kohei Sonoda, Kentaro Kodama, Yukio-Pegio Gunji. Front Psychol, 2013 Oct 09; 4. PMID: 24101912 Free PMC article.
Uncovering the role of elementary processes in network evolution. Gourab Ghoshal, Liping Chi, Albert-László Barabási. Sci Rep, 2013 Oct 11; 3. PMID: 24108146 Free PMC article.
Effects of adaptive degrees of trust on coevolution of quantum strategies on scale-free networks. Qiang Li, Minyou Chen, +2 authors, Matjaž Perc, Azhar Iqbal, Derek Abbott. less Sci Rep, 2013 Oct 16; 3. PMID: 24126674 Free PMC article.
Gene expression profile analysis of human intervertebral disc degeneration. Kai Chen, Dajiang Wu, +6 authors, Ming Li. less Genet Mol Biol, 2013 Oct 17; 36(3). PMID: 24130454 Free PMC article.
Impact of social punishment on cooperative behavior in complex networks. Zhen Wang, Cheng-Yi Xia, +2 authors, Sandro Meloni, Chang-Song Zhou, Yamir Moreno. less Sci Rep, 2013 Oct 29; 3. PMID: 24162105 Free PMC article.
Stress-induced changes in gene interactions in human cells. Renuka R Nayak, William E Bernal, +2 authors, Jessica W Lee, Michael J Kearns, Vivian G Cheung. less Nucleic Acids Res, 2013 Oct 31; 42(3). PMID: 24170811 Free PMC article.
Mobile phone tracking: in support of modelling traffic-related air pollution contribution to individual exposure and its implications for public health impact assessment. Hai-Ying Liu, Erik Skjetne, Mike Kobernus. Environ Health, 2013 Nov 06; 12. PMID: 24188173 Free PMC article.
Synchrony in broadband fluctuation and the 2008 financial crisis. Der Chyan Lin. PLoS One, 2013 Nov 10; 8(10). PMID: 24204782 Free PMC article.
Extension of life span by impaired glucose metabolism in Caenorhabditis elegans is accompanied by structural rearrangements of the transcriptomic network. Steffen Priebe, Uwe Menzel, +4 authors, Reinhard Guthke. less PLoS One, 2013 Nov 10; 8(10). PMID: 24204961 Free PMC article.
Construction and application of a protein interaction map for white spot syndrome virus (WSSV). Pakkakul Sangsuriya, Jiun-Yan Huang, +8 authors, Chu-Fang Lo. less Mol Cell Proteomics, 2013 Nov 13; 13(1). PMID: 24217020 Free PMC article.
Frequency response and gap tuning for nonlinear electrical oscillator networks. Harish S Bhat, Garnet J Vaz. PLoS One, 2013 Nov 14; 8(11). PMID: 24223751 Free PMC article.
Hepatitis C transmission and treatment in contact networks of people who inject drugs. David A Rolls, Rachel Sacks-Davis, +4 authors, Margaret Hellard. less PLoS One, 2013 Nov 14; 8(11). PMID: 24223787 Free PMC article.
A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle. Philipp Widmann, Antonio Reverter, +5 authors, Christa Kuehn. less BMC Genomics, 2013 Nov 20; 14. PMID: 24246134 Free PMC article.
Braess's paradox in epidemic game: better condition results in less payoff. Hai-Feng Zhang, Zimo Yang, +2 authors, Zhi-Xi Wu, Bing-Hong Wang, Tao Zhou. less Sci Rep, 2013 Nov 22; 3. PMID: 24256996 Free PMC article.
Sharp bounds and normalization of Wiener-type indices. Dechao Tian, Kwok Pui Choi. PLoS One, 2013 Nov 22; 8(11). PMID: 24260118 Free PMC article.
Geography and similarity of regional cuisines in China. Yu-Xiao Zhu, Junming Huang, +3 authors, Yong-Yeol Ahn. less PLoS One, 2013 Nov 22; 8(11). PMID: 24260166 Free PMC article.
Vulnerability analysis and passenger source prediction in urban rail transit networks. Junjie Wang, Yishuai Li, +2 authors, Jingyu Liu, Kun He, Pu Wang. less PLoS One, 2013 Nov 22; 8(11). PMID: 24260355 Free PMC article.
Insights into failed lexical retrieval from network science. Michael S Vitevitch, Kit Ying Chan, Rutherford Goldstein. Cogn Psychol, 2013 Nov 26; 68. PMID: 24269488 Free PMC article.
Long-period rhythmic synchronous firing in a scale-free network. Yuanyuan Mi, Xuhong Liao, +4 authors, Si Wu. less Proc Natl Acad Sci U S A, 2013 Nov 28; 110(50). PMID: 24277831 Free PMC article.
Stationary distribution of self-organized states and biological information generation. Hyung Jun Woo. Sci Rep, 2013 Nov 28; 3. PMID: 24281357 Free PMC article.
Sharing information to reconstruct patient-specific pathways in heterogeneous diseases. Anthony Gitter, Alfredo Braunstein, +5 authors, Ernest Fraenkel. less Pac Symp Biocomput, 2013 Dec 04;. PMID: 24297532 Free PMC article.
A maximum entropy framework for nonexponential distributions. Jack Peterson, Purushottam D Dixit, Ken A Dill. Proc Natl Acad Sci U S A, 2013 Dec 04; 110(51). PMID: 24297895 Free PMC article.
Novel factors in the pathogenesis of psoriasis and potential drug candidates are found with systems biology approach. Máté Manczinger, Lajos Kemény. PLoS One, 2013 Dec 05; 8(11). PMID: 24303025 Free PMC article.
Metapopulation dynamics enable persistence of influenza A, including A/H5N1, in poultry. Parviez Rana Hosseini, Trevon Fuller, +8 authors, Peter Daszak. less PLoS One, 2013 Dec 07; 8(12). PMID: 24312455 Free PMC article.
Universality in network dynamics. Baruch Barzel, Albert-László Barabási. Nat Phys, 2013 Dec 10; 9. PMID: 24319492 Free PMC article.
A permutation testing framework to compare groups of brain networks. Sean L Simpson, Robert G Lyday, +2 authors, Satoru Hayasaka, Anthony P Marsh, Paul J Laurienti. less Front Comput Neurosci, 2013 Dec 11; 7. PMID: 24324431 Free PMC article.
Spontaneous centralization of control in a network of company ownerships. Sebastian M Krause, Tiago P Peixoto, Stefan Bornholdt. PLoS One, 2013 Dec 11; 8(12). PMID: 24324594 Free PMC article.
Emergence of scaling in human-interest dynamics. Zhi-Dan Zhao, Zimo Yang, +3 authors, Zike Zhang, Tao Zhou, Zi-Gang Huang, Ying-Cheng Lai. less Sci Rep, 2013 Dec 12; 3. PMID: 24326949 Free PMC article.
Network reliability: the effect of local network structure on diffusive processes. Mina Youssef, Yasamin Khorramzadeh, Stephen Eubank. Phys Rev E Stat Nonlin Soft Matter Phys, 2013 Dec 18; 88(5). PMID: 24329321 Free PMC article.
Social structure of a semi-free ranging group of mandrills (Mandrillus sphinx): a social network analysis. Céline Bret, Cédric Sueur, +3 authors, Odile Petit. less PLoS One, 2013 Dec 18; 8(12). PMID: 24340074 Free PMC article.
Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium. Jesper T Rosenkrantz, Henk Aarts, +7 authors, Carmen Pin. less BMC Microbiol, 2013 Dec 19; 13. PMID: 24345035 Free PMC article.
Dynamic source routing strategy for two-level flows on scale-free networks. Zhong-Yuan Jiang, Man-Gui Liang, Jia-Jing Wu. PLoS One, 2013 Dec 19; 8(12). PMID: 24349207 Free PMC article.
Simulating the dynamics of scale-free networks via optimization. Tiago Alves Schieber, Martín Gómez Ravetti. PLoS One, 2013 Dec 20; 8(12). PMID: 24353752 Free PMC article.
The robustness analysis of wireless sensor networks under uncertain interference. Changjian Deng. ScientificWorldJournal, 2013 Dec 24; 2013. PMID: 24363613 Free PMC article.
A comparative study of theoretical graph models for characterizing structural networks of human brain. Xiaojin Li, Xintao Hu, +5 authors, Lingjiang Li. less Int J Biomed Imaging, 2013 Dec 27; 2013. PMID: 24369454 Free PMC article.
Study on incompatibility of traditional chinese medicine: evidence from formula network, chemical space, and metabolism room. Wei Long, Xiao-Dong Zhang, +8 authors, Sai-Jun Fan. less Evid Based Complement Alternat Med, 2013 Dec 27; 2013. PMID: 24369478 Free PMC article.
Joint conditional Gaussian graphical models with multiple sources of genomic data. Hyonho Chun, Min Chen, Bing Li, Hongyu Zhao. Front Genet, 2014 Jan 02; 4. PMID: 24381584 Free PMC article.
Matching rules for collective behaviors on complex networks: optimal configurations for vibration frequencies of networked harmonic oscillators. Meng Zhan, Shuai Liu, Zhiwei He. PLoS One, 2014 Jan 05; 8(12). PMID: 24386088 Free PMC article.
Extracting tag hierarchies. Gergely Tibély, Péter Pollner, Tamás Vicsek, Gergely Palla. PLoS One, 2014 Jan 07; 8(12). PMID: 24391901 Free PMC article.
Dispersal-induced destabilization of metapopulations and oscillatory Turing patterns in ecological networks. Shigefumi Hata, Hiroya Nakao, Alexander S Mikhailov. Sci Rep, 2014 Jan 08; 4. PMID: 24394959 Free PMC article.
Inference of neuronal network spike dynamics and topology from calcium imaging data. Henry Lütcke, Felipe Gerhard, +2 authors, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. less Front Neural Circuits, 2014 Jan 09; 7. PMID: 24399936 Free PMC article.
Cascading failures in spatially-embedded random networks. Andrea Asztalos, Sameet Sreenivasan, Boleslaw K Szymanski, Gyorgy Korniss. PLoS One, 2014 Jan 09; 9(1). PMID: 24400101 Free PMC article.
Evolutionary significance of the role of family units in a broader social system. Bradford R Greening, Nina H Fefferman. Sci Rep, 2014 Jan 10; 4. PMID: 24402205 Free PMC article.
What You Believe Travels Differently: Information and Infection Dynamics across Sub-networks. Patrick Grim, Christopher Reade, +2 authors, Daniel J Singer, Steven Fisher, Stephen Majewicz. less Connect (Tor), 2010 Dec 01; 30(2). PMID: 24409006 Free PMC article.
Impulsive control for synchronizing delayed discrete complex networks with switching topology. Chaojie Li, David Y Gao, Chao Liu, Guo Chen. Neural Comput Appl, 2014 Jan 15; 24(1). PMID: 24415851 Free PMC article.
Abruptness of cascade failures in power grids. Sakshi Pahwa, Caterina Scoglio, Antonio Scala. Sci Rep, 2014 Jan 16; 4. PMID: 24424239 Free PMC article.
On Learning Cluster Coefficient of Private Networks. Yue Wang, Xintao Wu, Jun Zhu, Yang Xiang. Soc Netw Anal Min, 2012 Jan 01;. PMID: 24429843 Free PMC article.
To each according to its degree: the meritocracy and topocracy of embedded markets. J Borondo, F Borondo, C Rodriguez-Sickert, C A Hidalgo. Sci Rep, 2014 Jan 22; 4. PMID: 24445533 Free PMC article.
Neurodevelopmental alterations of large-scale structural networks in children with new-onset epilepsy. Leonardo Bonilha, Ali Tabesh, +4 authors, Jack J Lin. less Hum Brain Mapp, 2014 Jan 24; 35(8). PMID: 24453089 Free PMC article.
Rumor diffusion in an interests-based dynamic social network. Mingsheng Tang, Xinjun Mao, Zahia Guessoum, Huiping Zhou. ScientificWorldJournal, 2014 Jan 24; 2013. PMID: 24453911 Free PMC article.
The Laplacian spectrum of neural networks. Siemon C de Lange, Marcel A de Reus, Martijn P van den Heuvel. Front Comput Neurosci, 2014 Jan 24; 7. PMID: 24454286 Free PMC article.
Allosteric regulation of the Hsp90 dynamics and stability by client recruiter cochaperones: protein structure network modeling. Kristin Blacklock, Gennady M Verkhivker. PLoS One, 2014 Jan 28; 9(1). PMID: 24466147 Free PMC article.
Non-redundant unique interface structures as templates for modeling protein interactions. Engin Cukuroglu, Attila Gursoy, Ruth Nussinov, Ozlem Keskin. PLoS One, 2014 Jan 30; 9(1). PMID: 24475173 Free PMC article.
Uncovering hidden nodes in complex networks in the presence of noise. Ri-Qi Su, Ying-Cheng Lai, Xiao Wang, Younghae Do. Sci Rep, 2014 Feb 04; 4. PMID: 24487720 Free PMC article.
Optimal transport on weighted networks for different node delivery capability schemes. Fei Shao. ScientificWorldJournal, 2014 Feb 04; 2013. PMID: 24489500 Free PMC article.
Emergence of small-world anatomical networks in self-organizing clustered neuronal cultures. Daniel de Santos-Sierra, Irene Sendiña-Nadal, +5 authors, Stefano Boccaletti. less PLoS One, 2014 Feb 04; 9(1). PMID: 24489675 Free PMC article.
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. Sergiu Netotea, David Sundell, Nathaniel R Street, Torgeir R Hvidsten. BMC Genomics, 2014 Feb 07; 15. PMID: 24498971 Free PMC article.
Analytical reasoning task reveals limits of social learning in networks. Iyad Rahwan, Dmytro Krasnoshtan, Azim Shariff, Jean-François Bonnefon. J R Soc Interface, 2014 Feb 07; 11(93). PMID: 24501275 Free PMC article.
