Review
. 2006 Jun;354(23).
doi: 10.1056/NEJMra042342.

Microarray analysis and tumor classification

John Quackenbush 1 
Affiliations
  • PMID: 16760446
  •     122 citations

No abstract available

Analysis of microarray experiments of gene expression profiling.
Adi L Tarca, Roberto Romero, Sorin Draghici.
Am J Obstet Gynecol, 2006 Aug 08; 195(2). PMID: 16890548    Free PMC article.
Genes involved in neuroendocrine tumor biology.
Eva Hofsli.
Pituitary, 2006 Sep 27; 9(3). PMID: 17001466
Review.
Microarray-based analysis of ventilator-induced lung injury.
Mark M Wurfel.
Proc Am Thorac Soc, 2007 Jan 05; 4(1). PMID: 17202295    Free PMC article.
Review.
[Diagnostics and staging of non-Hodgkin's lymphomas].
S Neumann, W Jung, L Trümper.
Internist (Berl), 2007 Mar 17; 48(4). PMID: 17364169
Review.
Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity.
Lao H Saal, Peter Johansson, +14 authors, Ramon Parsons.
Proc Natl Acad Sci U S A, 2007 Apr 25; 104(18). PMID: 17452630    Free PMC article.
Highly Cited.
Applications of quantitative pharmacodynamic effect markers in drug target identification and therapy development.
Robert M Straubinger, Wojciech Krzyzanski, Crystal M Francoforte, Jun Qu.
Anticancer Res, 2007 Jun 28; 27(3A). PMID: 17593615    Free PMC article.
Review.
A perspective on DNA microarrays in pathology research and practice.
Jonathan R Pollack.
Am J Pathol, 2007 Jun 30; 171(2). PMID: 17600117    Free PMC article.
Comprehensive expression profiling of tumor cell lines identifies molecular signatures of melanoma progression.
Byungwoo Ryu, Dave S Kim, Amena M Deluca, Rhoda M Alani.
PLoS One, 2007 Jul 06; 2(7). PMID: 17611626    Free PMC article.
Highly Cited.
Lesional gene expression profiling in cutaneous T-cell lymphoma reveals natural clusters associated with disease outcome.
Jessica Shin, Stefano Monti, +4 authors, Thomas S Kupper.
Blood, 2007 Jul 20; 110(8). PMID: 17638852    Free PMC article.
Type I collagen is overexpressed in medulloblastoma as a component of tumor microenvironment.
Yu Liang, Maximilian Diehn, +2 authors, Nalin Gupta.
J Neurooncol, 2007 Jul 27; 86(2). PMID: 17653508
Portraits of breast cancer progression.
Gul S Dalgin, Gabriela Alexe, +5 authors, Gyan Bhanot.
BMC Bioinformatics, 2007 Aug 09; 8. PMID: 17683614    Free PMC article.
Systems biology and cancer stem cells.
Nathan D Price, Greg Foltz, +2 authors, Qiang Tian.
J Cell Mol Med, 2007 Nov 23; 12(1). PMID: 18031300    Free PMC article.
Review.
A new method for class prediction based on signed-rank algorithms applied to Affymetrix microarray experiments.
Thierry Rème, Dirk Hose, +5 authors, Bernard Klein.
BMC Bioinformatics, 2008 Jan 15; 9. PMID: 18190711    Free PMC article.
Deregulation of keratinocyte differentiation and activation: a hallmark of venous ulcers.
Olivera Stojadinovic, Irena Pastar, +6 authors, Marjana Tomic-Canic.
J Cell Mol Med, 2008 Apr 01; 12(6B). PMID: 18373736    Free PMC article.
Protein networks in disease.
Trey Ideker, Roded Sharan.
Genome Res, 2008 Apr 03; 18(4). PMID: 18381899    Free PMC article.
Highly Cited. Review.
Gene expression profiling of non-small cell lung cancer.
Sunil Singhal, Daniel Miller, Suresh Ramalingam, Shi-Yong Sun.
Lung Cancer, 2008 Apr 29; 60(3). PMID: 18440087    Free PMC article.
Review.
Making a new technology work: the standardization and regulation of microarrays.
Susan Rogers, Alberto Cambrosio.
Yale J Biol Med, 2008 May 02; 80(4). PMID: 18449388    Free PMC article.
Review.
Linking molecular classification of hepatocellular carcinoma and personalized medicine: preliminary steps.
Augusto Villanueva, Sara Toffanin, Josep M Llovet.
Curr Opin Oncol, 2008 Jun 06; 20(4). PMID: 18525342    Free PMC article.
Review.
Combining differential expression, chromosomal and pathway analyses for the molecular characterization of renal cell carcinoma.
Kyle A Furge, Karl Dykema, +4 authors, Bin Tean Teh.
Can Urol Assoc J, 2008 Jun 12; 1(2 Suppl). PMID: 18542781    Free PMC article.
Phylogenetic modeling of heterogeneous gene-expression microarray data from cancerous specimens.
Mones S Abu-Asab, Mohamed Chaouchi, Hakima Amri.
OMICS, 2008 Aug 14; 12(3). PMID: 18699725    Free PMC article.
A decade of genome-wide gene expression profiling in acute myeloid leukemia: flashback and prospects.
Bas J Wouters, Bob Löwenberg, Ruud Delwel.
Blood, 2008 Aug 16; 113(2). PMID: 18703705    Free PMC article.
Review.
Stemming the tide of cancer for BRCA1/2 mutation carriers.
Henry T Lynch, Joseph N Marcus, Wendy S Rubinstein.
J Clin Oncol, 2008 Sep 10; 26(26). PMID: 18779610    Free PMC article.
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data.
Jiangang Liu, Andrew Campen, +6 authors, Shuyu Li.
BMC Med Genomics, 2008 Sep 13; 1. PMID: 18786252    Free PMC article.
Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments.
Stefano Parodi, Vito Pistoia, Marco Muselli.
BMC Bioinformatics, 2008 Oct 07; 9. PMID: 18834513    Free PMC article.
Gene expression profiling of breast cancer.
Ting Bao, Nancy E Davidson.
Adv Surg, 2008 Oct 29; 42. PMID: 18953822    Free PMC article.
Review.
Transcriptomes in healthy and diseased gingival tissues.
Ryan T Demmer, Jan H Behle, +5 authors, Panos N Papapanou.
J Periodontol, 2008 Nov 05; 79(11). PMID: 18980520    Free PMC article.
Robust prognostic value of a knowledge-based proliferation signature across large patient microarray studies spanning different cancer types.
M H W Starmans, B Krishnapuram, +8 authors, P Lambin.
Br J Cancer, 2008 Nov 06; 99(11). PMID: 18985037    Free PMC article.
Educational and social-ethical issues in the pursuit of molecular medicine.
Panagiotis A Konstantinopoulos, Michalis V Karamouzis, Athanasios G Papavassiliou.
Mol Med, 2008 Dec 02; 15(1-2). PMID: 19043478    Free PMC article.
Review.
Using systems biology to simplify complex disease: immune cartography.
Ashoka D Polpitiya, Jonathan E McDunn, +2 authors, J Perren Cobb.
Crit Care Med, 2009 Jan 06; 37(1 Suppl). PMID: 19104218    Free PMC article.
Molecular classification of rhabdomyosarcoma--genotypic and phenotypic determinants of diagnosis: a report from the Children's Oncology Group.
Elai Davicioni, Michael J Anderson, +8 authors, Timothy J Triche.
Am J Pathol, 2009 Jan 17; 