Do the rich get richer? An empirical analysis of the Bitcoin transaction network. Dániel Kondor, Márton Pósfai, István Csabai, Gábor Vattay. PLoS One, 2014 Feb 08; 9(2). PMID: 24505257 Free PMC article.
Long-distance travel behaviours accelerate and aggravate the large-scale spatial spreading of infectious diseases. Zhijing Xu, Zhenghu Zu, +3 authors, Tao Zheng, Wendou Zhang, Qing Xu, Jinjie Liu. less Comput Math Methods Med, 2014 Feb 11; 2014. PMID: 24511324 Free PMC article.
Spontaneous symmetry breaking in interdependent networked game. Qing Jin, Lin Wang, Cheng-Yi Xia, Zhen Wang. Sci Rep, 2014 Feb 15; 4. PMID: 24526076 Free PMC article.
Self-healing networks: redundancy and structure. Walter Quattrociocchi, Guido Caldarelli, Antonio Scala. PLoS One, 2014 Feb 18; 9(2). PMID: 24533065 Free PMC article.
Inferring metabolic networks using the Bayesian adaptive graphical lasso with informative priors. Christine Peterson, Marina Vannucci, +3 authors, Mirjana Maletić-Savatić. less Stat Interface, 2014 Feb 18; 6(4). PMID: 24533172 Free PMC article.
The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks. Frank Emmert-Streib, Ricardo de Matos Simoes, +2 authors, Paul Mullan, Benjamin Haibe-Kains, Matthias Dehmer. less Front Genet, 2014 Feb 20; 5. PMID: 24550935 Free PMC article.
Encapsulating urban traffic rhythms into road networks. Junjie Wang, Dong Wei, +2 authors, Kun He, Hang Gong, Pu Wang. less Sci Rep, 2014 Feb 21; 4. PMID: 24553203 Free PMC article.
Learning dynamics explains human behaviour in prisoner's dilemma on networks. Giulio Cimini, Angel Sánchez. J R Soc Interface, 2014 Feb 21; 11(94). PMID: 24554577 Free PMC article.
Social network analysis of biomedical research collaboration networks in a CTSA institution. Jiang Bian, Mengjun Xie, +3 authors, William Hogan. less J Biomed Inform, 2014 Feb 25; 52. PMID: 24560679 Free PMC article.
The log-dynamic brain: how skewed distributions affect network operations. György Buzsáki, Kenji Mizuseki. Nat Rev Neurosci, 2014 Feb 27; 15(4). PMID: 24569488 Free PMC article. Highly Cited. Review.
Reconfiguration and search of social networks. Lianming Zhang, Aoyuan Peng, Jianping Yu. ScientificWorldJournal, 2014 Feb 28; 2013. PMID: 24574861 Free PMC article.
Node interference and robustness: performing virtual knock-out experiments on biological networks: the case of leukocyte integrin activation network. Giovanni Scardoni, Alessio Montresor, Gabriele Tosadori, Carlo Laudanna. PLoS One, 2014 Mar 04; 9(2). PMID: 24586448 Free PMC article.
Robustness of controllability for networks based on edge-attack. Sen Nie, Xuwen Wang, +2 authors, Haifeng Zhang, Qilang Li, Binghong Wang. less PLoS One, 2014 Mar 04; 9(2). PMID: 24586507 Free PMC article.
Characterizing and modeling the dynamics of activity and popularity. Peng Zhang, Menghui Li, +2 authors, Liang Gao, Ying Fan, Zengru Di. less PLoS One, 2014 Mar 04; 9(2). PMID: 24586586 Free PMC article.
Modelling the yeast interactome. Vuk Janjić, Roded Sharan, Nataša Pržulj. Sci Rep, 2014 Mar 05; 4. PMID: 24589662 Free PMC article.
Principles of scientific research team formation and evolution. Staša Milojević. Proc Natl Acad Sci U S A, 2014 Mar 05; 111(11). PMID: 24591626 Free PMC article.
Revealing missing parts of the interactome via link prediction. Yuriy Hulovatyy, Ryan W Solava, Tijana Milenković. PLoS One, 2014 Mar 07; 9(3). PMID: 24594900 Free PMC article.
Gravity effects on information filtering and network evolving. Jin-Hu Liu, Zi-Ke Zhang, +3 authors, Xueqi Wang. less PLoS One, 2014 Mar 14; 9(3). PMID: 24622162 Free PMC article.
Synchrony based learning rule of Hopfield like chaotic neural networks with desirable structure. Nariman Mahdavi, Jürgen Kurths. Cogn Neurodyn, 2014 Mar 14; 8(2). PMID: 24624234 Free PMC article.
Characterization of genes for beef marbling based on applying gene coexpression network. Dajeong Lim, Nam-Kuk Kim, +4 authors, Heebal Kim. less Int J Genomics, 2014 Mar 14; 2014. PMID: 24624372 Free PMC article.
A knowledge generation model via the hypernetwork. Jian-Guo Liu, Guang-Yong Yang, Zhao-Long Hu. PLoS One, 2014 Mar 15; 9(3). PMID: 24626143 Free PMC article.
Cooperation in networks where the learning environment differs from the interaction environment. Jianlei Zhang, Chunyan Zhang, Tianguang Chu, Franz J Weissing. PLoS One, 2014 Mar 19; 9(3). PMID: 24632774 Free PMC article.
Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism. Pierre Blavy, Florence Gondret, +2 authors, Sandrine Lagarrigue, Jaap van Milgen, Anne Siegel. less BMC Syst Biol, 2014 Mar 19; 8. PMID: 24635915 Free PMC article.
Discovery of a strongly-interrelated gene network in corals under constant darkness by correlation analysis after wavelet transform on complex network model. Longlong Liu, Jieqiong Qu, +5 authors, Guiming Liu. less PLoS One, 2014 Mar 22; 9(3). PMID: 24651851 Free PMC article.
Biased imitation in coupled evolutionary games in interdependent networks. M D Santos, S N Dorogovtsev, J F F Mendes. Sci Rep, 2014 Mar 25; 4. PMID: 24658580 Free PMC article.
Generalised power graph compression reveals dominant relationship patterns in complex networks. Sebastian E Ahnert. Sci Rep, 2014 Mar 26; 4. PMID: 24663099 Free PMC article.
Topological and Historical Considerations for Infectious Disease Transmission among Injecting Drug Users in Bushwick, Brooklyn (USA). Kirk Dombrowski, Richard Curtis, Samuel Friedman, Bilal Khan. World J AIDS, 2014 Mar 29; 3(1). PMID: 24672745 Free PMC article.
Revealing the hidden language of complex networks. Ömer Nebil Yaveroğlu, Noël Malod-Dognin, +5 authors, Nataša Pržulj. less Sci Rep, 2014 Apr 02; 4. PMID: 24686408 Free PMC article.
Hamilton's inclusive fitness in finite-structured populations. Peter D Taylor, Wes Maciejewski. Philos Trans R Soc Lond B Biol Sci, 2014 Apr 02; 369(1642). PMID: 24686932 Free PMC article.
Small world network strategies for studying protein structures and binding. Neil R Taylor. Comput Struct Biotechnol J, 2013 Jan 01; 5. PMID: 24688699 Free PMC article. Review.
Studying the system-level involvement of microRNAs in Parkinson's disease. Paulami Chatterjee, Malay Bhattacharyya, Sanghamitra Bandyopadhyay, Debjani Roy. PLoS One, 2014 Apr 03; 9(4). PMID: 24690883 Free PMC article.
A mesoscale connectome of the mouse brain. Seung Wook Oh, Julie A Harris, +31 authors, Hongkui Zeng. less Nature, 2014 Apr 04; 508(7495). PMID: 24695228 Free PMC article. Highly Cited.
Mapping the structure and dynamics of genomics-related MeSH terms complex networks. Jesús M Siqueiros-García, Enrique Hernández-Lemus, Rodrigo García-Herrera, Andrea Robina-Galatas. PLoS One, 2014 Apr 05; 9(4). PMID: 24699262 Free PMC article.
Estimating mean first passage time of biased random walks with short relaxation time on complex networks. Zhuo Qi Lee, Wen-Jing Hsu, Miao Lin. PLoS One, 2014 Apr 05; 9(4). PMID: 24699325 Free PMC article.
Word formation is aware of morpheme family size. Daniela Barbara Keller, Jörg Schultz. PLoS One, 2014 Apr 08; 9(4). PMID: 24705626 Free PMC article.
Information transfer and criticality in the Ising model on the human connectome. Daniele Marinazzo, Mario Pellicoro, +3 authors, Sebastiano Stramaglia. less PLoS One, 2014 Apr 08; 9(4). PMID: 24705627 Free PMC article.
Disaster Response on September 11, 2001 Through the Lens of Statistical Network Analysis. Michael Schweinberger, Miruna Petrescu-Prahova, Duy Quang Vu. Soc Networks, 2014 Apr 08; 37. PMID: 24707073 Free PMC article.
CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction. Florent E Angly, Paul G Dennis, +3 authors, Gene W Tyson. less Microbiome, 2014 Apr 09; 2. PMID: 24708850 Free PMC article. Highly Cited.
Reverse engineering cellular networks with information theoretic methods. Alejandro F Villaverde, John Ross, Julio R Banga. Cells, 2013 Jan 01; 2(2). PMID: 24709703 Free PMC article.
An application of evolutionary game theory to social dilemmas: the traveler's dilemma and the minimum effort coordination game. Swami Iyer, Joshua Reyes, Timothy Killingback. PLoS One, 2014 Apr 09; 9(4). PMID: 24709851 Free PMC article.
Generalized friendship paradox in complex networks: the case of scientific collaboration. Young-Ho Eom, Hang-Hyun Jo. Sci Rep, 2014 Apr 10; 4. PMID: 24714092 Free PMC article.
Simulating adverse event spontaneous reporting systems as preferential attachment networks: application to the Vaccine Adverse Event Reporting System. J Scott, T Botsis, R Ball. Appl Clin Inform, 2014 Apr 16; 5(1). PMID: 24734134 Free PMC article.
Structural controllability and controlling centrality of temporal networks. Yujian Pan, Xiang Li. PLoS One, 2014 Apr 22; 9(4). PMID: 24747676 Free PMC article.
Stochastic heterogeneous interaction promotes cooperation in spatial prisoner's dilemma game. Ping Zhu, Guiyi Wei. PLoS One, 2014 Apr 25; 9(4). PMID: 24759921 Free PMC article.
Evolutionary game dynamics in populations with heterogenous structures. Wes Maciejewski, Feng Fu, Christoph Hauert. PLoS Comput Biol, 2014 Apr 26; 10(4). PMID: 24762474 Free PMC article.
Adaptive cluster synchronization of directed complex networks with time delays. Heng Liu, Xingyuan Wang, Guozhen Tan. PLoS One, 2014 Apr 26; 9(4). PMID: 24763228 Free PMC article.
Emergence of blind areas in information spreading. Zi-Ke Zhang, Chu-Xu Zhang, Xiao-Pu Han, Chuang Liu. PLoS One, 2014 Apr 26; 9(4). PMID: 24763456 Free PMC article.
Field experiments of success-breeds-success dynamics. Arnout van de Rijt, Soong Moon Kang, Michael Restivo, Akshay Patil. Proc Natl Acad Sci U S A, 2014 Apr 30; 111(19). PMID: 24778230 Free PMC article.
Comparative analysis of the effectiveness of three immunization strategies in controlling disease outbreaks in realistic social networks. Zhijing Xu, Zhenghu Zu, +3 authors, Tao Zheng, Wendou Zhang, Qing Xu, Jinjie Liu. less PLoS One, 2014 May 03; 9(5). PMID: 24787718 Free PMC article.
Topological properties of robust biological and computational networks. Saket Navlakha, Xin He, Christos Faloutsos, Ziv Bar-Joseph. J R Soc Interface, 2014 May 03; 11(96). PMID: 24789562 Free PMC article.
From sparse to dense and from assortative to disassortative in online social networks. Menghui Li, Shuguang Guan, +5 authors, Choy-Heng Lai. less Sci Rep, 2014 May 07; 4. PMID: 24798703 Free PMC article.
Supervised clustering based on DPClusO: prediction of plant-disease relations using Jamu formulas of KNApSAcK database. Sony Hartono Wijaya, Husnawati Husnawati, +7 authors, Shigehiko Kanaya. less Biomed Res Int, 2014 May 08; 2014. PMID: 24804251 Free PMC article.
Systematic spatial mapping of proteins at exocytic and endocytic structures. Ben T Larson, Kem A Sochacki, Jonathan M Kindem, Justin W Taraska. Mol Biol Cell, 2014 May 09; 25(13). PMID: 24807904 Free PMC article.
Synchronization criteria of discrete-time complex networks with time-varying delays and parameter uncertainties. P Balasubramaniam, L Jarina Banu. Cogn Neurodyn, 2014 May 09; 8(3). PMID: 24808929 Free PMC article.
Ranking reputation and quality in online rating systems. Hao Liao, An Zeng, +3 authors, Yi-Cheng Zhang. less PLoS One, 2014 May 14; 9(5). PMID: 24819119 Free PMC article.
Particle swarm optimization with scale-free interactions. Chen Liu, Wen-Bo Du, Wen-Xu Wang. PLoS One, 2014 May 27; 9(5). PMID: 24859007 Free PMC article.
Opinion dynamics on interacting networks: media competition and social influence. Walter Quattrociocchi, Guido Caldarelli, Antonio Scala. Sci Rep, 2014 May 28; 4. PMID: 24861995 Free PMC article.
Network analysis identifies protein clusters of functional importance in juvenile idiopathic arthritis. Adam Stevens, Stefan Meyer, +2 authors, Daniel Hanson, Peter Clayton, Rachelle P Donn. less Arthritis Res Ther, 2014 Jun 03; 16(3). PMID: 24886659 Free PMC article.
Deciphering microbial interactions and detecting keystone species with co-occurrence networks. David Berry, Stefanie Widder. Front Microbiol, 2014 Jun 07; 5. PMID: 24904535 Free PMC article. Highly Cited.
Navigability of interconnected networks under random failures. Manlio De Domenico, Albert Solé-Ribalta, Sergio Gómez, Alex Arenas. Proc Natl Acad Sci U S A, 2014 Jun 10; 111(23). PMID: 24912174 Free PMC article.
Chemical space networks: a powerful new paradigm for the description of chemical space. Gerald M Maggiora, Jürgen Bajorath. J Comput Aided Mol Des, 2014 Jun 14; 28(8). PMID: 24925682
Large scale analysis of signal reachability. Andrei Todor, Haitham Gabr, Alin Dobra, Tamer Kahveci. Bioinformatics, 2014 Jun 17; 30(12). PMID: 24932011 Free PMC article.
Extracting the globally and locally adaptive backbone of complex networks. Xiaohang Zhang, Zecong Zhang, +2 authors, Han Zhao, Qi Wang, Ji Zhu. less PLoS One, 2014 Jun 18; 9(6). PMID: 24936975 Free PMC article.
Short-term effects of different genetically modified maize varieties on arthropod food web properties: an experimental field assessment. Ágnes Szénási, Zoltán Pálinkás, +2 authors, Mihály Zalai, Oswald J Schmitz, Adalbert Balog. less Sci Rep, 2014 Jun 18; 4. PMID: 24937207 Free PMC article.
Connection-type-specific biases make uniform random network models consistent with cortical recordings. Christian Tomm, Michael Avermann, +2 authors, Carl Petersen, Wulfram Gerstner, Tim P Vogels. less J Neurophysiol, 2014 Jun 20; 112(8). PMID: 24944218 Free PMC article.
Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses. Nadine Töpfer, Federico Scossa, Alisdair Fernie, Zoran Nikoloski. PLoS Comput Biol, 2014 Jun 20; 10(6). PMID: 24946036 Free PMC article.
Functional brain networks formed using cross-sample entropy are scale free. Walter S Pritchard, Paul J Laurienti, Jonathan H Burdette, Satoru Hayasaka. Brain Connect, 2014 Jun 20; 4(6). PMID: 24946057 Free PMC article.
Connecting core percolation and controllability of complex networks. Tao Jia, Márton Pósfai. Sci Rep, 2014 Jun 21; 4. PMID: 24946797 Free PMC article.
Mean first-passage time for maximal-entropy random walks in complex networks. Yuan Lin, Zhongzhi Zhang. Sci Rep, 2014 Jun 21; 4. PMID: 24947015 Free PMC article.
Selecting biologically informative genes in co-expression networks with a centrality score. Francisco J Azuaje. Biol Direct, 2014 Jun 21; 9. PMID: 24947308 Free PMC article.
Multilevel hierarchical kernel spectral clustering for real-life large scale complex networks. Raghvendra Mall, Rocco Langone, Johan A K Suykens. PLoS One, 2014 Jun 21; 9(6). PMID: 24949877 Free PMC article.
Leveraging social influence to address overweight and obesity using agent-based models: the role of adolescent social networks. J Zhang, L Tong, +3 authors, D A Shoham. less Soc Sci Med, 2014 Jun 22; 125. PMID: 24951404 Free PMC article.
Controllability and observability analysis for vertex domination centrality in directed networks. Bingbo Wang, Lin Gao, +2 authors, Yong Gao, Yue Deng, Yu Wang. less Sci Rep, 2014 Jun 24; 4. PMID: 24954137 Free PMC article.
Metabolomics of ApcMin/+ mice genetically susceptible to intestinal cancer. Jean-Eudes J Dazard, Yana Sandlers, +2 authors, Stephanie K Doerner, Nathan A Berger, Henri Brunengraber. less BMC Syst Biol, 2014 Jun 24; 8. PMID: 24954394 Free PMC article.
Current understanding of the formation and adaptation of metabolic systems based on network theory. Kazuhiro Takemoto. Metabolites, 2012 Jan 01; 2(3). PMID: 24957641 Free PMC article.
A bio-inspired method for the constrained shortest path problem. Hongping Wang, Xi Lu, +2 authors, Xiaoge Zhang, Qing Wang, Yong Deng. less ScientificWorldJournal, 2014 Jun 25; 2014. PMID: 24959603 Free PMC article.
The mind-brain relationship as a mathematical problem. Giorgio A Ascoli. ISRN Neurosci, 2013 Jan 01; 2013. PMID: 24967307 Free PMC article. Review.
Crimes against humanity: the role of international courts. Eder Milton Schneider, José Roberto Iglesias, Karen Hallberg, Marcelo Néstor Kuperman. PLoS One, 2014 Jun 27; 9(6). PMID: 24967894 Free PMC article.
Bluffing promotes overconfidence on social networks. Kun Li, Rui Cong, Te Wu, Long Wang. Sci Rep, 2014 Jul 01; 4. PMID: 24974793 Free PMC article.
Defection and extortion as unexpected catalysts of unconditional cooperation in structured populations. Attila Szolnoki, Matjaž Perc. Sci Rep, 2014 Jul 01; 4. PMID: 24975112 Free PMC article.
Discovering the influences of complex network effects on recovering large scale multiagent systems. Yang Xu, Pengfei Liu, Xiang Li, Wei Ren. ScientificWorldJournal, 2014 Jul 02; 2014. PMID: 24982947 Free PMC article.
Discovering non-coding RNA elements in Drosophila 3' untranslated regions. Cuncong Zhong, Justen Andrews, Shaojie Zhang. Int J Bioinform Res Appl, 2014 Jul 06; 10(4-5). PMID: 24989864 Free PMC article.
The Matthew effect in empirical data. Matjaž Perc. J R Soc Interface, 2014 Jul 06; 11(98). PMID: 24990288 Free PMC article. Review.
ABC and IFC: modules detection method for PPI network. Xiujuan Lei, Fang-Xiang Wu, Jianfang Tian, Jie Zhao. Biomed Res Int, 2014 Jul 06; 2014. PMID: 24991575 Free PMC article.
Predicting co-author relationship in medical co-authorship networks. Qi Yu, Chao Long, +3 authors, Yanhua Lv, Hongfang Shao, Peifeng He, Zhiguang Duan. less PLoS One, 2014 Jul 06; 9(7). PMID: 24991920 Free PMC article.
Computational prediction of microRNA networks incorporating environmental toxicity and disease etiology. Jie Li, Zengrui Wu, +3 authors, Yun Tang. less Sci Rep, 2014 Jul 06; 4. PMID: 24992957 Free PMC article.
DyCoNet: a Gephi plugin for community detection in dynamic complex networks. Julie Kauffman, Aristotelis Kittas, Laura Bennett, Sophia Tsoka. PLoS One, 2014 Jul 08; 9(7). PMID: 25000497 Free PMC article.
A simple generative model of collective online behavior. James P Gleeson, Davide Cellai, +2 authors, Jukka-Pekka Onnela, Mason A Porter, Felix Reed-Tsochas. less Proc Natl Acad Sci U S A, 2014 Jul 09; 111(29). PMID: 25002470 Free PMC article.
An integrative analysis of meningioma tumors reveals the determinant genes and pathways of malignant transformation. José Carlos Iglesias Gómez, Adrián Mosquera Orgueira. Front Oncol, 2014 Jul 09; 4. PMID: 25003081 Free PMC article.
An algorithm for critical nodes problem in social networks based on Owen value. Xue-Guang Wang. ScientificWorldJournal, 2014 Jul 10; 2014. PMID: 25006592 Free PMC article.
Large-scale structure of a network of co-occurring MeSH terms: statistical analysis of macroscopic properties. Andrej Kastrin, Thomas C Rindflesch, Dimitar Hristovski. PLoS One, 2014 Jul 10; 9(7). PMID: 25006672 Free PMC article.
On the correlation between reservoir metrics and performance for time series classification under the influence of synaptic plasticity. Joseph Chrol-Cannon, Yaochu Jin. PLoS One, 2014 Jul 11; 9(7). PMID: 25010415 Free PMC article.
Effects of behavioral response and vaccination policy on epidemic spreading--an approach based on evolutionary-game dynamics. Hai-Feng Zhang, Zhi-Xi Wu, Ming Tang, Ying-Cheng Lai. Sci Rep, 2014 Jul 12; 4. PMID: 25011424 Free PMC article.
The role of endogenous and exogenous mechanisms in the formation of R&D networks. Mario V Tomasello, Nicola Perra, +2 authors, Claudio J Tessone, Márton Karsai, Frank Schweitzer. less Sci Rep, 2014 Jul 16; 4. PMID: 25022561 Free PMC article.
An integrated genomic and metabolomic framework for cell wall biology in rice. Kai Guo, Weihua Zou, +9 authors, Liangcai Peng. less BMC Genomics, 2014 Jul 16; 15. PMID: 25023612 Free PMC article.
Rapid innovation diffusion in social networks. Gabriel E Kreindler, H Peyton Young. Proc Natl Acad Sci U S A, 2014 Jul 16; 111 Suppl 3. PMID: 25024191 Free PMC article.
Phylodynamic analysis reveals CRF01_AE dissemination between Japan and neighboring Asian countries and the role of intravenous drug use in transmission. Teiichiro Shiino, Junko Hattori, +3 authors, Japanese Drug Resistance HIV-1 Surveillance Network. less PLoS One, 2014 Jul 16; 9(7). PMID: 25025900 Free PMC article.
Random and targeted interventions for epidemic control in metapopulation models. Gouhei Tanaka, Chiyori Urabe, Kazuyuki Aihara. Sci Rep, 2014 Jul 17; 4. PMID: 25026972 Free PMC article.
Origin and structure of dynamic cooperative networks. Lucas Wardil, Christoph Hauert. Sci Rep, 2014 Jul 18; 4. PMID: 25030202 Free PMC article.
Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data. Lisette J A Kogelman, Haja N Kadarmideen. BMC Syst Biol, 2014 Jul 18; 8 Suppl 2. PMID: 25032480 Free PMC article.
The human plasma membrane peripherome: visualization and analysis of interactions. Katerina C Nastou, Georgios N Tsaousis, +2 authors, Kimon E Kremizas, Zoi I Litou, Stavros J Hamodrakas. less Biomed Res Int, 2014 Jul 25; 2014. PMID: 25057483 Free PMC article.
PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks. Hung-Cuong Trinh, Duc-Hau Le, Yung-Keun Kwon. PLoS One, 2014 Jul 25; 9(7). PMID: 25058310 Free PMC article.
Online community detection for large complex networks. Gang Pan, Wangsheng Zhang, Zhaohui Wu, Shijian Li. PLoS One, 2014 Jul 26; 9(7). PMID: 25061683 Free PMC article.
Functional and genetic analysis of the colon cancer network. Frank Emmert-Streib, Ricardo de Matos Simoes, +5 authors, Frederick Campbell. less BMC Bioinformatics, 2014 Aug 01; 15 Suppl 6. PMID: 25079297 Free PMC article.
A new method for constructing networks from binary data. Claudia D van Borkulo, Denny Borsboom, +4 authors, Lourens J Waldorp. less Sci Rep, 2014 Aug 02; 4. PMID: 25082149 Free PMC article. Highly Cited.
Identifying node role in social network based on multiple indicators. Shaobin Huang, Tianyang Lv, +3 authors, Chao Wen. less PLoS One, 2014 Aug 05; 9(8). PMID: 25089823 Free PMC article.
A sparse Ising model with covariates. Jie Cheng, Elizaveta Levina, Pei Wang, Ji Zhu. Biometrics, 2014 Aug 08; 70(4). PMID: 25099186 Free PMC article.
Optimal distribution of incentives for public cooperation in heterogeneous interaction environments. Xiaojie Chen, Matjaž Perc. Front Behav Neurosci, 2014 Aug 08; 8. PMID: 25100959 Free PMC article.
A network-based approach to dissect the cilia/centrosome complex interactome. Roberto Amato, Manuela Morleo, +2 authors, Laura Giaquinto, Diego di Bernardo, Brunella Franco. less BMC Genomics, 2014 Aug 12; 15. PMID: 25102769 Free PMC article.
Target network differences between western drugs and Chinese herbal ingredients in treating cardiovascular disease. Peng Fu, Linlin Yang, +3 authors, Yi Sun, Li Ye, Zhiwei Cao, Kailin Tang. less BMC Bioinformatics, 2014 Aug 12; 15 Suppl 4. PMID: 25104437 Free PMC article.
A review of norms and normative multiagent systems. Moamin A Mahmoud, Mohd Sharifuddin Ahmad, Mohd Zaliman Mohd Yusoff, Aida Mustapha. ScientificWorldJournal, 2014 Aug 12; 2014. PMID: 25110739 Free PMC article. Review.
Collective credit allocation in science. Hua-Wei Shen, Albert-László Barabási. Proc Natl Acad Sci U S A, 2014 Aug 13; 111(34). PMID: 25114238 Free PMC article.
The metabolism and growth of web forums. Lingfei Wu, Jiang Zhang, Min Zhao. PLoS One, 2014 Aug 15; 9(8). PMID: 25115897 Free PMC article.
The rich get richer: brain injury elicits hyperconnectivity in core subnetworks. Frank G Hillary, Sarah M Rajtmajer, +5 authors, Glenn R Wylie. less PLoS One, 2014 Aug 15; 9(8). PMID: 25121760 Free PMC article.
Bursts and heavy tails in temporal and sequential dynamics of foraging decisions. Kanghoon Jung, Hyeran Jang, Jerald D Kralik, Jaeseung Jeong. PLoS Comput Biol, 2014 Aug 15; 10(8). PMID: 25122498 Free PMC article.
Best of both worlds: promise of combining brain stimulation and brain connectome. Caroline Di Bernardi Luft, Ernesto Pereda, Michael J Banissy, Joydeep Bhattacharya. Front Syst Neurosci, 2014 Aug 16; 8. PMID: 25126060 Free PMC article. Review.
Supergenomic network compression and the discovery of EXP1 as a glutathione transferase inhibited by artesunate. Andreas Martin Lisewski, Joel P Quiros, +12 authors, Olivier Lichtarge. less Cell, 2014 Aug 16; 158(4). PMID: 25126794 Free PMC article.
Large-scale, high-resolution multielectrode-array recording depicts functional network differences of cortical and hippocampal cultures. Shinya Ito, Fang-Chin Yeh, +6 authors, John M Beggs. less PLoS One, 2014 Aug 16; 9(8). PMID: 25126851 Free PMC article.
Predicting the evolution of spreading on complex networks. Duan-Bing Chen, Rui Xiao, An Zeng. Sci Rep, 2014 Aug 19; 4. PMID: 25130862 Free PMC article.
The rise of China in the International Trade Network: a community core detection approach. Zhen Zhu, Federica Cerina, +2 authors, Alessandro Chessa, Guido Caldarelli, Massimo Riccaboni. less PLoS One, 2014 Aug 20; 9(8). PMID: 25136895 Free PMC article.
Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942. Julián Triana, Arnau Montagud, +7 authors, Javier F Urchueguía. less Metabolites, 2014 Aug 21; 4(3). PMID: 25141288 Free PMC article.
Naming game on networks: let everyone be both speaker and hearer. Yuan Gao, Guanrong Chen, Rosa H M Chan. Sci Rep, 2014 Aug 22; 4. PMID: 25143140 Free PMC article.
Analysis of epileptic seizures with complex network. Yan Ni, Yinghua Wang, Tao Yu, Xiaoli Li. Comput Math Methods Med, 2014 Aug 26; 2014. PMID: 25147576 Free PMC article.
Comparative analysis of false discovery rate methods in constructing metabolic association networks. Imhoi Koo, Sen Yao, Xiang Zhang, Seongho Kim. J Bioinform Comput Biol, 2014 Aug 26; 12(4). PMID: 25152043 Free PMC article.
A simple model clarifies the complicated relationships of complex networks. Bojin Zheng, Hongrun Wu, +4 authors, Deyi Li. less Sci Rep, 2014 Aug 28; 4. PMID: 25160506 Free PMC article.
Bayesian inference of natural rankings in incomplete competition networks. Juyong Park, Soon-Hyung Yook. Sci Rep, 2014 Aug 29; 4. PMID: 25163528 Free PMC article.
Web-based experiments for the study of collective social dynamics in cultural markets. Matthew J Salganik, Duncan J Watts. Top Cogn Sci, 2009 Jul 01; 1(3). PMID: 25164996 Free PMC article.
Animal transportation networks. Andrea Perna, Tanya Latty. J R Soc Interface, 2014 Aug 29; 11(100). PMID: 25165598 Free PMC article.
Evolution characteristics of the network core in the Facebook. Jian-Guo Liu, Zhuo-Ming Ren, Qiang Guo, Duan-Bing Chen. PLoS One, 2014 Aug 29; 9(8). PMID: 25165852 Free PMC article.
Local Nash equilibrium in social networks. Yichao Zhang, M A Aziz-Alaoui, Cyrille Bertelle, Jihong Guan. Sci Rep, 2014 Aug 30; 4. PMID: 25169150 Free PMC article.
Generative models of rich clubs in Hebbian neuronal networks and large-scale human brain networks. Petra E Vértes, Aaron Alexander-Bloch, Edward T Bullmore. Philos Trans R Soc Lond B Biol Sci, 2014 Sep 03; 369(1653). PMID: 25180309 Free PMC article.
Dimensionality of social networks using motifs and eigenvalues. Anthony Bonato, David F Gleich, +4 authors, Stephen J Young. less PLoS One, 2014 Sep 05; 9(9). PMID: 25188391 Free PMC article.
Analyzing the international exergy flow network of ferrous metal ores. Hai Qi, Haizhong An, +2 authors, Xiaoqing Hao, Weiqiong Zhong, Yanbing Zhang. less PLoS One, 2014 Sep 05; 9(9). PMID: 25188407 Free PMC article.
Characteristics of the transmission of autoregressive sub-patterns in financial time series. Xiangyun Gao, Haizhong An, +3 authors, Wei Fang, Xuan Huang, Huajiao Li, Weiqiong Zhong. less Sci Rep, 2014 Sep 06; 4. PMID: 25189200 Free PMC article.
Symbolic regression of generative network models. Telmo Menezes, Camille Roth. Sci Rep, 2014 Sep 06; 4. PMID: 25190000 Free PMC article.
Discovering study-specific gene regulatory networks. Valeria Bo, Tanya Curtis, +3 authors, Allan Tucker. less PLoS One, 2014 Sep 06; 9(9). PMID: 25191999 Free PMC article.
Dominating scale-free networks using generalized probabilistic methods. F Molnár, N Derzsy, +3 authors, G Korniss. less Sci Rep, 2014 Sep 10; 4. PMID: 25200937 Free PMC article.
Link prediction in complex networks: a mutual information perspective. Fei Tan, Yongxiang Xia, Boyao Zhu. PLoS One, 2014 Sep 11; 9(9). PMID: 25207920 Free PMC article.
SANTA: quantifying the functional content of molecular networks. Alex J Cornish, Florian Markowetz. PLoS Comput Biol, 2014 Sep 12; 10(9). PMID: 25210953 Free PMC article.
Molecular networks and the evolution of human cognitive specializations. Miles Fontenot, Genevieve Konopka. Curr Opin Genet Dev, 2014 Sep 13; 29. PMID: 25212263 Free PMC article. Review.
Molecular signatures for obesity and associated disorders identified through partial least square regression models. Neeraj Sinha, Sachin Sharma, +5 authors, Samrat Chatterjee. less BMC Syst Biol, 2014 Sep 19; 8. PMID: 25231063 Free PMC article.
The representativeness of a European multi-center network for influenza-like-illness participatory surveillance. Pietro Cantarelli, Marion Debin, +18 authors, Vittoria Colizza. less BMC Public Health, 2014 Sep 23; 14. PMID: 25240865 Free PMC article.
Distributed cooperative regulation for multiagent systems and its applications to power systems: a survey. Jianqiang Hu, Yaping Li, +3 authors, Taiyou Yong, Jinde Cao, Jie Yu, Wenbo Mao. less ScientificWorldJournal, 2014 Sep 23; 2014. PMID: 25243199 Free PMC article. Review.
A novel BA complex network model on color template matching. Risheng Han, Shigen Shen, Guangxue Yue, Hui Ding. ScientificWorldJournal, 2014 Sep 23; 2014. PMID: 25243235 Free PMC article.
Clique of functional hubs orchestrates population bursts in developmentally regulated neural networks. Stefano Luccioli, Eshel Ben-Jacob, +2 authors, Ari Barzilai, Paolo Bonifazi, Alessandro Torcini. less PLoS Comput Biol, 2014 Sep 26; 10(9). PMID: 25255443 Free PMC article.
Network-based statistical comparison of citation topology of bibliographic databases. Lovro Šubelj, Dalibor Fiala, Marko Bajec. Sci Rep, 2014 Sep 30; 4. PMID: 25263231 Free PMC article.
Integrative analysis of cancer imaging readouts by networks. Marco Dominietto, Nicholas Tsinoremas, Enrico Capobianco. Mol Oncol, 2014 Sep 30; 9(1). PMID: 25263240 Free PMC article. Review.
GIANT: a cytoscape plugin for modular networks. Fabio Cumbo, Paola Paci, +2 authors, Daniele Santoni, Luisa Di Paola, Alessandro Giuliani. less PLoS One, 2014 Oct 03; 9(9). PMID: 25275465 Free PMC article.
Network analysis of time-lapse microscopy recordings. Erik Smedler, Seth Malmersjö, Per Uhlén. Front Neural Circuits, 2014 Oct 04; 8. PMID: 25278844 Free PMC article.
Genetic networks governing heart development. Ashley J Waardenberg, Mirana Ramialison, Romaric Bouveret, Richard P Harvey. Cold Spring Harb Perspect Med, 2014 Oct 05; 4(11). PMID: 25280899 Free PMC article. Review.
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. Zhi-Ping Liu, Hulin Wu, Jian Zhu, Hongyu Miao. BMC Bioinformatics, 2014 Oct 05; 15. PMID: 25281301 Free PMC article.
The intrinsically disordered regions of the Drosophila melanogaster Hox protein ultrabithorax select interacting proteins based on partner topology. Hao-Ching Hsiao, Kim L Gonzalez, +3 authors, Sarah E Bondos. less PLoS One, 2014 Oct 07; 9(10). PMID: 25286318 Free PMC article.
Detecting phylogenetic signal in mutualistic interaction networks using a Markov process model. H O Minoarivelo, C Hui, +2 authors, J S Terblanche, S L Kosakovsky Pond, K Scheffler. less Oikos, 2014 Oct 09; 123(10). PMID: 25294947 Free PMC article.
Self-organized criticality as a fundamental property of neural systems. Janina Hesse, Thilo Gross. Front Syst Neurosci, 2014 Oct 09; 8. PMID: 25294989 Free PMC article. Review.
Measuring long-term impact based on network centrality: unraveling cinematic citations. Andreas Spitz, Emőke-Ágnes Horvát. PLoS One, 2014 Oct 09; 9(10). PMID: 25295877 Free PMC article.
Analyzing complex functional brain networks: Fusing statistics and network science to understand the brain*† Sean L Simpson, F DuBois Bowman, Paul J Laurienti. Stat Surv, 2013 Jan 01; 7. PMID: 25309643 Free PMC article.
Beta cell connectivity in pancreatic islets: a type 2 diabetes target? Guy A Rutter, David J Hodson. Cell Mol Life Sci, 2014 Oct 18; 72(3). PMID: 25323131 Review.
Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis. Kate E Killick, David A Magee, +8 authors, Karsten Hokamp. less Front Immunol, 2014 Oct 18; 5. PMID: 25324841 Free PMC article.
A low dimensional approach on network characterization. Benjamin Y S Li, Choujun Zhan, +2 authors, Lam F Yeung, King T Ko, Genke Yang. less PLoS One, 2014 Oct 21; 9(10). PMID: 25329146 Free PMC article.
Estimation of global network statistics from incomplete data. Catherine A Bliss, Christopher M Danforth, Peter Sheridan Dodds. PLoS One, 2014 Oct 23; 9(10). PMID: 25338183 Free PMC article.
Complex contagion process in spreading of online innovation. Márton Karsai, Gerardo Iñiguez, Kimmo Kaski, János Kertész. J R Soc Interface, 2014 Oct 24; 11(101). PMID: 25339685 Free PMC article.
Sampling Networks from Their Posterior Predictive Distribution. Ravi Goyal, Victor De Gruttola, Joseph Blitzstein. Netw Sci (Camb Univ Press), 2014 Oct 24; 2(1). PMID: 25339990 Free PMC article.
Universal flux-fluctuation law in small systems. Zi-Gang Huang, Jia-Qi Dong, Liang Huang, Ying-Cheng Lai. Sci Rep, 2014 Oct 28; 4. PMID: 25345973 Free PMC article.
Universality of fixation probabilities in randomly structured populations. Ben Adlam, Martin A Nowak. Sci Rep, 2014 Oct 28; 4. PMID: 25346111 Free PMC article.
When a text is translated does the complexity of its vocabulary change? Translations and target readerships. Hênio Henrique Aragão Rêgo, Lidia A Braunstein, +2 authors, Sasuke Miyazima. less PLoS One, 2014 Oct 30; 9(10). PMID: 25353343 Free PMC article.
A bridge role metric model for nodes in software networks. Bo Li, Yanli Feng, Shiyu Ge, Dashe Li. PLoS One, 2014 Nov 05; 9(11). PMID: 25364938 Free PMC article.
How structure shapes dynamics: knowledge development in Wikipedia--a network multilevel modeling approach. Iassen Halatchliyski, Ulrike Cress. PLoS One, 2014 Nov 05; 9(11). PMID: 25365319 Free PMC article.
Spatial embedding of structural similarity in the cerebral cortex. H Francis Song, Henry Kennedy, Xiao-Jing Wang. Proc Natl Acad Sci U S A, 2014 Nov 05; 111(46). PMID: 25368200 Free PMC article.
Computational approaches for predicting biomedical research collaborations. Qing Zhang, Hong Yu. PLoS One, 2014 Nov 07; 9(11). PMID: 25375164 Free PMC article.
Structural controllability of complex networks based on preferential matching. Xizhe Zhang, Tianyang Lv, XueYing Yang, Bin Zhang. PLoS One, 2014 Nov 07; 9(11). PMID: 25375628 Free PMC article.
What determines social capital in a social-ecological system? Insights from a network perspective. Michele Barnes-Mauthe, Steven Allen Gray, +2 authors, Shawn Arita, John Lynham, PingSun Leung. less Environ Manage, 2014 Nov 08; 55(2). PMID: 25376745
Impact of roles assignation on heterogeneous populations in evolutionary dictator game. Xinyang Deng, Qi Liu, Rehan Sadiq, Yong Deng. Sci Rep, 2014 Nov 08; 4. PMID: 25377303 Free PMC article.
The biological networks in studying cell signal transduction complexity: The examples of sperm capacitation and of endocannabinoid system. Nicola Bernabò, Barbara Barboni, Mauro Maccarrone. Comput Struct Biotechnol J, 2014 Nov 08; 11(18). PMID: 25379139 Free PMC article. Review.
Systems biology as a comparative approach to understand complex gene expression in neurological diseases. Leticia Diaz-Beltran, Carlos Cano, Dennis P Wall, Francisco J Esteban. Behav Sci (Basel), 2013 Jun 01; 3(2). PMID: 25379238 Free PMC article. Review.
The dynamics of mergers and acquisitions: ancestry as the seminal determinant. Eduardo Viegas, Stuart P Cockburn, Henrik J Jensen, Geoffrey B West. Proc Math Phys Eng Sci, 2014 Nov 11; 470(2171). PMID: 25383025 Free PMC article.
Spatial patterns of close relationships across the lifespan. Hang-Hyun Jo, Jari Saramäki, Robin I M Dunbar, Kimmo Kaski. Sci Rep, 2014 Nov 12; 4. PMID: 25384677 Free PMC article.
Target control of complex networks. Jianxi Gao, Yang-Yu Liu, Raissa M D'Souza, Albert-László Barabási. Nat Commun, 2014 Nov 13; 5. PMID: 25388503 Free PMC article.
Scaling laws in emotion-associated words and corresponding network topology. Takuma Takehara, Fumio Ochiai, Naoto Suzuki. Cogn Process, 2014 Nov 17; 16(2). PMID: 25399403
Immunization of epidemics in multiplex networks. Dawei Zhao, Lianhai Wang, +3 authors, Shudong Li, Zhen Wang, Lin Wang, Bo Gao. less PLoS One, 2014 Nov 18; 9(11). PMID: 25401755 Free PMC article.
Time development in the early history of social networks: link stabilization, group dynamics, and segregation. Jesper Bruun, Ian G Bearden. PLoS One, 2014 Nov 18; 9(11). PMID: 25402449 Free PMC article.
Fragmented Romanian sociology: growth and structure of the collaboration network. Marian-Gabriel Hâncean, Matjaž Perc, Lazăr Vlăsceanu. PLoS One, 2014 Nov 20; 9(11). PMID: 25409180 Free PMC article.
Dissecting the human protein-protein interaction network via phylogenetic decomposition. Cho-Yi Chen, Andy Ho, +2 authors, Hsin-Yuan Huang, Hsueh-Fen Juan, Hsuan-Cheng Huang. less Sci Rep, 2014 Nov 22; 4. PMID: 25412639 Free PMC article.
Moving beyond Stylized Economic Network Models: The Hybrid World of the Indian Firm Ownership Network. Dalhia Mani, James Moody. AJS, 2014 Nov 25; 119(8). PMID: 25418990 Free PMC article.
Epidemics with temporary link deactivation in scale-free networks. Maxim S Shkarayev, Ilker Tunc, Leah B Shaw. J Phys A Math Theor, 2014 Nov 25; 47(45). PMID: 25419231 Free PMC article.
Predicting node degree centrality with the node prominence profile. Yang Yang, Yuxiao Dong, Nitesh V Chawla. Sci Rep, 2014 Nov 29; 4. PMID: 25429797 Free PMC article.
Sexually-dimorphic targeting of functionally-related genes in COPD. Kimberly Glass, John Quackenbush, +4 authors, Dawn L DeMeo. less BMC Syst Biol, 2014 Nov 29; 8. PMID: 25431000 Free PMC article.
Annual research review: Growth connectomics--the organization and reorganization of brain networks during normal and abnormal development. Petra E Vértes, Edward T Bullmore. J Child Psychol Psychiatry, 2014 Dec 03; 56(3). PMID: 25441756 Free PMC article. Highly Cited. Review.
Network analyses of sperm-egg recognition and binding: ready to rethink fertility mechanisms? Nicola Bernabò, Alessandra Ordinelli, +2 authors, Raffaele Di Agostino, Mauro Mattioli, Barbara Barboni. less OMICS, 2014 Dec 03; 18(12). PMID: 25454512 Free PMC article.
Design and characterization of chemical space networks for different compound data sets. Magdalena Zwierzyna, Martin Vogt, Gerald M Maggiora, Jürgen Bajorath. J Comput Aided Mol Des, 2014 Dec 04; 29(2). PMID: 25465052
Trophic coherence determines food-web stability. Samuel Johnson, Virginia Domínguez-García, Luca Donetti, Miguel A Muñoz. Proc Natl Acad Sci U S A, 2014 Dec 04; 111(50). PMID: 25468963 Free PMC article.
Modules, networks and systems medicine for understanding disease and aiding diagnosis. Mika Gustafsson, Colm E Nestor, +14 authors, Mikael Benson. less Genome Med, 2014 Dec 05; 6(10). PMID: 25473422 Free PMC article. Highly Cited.
Relational diversity promotes cooperation in prisoner's dilemma games. Bo Xu, Jianwei Wang, Ruipu Deng, Miao Li. PLoS One, 2014 Dec 05; 9(12). PMID: 25474354 Free PMC article.
Promoting cold-start items in recommender systems. Jin-Hu Liu, Tao Zhou, +3 authors, Zi-Ke Zhang, Zimo Yang, Chuang Liu, Wei-Min Li. less PLoS One, 2014 Dec 06; 9(12). PMID: 25479013 Free PMC article.
From Physics to Pharmacology? Richard J Allen, Timothy C Elston. Rep Prog Phys, 2011 Jan 01; 74(1). PMID: 25484456 Free PMC article.
Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development. Maria Concetta Palumbo, Sara Zenoni, +5 authors, Paola Paci. less Plant Cell, 2014 Dec 11; 26(12). PMID: 25490918 Free PMC article.
Probabilistic generation of random networks taking into account information on motifs occurrence. Frederic Y Bois, Ghislaine Gayraud. J Comput Biol, 2014 Dec 11; 22(1). PMID: 25493547 Free PMC article.
Gene network inference using continuous time Bayesian networks: a comparative study and application to Th17 cell differentiation. Enzo Acerbi, Teresa Zelante, Vipin Narang, Fabio Stella. BMC Bioinformatics, 2014 Dec 17; 15. PMID: 25495206 Free PMC article.
Effects of reciprocity on random walks in weighted networks. Zhongzhi Zhang, Huan Li, Yibin Sheng. Sci Rep, 2014 Dec 17; 4. PMID: 25500907 Free PMC article.
Construction and analyses of human large-scale tissue specific networks. Wei Liu, Jianying Wang, Tengjiao Wang, Hongwei Xie. PLoS One, 2014 Dec 17; 9(12). PMID: 25513809 Free PMC article.
Lewis Carroll's Doublets net of English words: network heterogeneity in a complex system. Hsieh Fushing, Chen Chen, Yin-Chen Hsieh, Patrick Farrell. PLoS One, 2014 Dec 18; 9(12). PMID: 25517974 Free PMC article.
Scaling in complex systems: a link between the dynamics of networks and growing interfaces. A Brú, E Alós, J C Nuño, M Fernández de Dios. Sci Rep, 2014 Dec 19; 4. PMID: 25518729 Free PMC article.
How central are clients in sexual networks created by commercial sex? Chih-Sheng Hsieh, Jaromír Kovářík, Trevon Logan. Sci Rep, 2014 Dec 19; 4. PMID: 25519182 Free PMC article.
Emergence of disassortative mixing from pruning nodes in growing scale-free networks. Sheng-Jun Wang, Zhen Wang, Tao Jin, Stefano Boccaletti. Sci Rep, 2014 Dec 19; 4. PMID: 25520244 Free PMC article.
Entropy, complexity, and Markov diagrams for random walk cancer models. Paul K Newton, Jeremy Mason, +4 authors, Peter Kuhn. less Sci Rep, 2014 Dec 20; 4. PMID: 25523357 Free PMC article.
Bidirectional selection between two classes in complex social networks. Bin Zhou, Zhe He, +2 authors, Luo-Luo Jiang, Nian-Xin Wang, Bing-Hong Wang. less Sci Rep, 2014 Dec 20; 4. PMID: 25524835 Free PMC article.
Label propagation with α-degree neighborhood impact for network community detection. Heli Sun, Jianbin Huang, +3 authors, Xiang Zhong, Ke Liu, Jianhua Zou, Qinbao Song. less Comput Intell Neurosci, 2014 Dec 20; 2014. PMID: 25525425 Free PMC article.
Using synchronous Boolean networks to model several phenomena of collective behavior. Stepan Kochemazov, Alexander Semenov. PLoS One, 2014 Dec 20; 9(12). PMID: 25526612 Free PMC article.
Measuring the effectiveness of scientific gatekeeping. Kyle Siler, Kirby Lee, Lisa Bero. Proc Natl Acad Sci U S A, 2014 Dec 24; 112(2). PMID: 25535380 Free PMC article.
Network Ecology and Adolescent Social Structure. Daniel A McFarland, James Moody, +2 authors, David Diehl, Jeffrey A Smith, Reuben J Thomas. less Am Sociol Rev, 2014 Dec 24; 79(6). PMID: 25535409 Free PMC article.
Network morphospace. Andrea Avena-Koenigsberger, Joaquín Goñi, Ricard Solé, Olaf Sporns. J R Soc Interface, 2014 Dec 30; 12(103). PMID: 25540237 Free PMC article. Review.
Conformity enhances network reciprocity in evolutionary social dilemmas. Attila Szolnoki, Matjaž Perc. J R Soc Interface, 2014 Dec 30; 12(103). PMID: 25540242 Free PMC article.
Detection of the elite structure in a virtual multiplex social system by means of a generalised K-core. Bernat Corominas-Murtra, Benedikt Fuchs, Stefan Thurner. PLoS One, 2014 Dec 30; 9(12). PMID: 25541957 Free PMC article.
A growth model for directed complex networks with power-law shape in the out-degree distribution. J Esquivel-Gómez, E Stevens-Navarro, U Pineda-Rico, J Acosta-Elias. Sci Rep, 2015 Jan 09; 5. PMID: 25567141 Free PMC article.
Applications of graph theory to landscape genetics. Colin J Garroway, Jeff Bowman, Denis Carr, Paul J Wilson. Evol Appl, 2008 Nov 01; 1(4). PMID: 25567802 Free PMC article.
Evolution and emergence of infectious diseases in theoretical and real-world networks. Gabriel E Leventhal, Alison L Hill, Martin A Nowak, Sebastian Bonhoeffer. Nat Commun, 2015 Jan 17; 6. PMID: 25592476 Free PMC article.
When advocacy obscures accuracy online: digital pandemics of public health misinformation through an antifluoride case study. Brittany Seymour, Rebekah Getman, +2 authors, Avinash Saraf, Lily H Zhang, Elsbeth Kalenderian. less Am J Public Health, 2015 Jan 21; 105(3). PMID: 25602893 Free PMC article.
Compressive Network Analysis. Xiaoye Jiang, Yuan Yao, Han Liu, Leonidas Guibas. IEEE Trans Automat Contr, 2015 Jan 27; 59(11). PMID: 25620806 Free PMC article.
Learning Graphical Models With Hubs. Kean Ming Tan, Palma London, +3 authors, Daniela Witten. less J Mach Learn Res, 2015 Jan 27; 15. PMID: 25620891 Free PMC article.
Graph Estimation From Multi-Attribute Data. Mladen Kolar, Han Liu, Eric P Xing. J Mach Learn Res, 2015 Jan 27; 15(May). PMID: 25620892 Free PMC article.
Network representations of immune system complexity. Naeha Subramanian, Parizad Torabi-Parizi, +2 authors, Bhaskar Dutta. less Wiley Interdiscip Rev Syst Biol Med, 2015 Jan 28; 7(1). PMID: 25625853 Free PMC article. Review.
Analysis of candidate genes has proposed the role of y chromosome in human prostate cancer. Pegah Khosravi, Javad Zahiri, +4 authors, Bahram Goliaei. less Iran J Cancer Prev, 2015 Jan 30; 7(4). PMID: 25628841 Free PMC article.
Evolution of individual versus social learning on social networks. Kohei Tamura, Yutaka Kobayashi, Yasuo Ihara. J R Soc Interface, 2015 Jan 30; 12(104). PMID: 25631568 Free PMC article.
Micro-macro analysis of complex networks. Massimo Marchiori, Lino Possamai. PLoS One, 2015 Jan 31; 10(1). PMID: 25635812 Free PMC article.
Emergence of super cooperation of prisoner's dilemma games on scale-free networks. Angsheng Li, Xi Yong. PLoS One, 2015 Feb 03; 10(2). PMID: 25643279 Free PMC article.
Network analysis suggests a potentially 'evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities. Zhanshan Sam Ma, Qiong Guan, +3 authors, Larry J Forney. less Sci Rep, 2015 Feb 06; 5. PMID: 25651890 Free PMC article.
Toward link predictability of complex networks. Linyuan Lü, Liming Pan, +2 authors, Tao Zhou, Yi-Cheng Zhang, H Eugene Stanley. less Proc Natl Acad Sci U S A, 2015 Feb 11; 112(8). PMID: 25659742 Free PMC article.
Mesoscopic segregation of excitation and inhibition in a brain network model. Daniel Malagarriga, Alessandro E P Villa, Jordi Garcia-Ojalvo, Antonio J Pons. PLoS Comput Biol, 2015 Feb 12; 11(2). PMID: 25671573 Free PMC article.
Intrinsic dynamics induce global symmetry in network controllability. Chen Zhao, Wen-Xu Wang, Yang-Yu Liu, Jean-Jacques Slotine. Sci Rep, 2015 Feb 13; 5. PMID: 25672476 Free PMC article.
A statistically inferred microRNA network identifies breast cancer target miR-940 as an actin cytoskeleton regulator. Ricky Bhajun, Laurent Guyon, +7 authors, Xavier Gidrol. less Sci Rep, 2015 Feb 13; 5. PMID: 25673565 Free PMC article.
On the evolution of dispersal via heterogeneity in spatial connectivity. Renato Henriques-Silva, Frédéric Boivin, +2 authors, Vincent Calcagno, Mark C Urban, Pedro R Peres-Neto. less Proc Biol Sci, 2015 Feb 13; 282(1803). PMID: 25673685 Free PMC article.
Enhancing robustness of coupled networks under targeted recoveries. Maoguo Gong, Lijia Ma, Qing Cai, Licheng Jiao. Sci Rep, 2015 Feb 14; 5. PMID: 25675980 Free PMC article.
Differential co-expression network centrality and machine learning feature selection for identifying susceptibility hubs in networks with scale-free structure. Caleb A Lareau, Bill C White, Ann L Oberg, Brett A McKinney. BioData Min, 2015 Feb 17; 8. PMID: 25685197 Free PMC article.
Network interventions on physical activity in an afterschool program: an agent-based social network study. Jun Zhang, David A Shoham, Eric Tesdahl, Sabina B Gesell. Am J Public Health, 2015 Feb 18; 105 Suppl 2. PMID: 25689202 Free PMC article.
The Scientometric Bubble Considered Harmful. Gonzalo Génova, Hernán Astudillo, Anabel Fraga. Sci Eng Ethics, 2015 Feb 19; 22(1). PMID: 25689931
Understanding the influence of all nodes in a network. Glenn Lawyer. Sci Rep, 2015 Mar 03; 5. PMID: 25727453 Free PMC article.
Computational modeling of drug response with applications to neuroscience. Ralf Herwig. Dialogues Clin Neurosci, 2015 Mar 04; 16(4). PMID: 25733952 Free PMC article. Review.
Inhibiting diffusion of complex contagions in social networks: theoretical and experimental results. Chris J Kuhlman, V S Anil Kumar, +2 authors, Madhav V Marathe, S S Ravi, Daniel J Rosenkrantz. less Data Min Knowl Discov, 2015 Mar 10; 29(2). PMID: 25750583 Free PMC article.
Alcohol use among adolescent youth: the role of friendship networks and family factors in multiple school studies. Cheng Wang, John R Hipp, +2 authors, Carter T Butts, Rupa Jose, Cynthia M Lakon. less PLoS One, 2015 Mar 11; 10(3). PMID: 25756364 Free PMC article.
How insurance affects altruistic provision in threshold public goods games. Jianlei Zhang, Chunyan Zhang, Ming Cao. Sci Rep, 2015 Mar 15; 5. PMID: 25765206 Free PMC article.
Multiplexity versus correlation: the role of local constraints in real multiplexes. V Gemmetto, D Garlaschelli. Sci Rep, 2015 Mar 15; 5. PMID: 25767040 Free PMC article.
K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores. Arnold I Emerson, Simeon Andrews, +2 authors, Ikhlak Ahmed, Thasni Ka Azis, Joel A Malek. less J Clin Bioinforma, 2015 Mar 15; 5. PMID: 25767694 Free PMC article.
The network of antigen-antibody reactions in adult women with breast cancer or benign breast pathology or without breast pathology. Tania Romo-González, Marcela Esquivel-Velázquez, +5 authors, Carlos Larralde. less PLoS One, 2015 Mar 18; 10(3). PMID: 25781932 Free PMC article.
Selectively-informed particle swarm optimization. Yang Gao, Wenbo Du, Gang Yan. Sci Rep, 2015 Mar 20; 5. PMID: 25787315 Free PMC article.
Designing a CTSA-Based Social Network Intervention to Foster Cross-Disciplinary Team Science. Raffaele Vacca, Christopher McCarty, Michael Conlon, David R Nelson. Clin Transl Sci, 2015 Mar 20; 8(4). PMID: 25788258 Free PMC article.
Dependency links can hinder the evolution of cooperation in the prisoner's dilemma game on lattices and networks. Xuwen Wang, Sen Nie, Binghong Wang. PLoS One, 2015 Mar 24; 10(3). PMID: 25798579 Free PMC article.
Epidemics in interconnected small-world networks. Meng Liu, Daqing Li, +3 authors, Feilong Wang. less PLoS One, 2015 Mar 24; 10(3). PMID: 25799143 Free PMC article.
Dynamics to equilibrium in network games: individual behavior and global response. Giulio Cimini, Claudio Castellano, Angel Sánchez. PLoS One, 2015 Mar 25; 10(3). PMID: 25803275 Free PMC article.
Temporal effects in trend prediction: identifying the most popular nodes in the future. Yanbo Zhou, An Zeng, Wei-Hong Wang. PLoS One, 2015 Mar 26; 10(3). PMID: 25806810 Free PMC article.
Proper evaluation of alignment-free network comparison methods. Ömer Nebil Yaveroğlu, Tijana Milenković, Nataša Pržulj. Bioinformatics, 2015 Mar 27; 31(16). PMID: 25810431 Free PMC article.
An agent-based epidemic simulation of social behaviors affecting HIV transmission among Taiwanese homosexuals. Chung-Yuan Huang. Comput Math Methods Med, 2015 Mar 31; 2015. PMID: 25815047 Free PMC article.
A stochastic model for detecting overlapping and hierarchical community structure. Xiaochun Cao, Xiao Wang, +2 authors, Di Jin, Xiaojie Guo, Xianchao Tang. less PLoS One, 2015 Mar 31; 10(3). PMID: 25822148 Free PMC article.
Network catastrophe: self-organized patterns reveal both the instability and the structure of complex networks. Hankyu Moon, Tsai-Ching Lu. Sci Rep, 2015 Mar 31; 5. PMID: 25822423 Free PMC article.
Signaling networks: information flow, computation, and decision making. Evren U Azeloglu, Ravi Iyengar. Cold Spring Harb Perspect Biol, 2015 Apr 03; 7(4). PMID: 25833842 Free PMC article. Review.
Emergence of rich-club topology and coordinated dynamics in development of hippocampal functional networks in vitro. Manuel S Schroeter, Paul Charlesworth, +2 authors, Manfred G Kitzbichler, Ole Paulsen, Edward T Bullmore. less J Neurosci, 2015 Apr 10; 35(14). PMID: 25855164 Free PMC article.
A stochastic agent-based model of pathogen propagation in dynamic multi-relational social networks. Bilal Khan, Kirk Dombrowski, Mohamed Saad. Simulation, 2015 Apr 11; 90(4). PMID: 25859056 Free PMC article.
Understanding scaling through history-dependent processes with collapsing sample space. Bernat Corominas-Murtra, Rudolf Hanel, Stefan Thurner. Proc Natl Acad Sci U S A, 2015 Apr 15; 112(17). PMID: 25870294 Free PMC article.
Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery. Jan Hoinka, Alexey Berezhnoy, +3 authors, Teresa M Przytycka. less Nucleic Acids Res, 2015 Apr 15; 43(12). PMID: 25870409 Free PMC article.
Synchronization properties of heterogeneous neuronal networks with mixed excitability type. Michael J Leone, Brandon N Schurter, +3 authors, Christian G Fink. less Phys Rev E Stat Nonlin Soft Matter Phys, 2015 Apr 15; 91(3). PMID: 25871163 Free PMC article.
Identification of important interacting proteins (IIPs) in Plasmodium falciparum using large-scale interaction network analysis and in-silico knock-out studies. Madhumita Bhattacharyya, Saikat Chakrabarti. Malar J, 2015 Apr 17; 14. PMID: 25879642 Free PMC article.
Precise calculation of a bond percolation transition and survival rates of nodes in a complex network. Hirokazu Kawamoto, Hideki Takayasu, Henrik Jeldtoft Jensen, Misako Takayasu. PLoS One, 2015 Apr 18; 10(4). PMID: 25885791 Free PMC article.
The effect of selection bias in studies of fads and fashions. Jerker Denrell, Balázs Kovács. PLoS One, 2015 Apr 18; 10(4). PMID: 25886158 Free PMC article.
Beyond clustering: mean-field dynamics on networks with arbitrary subgraph composition. Martin Ritchie, Luc Berthouze, Istvan Z Kiss. J Math Biol, 2015 Apr 22; 72(1-2). PMID: 25893260 Free PMC article.
Examining assortativity in the mental lexicon: Evidence from word associations. Bram Van Rensbergen, Gert Storms, Simon De Deyne. Psychon Bull Rev, 2015 Apr 22; 22(6). PMID: 25893712
Generating attributed networks with communities. Christine Largeron, Pierre-Nicolas Mougel, Reihaneh Rabbany, Osmar R Zaïane. PLoS One, 2015 Apr 22; 10(3). PMID: 25893834 Free PMC article.
Robustness of oscillatory behavior in correlated networks. Takeyuki Sasai, Kai Morino, +2 authors, Gouhei Tanaka, Juan A Almendral, Kazuyuki Aihara. less PLoS One, 2015 Apr 22; 10(4). PMID: 25894574 Free PMC article.
On the divide between animate and inanimate. Arto Annila, Erkki Kolehmainen. J Syst Chem, 2015 Apr 24; 6(1). PMID: 25904989 Free PMC article.
Modularity in the evolution of yeast protein interaction network. Soichi Ogishima, Hiroshi Tanaka, Jun Nakaya. Bioinformation, 2015 Apr 29; 11(3). PMID: 25914446 Free PMC article.
Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint. Steven E Massey. Life (Basel), 2015 Apr 29; 5(2). PMID: 25919033 Free PMC article.
Increased signaling entropy in cancer requires the scale-free property of protein interaction networks. Andrew E Teschendorff, Christopher R S Banerji, +2 authors, Simone Severini, Reimer Kuehn, Peter Sollich. less Sci Rep, 2015 Apr 29; 5. PMID: 25919796 Free PMC article.
Emergence of soft communities from geometric preferential attachment. Konstantin Zuev, Marián Boguñá, Ginestra Bianconi, Dmitri Krioukov. Sci Rep, 2015 Apr 30; 5. PMID: 25923110 Free PMC article.
Comparative Analysis of Prostate Cancer Gene Regulatory Networks via Hub Type Variation. Pegah Khosravi, Vahid H Gazestani, +3 authors, Bahram Goliaei. less Avicenna J Med Biotechnol, 2015 May 01; 7(1). PMID: 25926947 Free PMC article.
Using Graph Components Derived from an Associative Concept Dictionary to Predict fMRI Neural Activation Patterns that Represent the Meaning of Nouns. Hiroyuki Akama, Maki Miyake, Jaeyoung Jung, Brian Murphy. PLoS One, 2015 May 01; 10(4). PMID: 25928363 Free PMC article.
Estimating Diffusion Network Structures: Recovery Conditions, Sample Complexity & Soft-thresholding Algorithm. Hadi Daneshmand, Manuel Gomez-Rodriguez, Le Song, Bernhard Schölkopf. Proc Int Conf Mach Learn, 2015 May 02; 2014. PMID: 25932466 Free PMC article.
Detecting the influence of spreading in social networks with excitable sensor networks. Sen Pei, Shaoting Tang, Zhiming Zheng. PLoS One, 2015 May 08; 10(5). PMID: 25950181 Free PMC article.
Optimal search strategies on complex multi-linked networks. Francesca Di Patti, Duccio Fanelli, Francesco Piazza. Sci Rep, 2015 May 08; 5. PMID: 25950716 Free PMC article.
Sparse and compositionally robust inference of microbial ecological networks. Zachary D Kurtz, Christian L Müller, +3 authors, Richard A Bonneau. less PLoS Comput Biol, 2015 May 08; 11(5). PMID: 25950956 Free PMC article. Highly Cited.
Networks in Coronary Heart Disease Genetics As a Step towards Systems Epidemiology. Fotios Drenos, Enzo Grossi, Massimo Buscema, Steve E Humphries. PLoS One, 2015 May 08; 10(5). PMID: 25951190 Free PMC article.
Social network targeting to maximise population behaviour change: a cluster randomised controlled trial. David A Kim, Alison R Hwong, +4 authors, Nicholas A Christakis. less Lancet, 2015 May 09; 386(9989). PMID: 25952354 Free PMC article. Highly Cited.
Tail-scope: Using friends to estimate heavy tails of degree distributions in large-scale complex networks. Young-Ho Eom, Hang-Hyun Jo. Sci Rep, 2015 May 12; 5. PMID: 25959097 Free PMC article.
Representing Micro-Macro Linkages by Actor-Based Dynamic Network Models. Tom A B Snijders, Christian E G Steglich. Sociol Methods Res, 2015 May 12; 44(2). PMID: 25960578 Free PMC article.
A natural experiment of social network formation and dynamics. Tuan Q Phan, Edoardo M Airoldi. Proc Natl Acad Sci U S A, 2015 May 13; 112(21). PMID: 25964337 Free PMC article.
Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data. Ricardo de Matos Simoes, Sabine Dalleau, Kate E Williamson, Frank Emmert-Streib. BMC Syst Biol, 2015 May 15; 9. PMID: 25971253 Free PMC article.
Evolutionarily conserved network properties of intrinsically disordered proteins. Nivedita Rangarajan, Prakash Kulkarni, Sridhar Hannenhalli. PLoS One, 2015 May 15; 10(5). PMID: 25974317 Free PMC article.
Topological effects of network structure on long-term social network dynamics in a wild mammal. Amiyaal Ilany, Andrew S Booms, Kay E Holekamp. Ecol Lett, 2015 May 16; 18(7). PMID: 25975663 Free PMC article.
Hierarchical decomposition of dynamically evolving regulatory networks. Ahmet Ay, Dihong Gong, Tamer Kahveci. BMC Bioinformatics, 2015 May 16; 16. PMID: 25976669 Free PMC article.
The role of the organization structure in the diffusion of innovations. Carlos Sáenz-Royo, Carlos Gracia-Lázaro, Yamir Moreno. PLoS One, 2015 May 16; 10(5). PMID: 25978360 Free PMC article.
A BAYESIAN NONPARAMETRIC MIXTURE MODEL FOR SELECTING GENES AND GENE SUBNETWORKS. Yize Zhao, Jian Kang, Tianwei Yu. Ann Appl Stat, 2015 May 20; 8(2). PMID: 25984253 Free PMC article.
Emergent complex network geometry. Zhihao Wu, Giulia Menichetti, Christoph Rahmede, Ginestra Bianconi. Sci Rep, 2015 May 20; 5. PMID: 25985280 Free PMC article.
Ongoing Processes in a Fitness Network Model under Restricted Resources. Takayuki Niizato, Yukio-Pegio Gunji. PLoS One, 2015 May 20; 10(5). PMID: 25985301 Free PMC article.
Digital Ecology: Coexistence and Domination among Interacting Networks. Kaj-Kolja Kleineberg, Marián Boguñá. Sci Rep, 2015 May 20; 5. PMID: 25988318 Free PMC article.
Metapopulation persistence in random fragmented landscapes. Jacopo Grilli, György Barabás, Stefano Allesina. PLoS Comput Biol, 2015 May 21; 11(5). PMID: 25993004 Free PMC article.
RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat -Omics Data. Jonathan Vincent, Pierre Martre, +4 authors, Marie Pailloux. less PLoS One, 2015 May 21; 10(5). PMID: 25993562 Free PMC article.
Community structure analysis of transcriptional networks reveals distinct molecular pathways for early- and late-onset temporal lobe epilepsy with childhood febrile seizures. Carlos Alberto Moreira-Filho, Silvia Yumi Bando, +6 authors, Hung-Tzu Wen. less PLoS One, 2015 May 27; 10(5). PMID: 26011637 Free PMC article.
Defining and identifying Sleeping Beauties in science. Qing Ke, Emilio Ferrara, Filippo Radicchi, Alessandro Flammini. Proc Natl Acad Sci U S A, 2015 May 28; 112(24). PMID: 26015563 Free PMC article.
Transnational corporations as 'keystone actors' in marine ecosystems. Henrik Österblom, Jean-Baptiste Jouffray, +4 authors, Johan Rockström. less PLoS One, 2015 May 29; 10(5). PMID: 26017777 Free PMC article.
Experimental and computational analysis of a large protein network that controls fat storage reveals the design principles of a signaling network. Bader Al-Anzi, Patrick Arpp, +3 authors, Kai Zinn. less PLoS Comput Biol, 2015 May 29; 11(5). PMID: 26020510 Free PMC article.
Optimal learning paths in information networks. G C Rodi, V Loreto, V D P Servedio, F Tria. Sci Rep, 2015 Jun 02; 5. PMID: 26030508 Free PMC article.
Self-organized criticality in cortical assemblies occurs in concurrent scale-free and small-world networks. Paolo Massobrio, Valentina Pasquale, Sergio Martinoia. Sci Rep, 2015 Jun 02; 5. PMID: 26030608 Free PMC article.
A null model for Pearson coexpression networks. Andrea Gobbi, Giuseppe Jurman. PLoS One, 2015 Jun 02; 10(6). PMID: 26030917 Free PMC article.
A novel characterization of amalgamated networks in natural systems. Victor J Barranca, Douglas Zhou, David Cai. Sci Rep, 2015 Jun 04; 5. PMID: 26035066 Free PMC article.
Topology analysis of social networks extracted from literature. Michaël C Waumans, Thibaut Nicodème, Hugues Bersini. PLoS One, 2015 Jun 04; 10(6). PMID: 26039072 Free PMC article.
A double-edged sword: Benefits and pitfalls of heterogeneous punishment in evolutionary inspection games. Matjaž Perc, Attila Szolnoki. Sci Rep, 2015 Jun 06; 5. PMID: 26046673 Free PMC article.
Energy Spectral Behaviors of Communication Networks of Open-Source Communities. Jianmei Yang, Huijie Yang, +2 authors, Hao Liao, Jiangtao Wang, Jinqun Zeng. less PLoS One, 2015 Jun 06; 10(6). PMID: 26047331 Free PMC article.
Dynamics of the discovery process of protein-protein interactions from low content studies. Zichen Wang, Neil R Clark, Avi Ma'ayan. BMC Syst Biol, 2015 Jun 07; 9. PMID: 26048415 Free PMC article.
Comparison of bioactive chemical space networks generated using substructure- and fingerprint-based measures of molecular similarity. Bijun Zhang, Martin Vogt, Gerald M Maggiora, Jürgen Bajorath. J Comput Aided Mol Des, 2015 Jun 08; 29(7). PMID: 26049785
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells. Eugenia Galeota, Caius Gravila, +2 authors, Gianni Cesareni. less BMC Syst Biol, 2015 Jun 09; 9 Suppl 3. PMID: 26050708 Free PMC article.
Distributions of Autocorrelated First-Order Kinetic Outcomes: Illness Severity. James D Englehardt. PLoS One, 2015 Jun 11; 10(6). PMID: 26061263 Free PMC article.
Modelling group navigation: transitive social structures improve navigational performance. Andrea Flack, Dora Biro, Tim Guilford, Robin Freeman. J R Soc Interface, 2015 Jun 13; 12(108). PMID: 26063820 Free PMC article.
Understanding Zipf's law of word frequencies through sample-space collapse in sentence formation. Stefan Thurner, Rudolf Hanel, Bo Liu, Bernat Corominas-Murtra. J R Soc Interface, 2015 Jun 13; 12(108). PMID: 26063827 Free PMC article.
The importance of delineating networks by activity type in bottlenose dolphins (Tursiops truncatus) in Cedar Key, Florida. Stefanie Gazda, Swami Iyer, +2 authors, Timothy Killingback, Richard Connor, Solange Brault. less R Soc Open Sci, 2015 Jun 13; 2(3). PMID: 26064611 Free PMC article.
Measuring multiple evolution mechanisms of complex networks. Qian-Ming Zhang, Xiao-Ke Xu, Yu-Xiao Zhu, Tao Zhou. Sci Rep, 2015 Jun 13; 5. PMID: 26065382 Free PMC article.
An Integrative Thrombosis Network: Visualization and Topological Analysis. Xiangjun Kong, Wenxia Zhou, +3 authors, Yuanjia Hu. less Evid Based Complement Alternat Med, 2015 Jun 16; 2015. PMID: 26074988 Free PMC article.
Power laws and fragility in flow networks. Jesse Shore, Catherine J Chu, Matt T Bianchi. Soc Networks, 2013 Jan 01; 35(1). PMID: 26082568 Free PMC article.
An Analysis of the Matching Hypothesis in Networks. Tao Jia, Robert F Spivey, Boleslaw Szymanski, Gyorgy Korniss. PLoS One, 2015 Jun 18; 10(6). PMID: 26083728 Free PMC article.
The Cooperative Landscape of Multinational Clinical Trials. David Hsiehchen, Magdalena Espinoza, Antony Hsieh. PLoS One, 2015 Jun 24; 10(6). PMID: 26103155 Free PMC article.
Modeling the Origin and Possible Control of the Wealth Inequality Surge. Yonatan Berman, Yoash Shapira, Eshel Ben-Jacob. PLoS One, 2015 Jun 25; 10(6). PMID: 26107388 Free PMC article.
Graphical Models for Ordinal Data. Jian Guo, Elizaveta Levina, George Michailidis, Ji Zhu. J Comput Graph Stat, 2015 Jun 30; 24(1). PMID: 26120267 Free PMC article.
T-cell exhaustion, co-stimulation and clinical outcome in autoimmunity and infection. Eoin F McKinney, James C Lee, +2 authors, David R W Jayne, Paul A Lyons, Kenneth G C Smith. less Nature, 2015 Jul 01; 523(7562). PMID: 26123020 Free PMC article. Highly Cited.
DINGO: differential network analysis in genomics. Min Jin Ha, Veerabhadran Baladandayuthapani, Kim-Anh Do. Bioinformatics, 2015 Jul 08; 31(21). PMID: 26148744 Free PMC article.
Using Benford's law to investigate Natural Hazard dataset homogeneity. Renaud Joannes-Boyau, Thomas Bodin, +2 authors, Anja Scheffers, Malcolm Sambridge, Simon Matthias May. less Sci Rep, 2015 Jul 15; 5. PMID: 26156060 Free PMC article.
Role of physical and mental training in brain network configuration. Philip P Foster. Front Aging Neurosci, 2015 Jul 15; 7. PMID: 26157387 Free PMC article. Review.
Network analysis of mesoscale optical recordings to assess regional, functional connectivity. Diana H Lim, Jeffrey M LeDue, Timothy H Murphy. Neurophotonics, 2015 Jul 15; 2(4). PMID: 26158019 Free PMC article.
PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property. Hua Li, Pan Tong, +4 authors, Shoudan Liang. less PLoS One, 2015 Jul 15; 10(7). PMID: 26158709 Free PMC article.
Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph. Jinpeng Chen, Josiah Poon, +2 authors, Simon K Poon, Ling Xu, Daniel M Y Sze. less Evid Based Complement Alternat Med, 2015 Jul 15; 2015. PMID: 26167191 Free PMC article.
Emergence of Slow-Switching Assemblies in Structured Neuronal Networks. Michael T Schaub, Yazan N Billeh, +2 authors, Costas A Anastassiou, Christof Koch, Mauricio Barahona. less PLoS Comput Biol, 2015 Jul 16; 11(7). PMID: 26176664 Free PMC article.
Generalized Open Quantum Walks on Apollonian Networks. Łukasz Pawela, Piotr Gawron, Jarosław Adam Miszczak, Przemysław Sadowski. PLoS One, 2015 Jul 16; 10(7). PMID: 26177452 Free PMC article.
The BioPlex Network: A Systematic Exploration of the Human Interactome. Edward L Huttlin, Lily Ting, +26 authors, Steven P Gygi. less Cell, 2015 Jul 18; 162(2). PMID: 26186194 Free PMC article. Highly Cited.
Building a Social Network One Choice at a Time. Jordan W Suchow. PLoS One, 2015 Jul 18; 10(7). PMID: 26186607 Free PMC article.
Network analysis of immunotherapy-induced regressing tumours identifies novel synergistic drug combinations. W Joost Lesterhuis, Catherine Rinaldi, +8 authors, Richard A Lake. less Sci Rep, 2015 Jul 22; 5. PMID: 26193793 Free PMC article.
Two universal physical principles shape the power-law statistics of real-world networks. Tom Lorimer, Florian Gomez, Ruedi Stoop. Sci Rep, 2015 Jul 24; 5. PMID: 26202858 Free PMC article.
Efficient maximum likelihood parameterization of continuous-time Markov processes. Robert T McGibbon, Vijay S Pande. J Chem Phys, 2015 Jul 24; 143(3). PMID: 26203016 Free PMC article.
Mapping Systemic Risk: Critical Degree and Failures Distribution in Financial Networks. Matteo Smerlak, Brady Stoll, Agam Gupta, James S Magdanz. PLoS One, 2015 Jul 25; 10(7). PMID: 26207631 Free PMC article.
Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks. Saket Navlakha, Alison L Barth, Ziv Bar-Joseph. PLoS Comput Biol, 2015 Jul 29; 11(7). PMID: 26217933 Free PMC article.
The Impact of the Network Topology on the Viral Prevalence: A Node-Based Approach. Lu-Xing Yang, Moez Draief, Xiaofan Yang. PLoS One, 2015 Jul 30; 10(7). PMID: 26222539 Free PMC article.
High-Resolution Functional Connectivity Density: Hub Locations, Sensitivity, Specificity, Reproducibility, and Reliability. Dardo Tomasi, Ehsan Shokri-Kojori, Nora D Volkow. Cereb Cortex, 2015 Aug 01; 26(7). PMID: 26223259 Free PMC article.
Ant trophallactic networks: simultaneous measurement of interaction patterns and food dissemination. Efrat Greenwald, Enrico Segre, Ofer Feinerman. Sci Rep, 2015 Aug 01; 5. PMID: 26224025 Free PMC article.
Heritability of the network architecture of intrinsic brain functional connectivity. Benjamin Sinclair, Narelle K Hansell, +6 authors, Katie L McMahon. less Neuroimage, 2015 Aug 01; 121. PMID: 26226088 Free PMC article.
Post Disaster Governance, Complexity and Network Theory: Evidence from Aceh, Indonesia After the Indian Ocean Tsunami 2004. Jonatan A Lassa. PLoS Curr, 2015 Aug 04; 7. PMID: 26236562 Free PMC article.
Functional Magnetic Resonance Imaging Methods. Jingyuan E Chen, Gary H Glover. Neuropsychol Rev, 2015 Aug 08; 25(3). PMID: 26248581 Free PMC article. Review.
Zipf's law holds for phrases, not words. Jake Ryland Williams, Paul R Lessard, +4 authors, Peter Sheridan Dodds. less Sci Rep, 2015 Aug 12; 5. PMID: 26259699 Free PMC article.
Effects of Edge Directions on the Structural Controllability of Complex Networks. Yandong Xiao, Songyang Lao, +2 authors, Lvlin Hou, Michael Small, Liang Bai. less PLoS One, 2015 Aug 19; 10(8). PMID: 26281042 Free PMC article.
Cluster imaging of multi-brain networks (CIMBN): a general framework for hyperscanning and modeling a group of interacting brains. Lian Duan, Rui-Na Dai, +3 authors, Xiang Xiao, Pei-Pei Sun, Zheng Li, Chao-Zhe Zhu. less Front Neurosci, 2015 Aug 19; 9. PMID: 26283906 Free PMC article.
Discovery of Power-Law Growth in the Self-Renewal of Heterogeneous Glioma Stem Cell Populations. Michiya Sugimori, Yumiko Hayakawa, +10 authors, Satoshi Kuroda. less PLoS One, 2015 Aug 19; 10(8). PMID: 26284929 Free PMC article.
Disease network of mental disorders in Korea. Myoungje Choi, Dong-Woo Lee, +2 authors, Maeng Je Cho, Jee Eun Park, Minsook Gim. less Soc Psychiatry Psychiatr Epidemiol, 2015 Aug 20; 50(12). PMID: 26286617
Prediction of Causal Candidate Genes in Coronary Artery Disease Loci. Ingrid Brænne, Mete Civelek, +20 authors, Leducq Consortium CAD Genomics‡. less Arterioscler Thromb Vasc Biol, 2015 Aug 22; 35(10). PMID: 26293461 Free PMC article.
A Complex Network Approach to Distributional Semantic Models. Akira Utsumi. PLoS One, 2015 Aug 22; 10(8). PMID: 26295940 Free PMC article.
Dynamical properties of gene regulatory networks involved in long-term potentiation. Gonzalo S Nido, Margaret M Ryan, Lubica Benuskova, Joanna M Williams. Front Mol Neurosci, 2015 Aug 25; 8. PMID: 26300724 Free PMC article.
Benford's Law Applies to Online Social Networks. Jennifer Golbeck. PLoS One, 2015 Aug 27; 10(8). PMID: 26308716 Free PMC article.
Semi-Metric Topology of the Human Connectome: Sensitivity and Specificity to Autism and Major Depressive Disorder. Tiago Simas, Shayanti Chattopadhyay, +13 authors, John Suckling. less PLoS One, 2015 Aug 27; 10(8). PMID: 26308854 Free PMC article.
Statistical Patterns in Movie Rating Behavior. Marlon Ramos, Angelo M Calvão, Celia Anteneodo. PLoS One, 2015 Sep 01; 10(8). PMID: 26322899 Free PMC article.
Finding Influential Spreaders from Human Activity beyond Network Location. Byungjoon Min, Fredrik Liljeros, Hernán A Makse. PLoS One, 2015 Sep 01; 10(8). PMID: 26323015 Free PMC article.
Making Large-Scale Networks from fMRI Data. Verena D Schmittmann, Sara Jahfari, +2 authors, Denny Borsboom, Alexander O Savi, Lourens J Waldorp. less PLoS One, 2015 Sep 02; 10(9). PMID: 26325185 Free PMC article.
Quantifying noise in mass spectrometry and yeast two-hybrid protein interaction detection experiments. A Annibale, A C C Coolen, N Planell-Morell. J R Soc Interface, 2015 Sep 04; 12(110). PMID: 26333811 Free PMC article.
Competition between Homophily and Information Entropy Maximization in Social Networks. Jichang Zhao, Xiao Liang, Ke Xu. PLoS One, 2015 Sep 04; 10(9). PMID: 26334994 Free PMC article.
An information-theoretic model for link prediction in complex networks. Boyao Zhu, Yongxiang Xia. Sci Rep, 2015 Sep 04; 5. PMID: 26335758 Free PMC article.
Screening key genes associated with congenital heart defects in Down syndrome based on differential expression network. Shan Yu, Huani Yi, Zhimin Wang, Juan Dong. Int J Clin Exp Pathol, 2015 Sep 05; 8(7). PMID: 26339408 Free PMC article.
Module Based Differential Coexpression Analysis Method for Type 2 Diabetes. Lin Yuan, Chun-Hou Zheng, Jun-Feng Xia, De-Shuang Huang. Biomed Res Int, 2015 Sep 05; 2015. PMID: 26339648 Free PMC article.
Characteristics of Venture Capital Network and Its Correlation with Regional Economy: Evidence from China. Yonghong Jin, Qi Zhang, Lifei Shan, Sai-Ping Li. PLoS One, 2015 Sep 05; 10(9). PMID: 26340555 Free PMC article.
Controlling infectious disease through the targeted manipulation of contact network structure. M Carolyn Gates, Mark E J Woolhouse. Epidemics, 2015 Sep 08; 12. PMID: 26342238 Free PMC article.
Ability paradox of cascading model based on betweenness. Jianwei Wang, Bo Xu, Yuedan Wu. Sci Rep, 2015 Sep 12; 5. PMID: 26353903 Free PMC article.
Complex Quantum Network Manifolds in Dimension d > 2 are Scale-Free. Ginestra Bianconi, Christoph Rahmede. Sci Rep, 2015 Sep 12; 5. PMID: 26356079 Free PMC article.
Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm. Lei Huang, Li Liao, Cathy H Wu. IEEE/ACM Trans Comput Biol Bioinform, 2015 Sep 12; 12(3). PMID: 26357273 Free PMC article.
PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks. Thong Pham, Paul Sheridan, Hidetoshi Shimodaira. PLoS One, 2015 Sep 18; 10(9). PMID: 26378457 Free PMC article.
The Mechanism Research of Qishen Yiqi Formula by Module-Network Analysis. Shichao Zheng, Yanling Zhang, Yanjiang Qiao. Evid Based Complement Alternat Med, 2015 Sep 18; 2015. PMID: 26379745 Free PMC article.
CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer. Simone Rubinacci, Alex Graudenzi, +4 authors, Marco Antoniotti. less Cancer Inform, 2015 Sep 19; 14(Suppl 4). PMID: 26380549 Free PMC article.
Predicting the Lifetime of Dynamic Networks Experiencing Persistent Random Attacks. Boris Podobnik, Tomislav Lipic, +3 authors, H Eugene Stanley. less Sci Rep, 2015 Sep 22; 5. PMID: 26387609 Free PMC article.
PenPC: A two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs. Min Jin Ha, Wei Sun, Jichun Xie. Biometrics, 2015 Sep 26; 72(1). PMID: 26406114 Free PMC article.
Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways. Karima Righetti, Joseph Ly Vu, +9 authors, Julia Buitink. less Plant Cell, 2015 Sep 28; 27(10). PMID: 26410298 Free PMC article.
On the Inference of Functional Circadian Networks Using Granger Causality. Arya Pourzanjani, Erik D Herzog, Linda R Petzold. PLoS One, 2015 Sep 29; 10(9). PMID: 26413748 Free PMC article.
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. Zhi-Ping Liu, Canglin Wu, Hongyu Miao, Hulin Wu. Database (Oxford), 2015 Oct 02; 2015. PMID: 26424082 Free PMC article. Highly Cited.
New genes drive the evolution of gene interaction networks in the human and mouse genomes. Wenyu Zhang, Patrick Landback, +2 authors, Andrea R Gschwend, Bairong Shen, Manyuan Long. less Genome Biol, 2015 Oct 02; 16. PMID: 26424194 Free PMC article.
Generative models of the human connectome. Richard F Betzel, Andrea Avena-Koenigsberger, +11 authors, Olaf Sporns. less Neuroimage, 2015 Oct 03; 124(Pt A). PMID: 26427642 Free PMC article. Highly Cited.
Networkcontrology. Adilson E Motter. Chaos, 2015 Oct 03; 25(9). PMID: 26428574 Free PMC article.
Understanding Cooperative Behavior Based on the Coevolution of Game Strategy and Link Weight. Keke Huang, Xiaoping Zheng, Zhijie Li, Yeqing Yang. Sci Rep, 2015 Oct 06; 5. PMID: 26435188 Free PMC article.
The network organization of protein interactions in the spliceosome is reproduced by the simple rules of food-web models. Mathias M Pires, Maurício Cantor, +3 authors, Patricia P Coltri. less Sci Rep, 2015 Oct 08; 5. PMID: 26443080 Free PMC article.
Structure Identification of Uncertain Complex Networks Based on Anticipatory Projective Synchronization. Liu Heng, Wang Xingyuan, Tan Guozhen. PLoS One, 2015 Oct 09; 10(10). PMID: 26444690 Free PMC article.
Abnormal Behavior in Cascading Dynamics with Node Weight. Jianwei Wang, Lin Cai, Bo Xu, Yuedan Wu. PLoS One, 2015 Oct 10; 10(10). PMID: 26451594 Free PMC article.
Lexical leverage: category knowledge boosts real-time novel word recognition in 2-year-olds. Arielle Borovsky, Erica M Ellis, Julia L Evans, Jeffrey L Elman. Dev Sci, 2016 Oct 25; 19(6). PMID: 26452444 Free PMC article.
Mechanisms Leading to Rhythm Cessation in the Respiratory PreBötzinger Complex Due to Piecewise Cumulative Neuronal Deletions Hanbing Song, John A Hayes, +2 authors, Nikolas C Vann, M Drew LaMar, Christopher A Del Negro. less eNeuro, 2015 Oct 16; 2(4). PMID: 26465010 Free PMC article.
A process of rumour scotching on finite populations. Guilherme Ferraz de Arruda, Elcio Lebensztayn, Francisco A Rodrigues, Pablo Martín Rodríguez. R Soc Open Sci, 2015 Oct 17; 2(9). PMID: 26473048 Free PMC article.
Homophyly/Kinship Model: Naturally Evolving Networks. Angsheng Li, Jiankou Li, +2 authors, Yicheng Pan, Xianchen Yin, Xi Yong. less Sci Rep, 2015 Oct 20; 5. PMID: 26478264 Free PMC article.
A Graph Algorithmic Approach to Separate Direct from Indirect Neural Interactions. Patricia Wollstadt, Ulrich Meyer, Michael Wibral. PLoS One, 2015 Oct 21; 10(10). PMID: 26479713 Free PMC article.
Effects of random rewiring on the degree correlation of scale-free networks. Jing Qu, Sheng-Jun Wang, Marko Jusup, Zhen Wang. Sci Rep, 2015 Oct 21; 5. PMID: 26482005 Free PMC article.
Understanding the Odour Spaces: A Step towards Solving Olfactory Stimulus-Percept Problem. Ritesh Kumar, Rishemjit Kaur, Benjamin Auffarth, Amol P Bhondekar. PLoS One, 2015 Oct 21; 10(10). PMID: 26484763 Free PMC article.
The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome. Geoffrey D Hannigan, Jacquelyn S Meisel, +6 authors, Elizabeth A Grice. less mBio, 2015 Oct 23; 6(5). PMID: 26489866 Free PMC article. Highly Cited.
The cost of attack in competing networks. B Podobnik, D Horvatic, +3 authors, T Lipic, M Perc, J M Buldú, H E Stanley. less J R Soc Interface, 2015 Oct 23; 12(112). PMID: 26490628 Free PMC article.
Local cost minimization in ant transport networks: from small-scale data to large-scale trade-offs. A Bottinelli, E van Wilgenburg, D J T Sumpter, T Latty. J R Soc Interface, 2015 Oct 23; 12(112). PMID: 26490633 Free PMC article.
Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases. P Kim, D-S Lee, B Kahng. Sci Rep, 2015 Oct 23; 5. PMID: 26490723 Free PMC article.
Cellular metabolic network analysis: discovering important reactions in Treponema pallidum. Xueying Chen, Min Zhao, Hong Qu. Biomed Res Int, 2015 Oct 27; 2015. PMID: 26495292 Free PMC article.
Quantifying the Role of Homophily in Human Cooperation Using Multiplex Evolutionary Game Theory. Alessandro Di Stefano, Marialisa Scatà, +4 authors, Salvatore Pagano. less PLoS One, 2015 Oct 27; 10(10). PMID: 26496351 Free PMC article.
Optimal Allocation of Node Capacity in Cascade-Robustness Networks. Zhen Chen, Jun Zhang, +2 authors, Wen-Bo Du, Oriol Lordan, Jiangjun Tang. less PLoS One, 2015 Oct 27; 10(10). PMID: 26496705 Free PMC article.
Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis. Nan Du, Kaiyu Jiang, +4 authors, James N Jarvis. less Genome Med, 2015 Oct 27; 7. PMID: 26497493 Free PMC article.
Thermodynamics of firms' growth. Eduardo Zambrano, Alberto Hernando, +2 authors, Angelo Plastino. less J R Soc Interface, 2015 Oct 30; 12(112). PMID: 26510828 Free PMC article.
Biological networks: the microscope of the twenty-first century? Frank Emmert-Streib, Matthias Dehmer. Front Genet, 2015 Nov 04; 6. PMID: 26528327 Free PMC article.
Transcriptional Network Growing Models Using Motif-Based Preferential Attachment. Ahmed F Abdelzaher, Ahmad F Al-Musawi, +2 authors, Preetam Ghosh, Michael L Mayo, Edward J Perkins. less Front Bioeng Biotechnol, 2015 Nov 04; 3. PMID: 26528473 Free PMC article. Review.
Ranking nodes in growing networks: When PageRank fails. Manuel Sebastian Mariani, Matúš Medo, Yi-Cheng Zhang. Sci Rep, 2015 Nov 11; 5. PMID: 26553630 Free PMC article.
Choosing experiments to accelerate collective discovery. Andrey Rzhetsky, Jacob G Foster, Ian T Foster, James A Evans. Proc Natl Acad Sci U S A, 2015 Nov 11; 112(47). PMID: 26554009 Free PMC article.
A Simulation Study Comparing Epidemic Dynamics on Exponential Random Graph and Edge-Triangle Configuration Type Contact Network Models. David A Rolls, Peng Wang, +2 authors, Emma McBryde, Philippa Pattison, Garry Robins. less PLoS One, 2015 Nov 12; 10(11). PMID: 26555701 Free PMC article.
Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations. Sonja Lehtinen, Jürg Bähler, Christine Orengo. Sci Rep, 2015 Nov 17; 5. PMID: 26568486 Free PMC article.
The Impact of Heterogeneous Thresholds on Social Contagion with Multiple Initiators. Panagiotis D Karampourniotis, Sameet Sreenivasan, Boleslaw K Szymanski, Gyorgy Korniss. PLoS One, 2015 Nov 17; 10(11). PMID: 26571486 Free PMC article.
Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network. Pengping Li, Yuebing Hu, +3 authors, Jiao Yi, Jie Li, Jie Yang, Jin Wang. less J Transl Med, 2015 Nov 19; 13. PMID: 26578390 Free PMC article.
Intraspecific differences in plant chemotype determine the structure of arthropod food webs. János Bálint, Sharon E Zytynska, +5 authors, Adalbert Balog. less Oecologia, 2015 Nov 20; 180(3). PMID: 26581421
Topological robustness analysis of protein interaction networks reveals key targets for overcoming chemotherapy resistance in glioma. Hátylas Azevedo, Carlos Alberto Moreira-Filho. Sci Rep, 2015 Nov 20; 5. PMID: 26582089 Free PMC article.
Evolution of the statistical distribution in a topological defect network. Fei Xue, Xueyun Wang, +3 authors, Sang-Wook Cheong. less Sci Rep, 2015 Nov 21; 5. PMID: 26586339 Free PMC article.
Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing. Long Ma, Xiao Han, +2 authors, Zhesi Shen, Wen-Xu Wang, Zengru Di. less PLoS One, 2015 Nov 21; 10(11). PMID: 26588832 Free PMC article.
A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels. Gianni Monaco, Sipko van Dam, +2 authors, João Pedro de Magalhães.

BioKDE: Biomedical Knowledge Discovery Engine

Abstract

Other Links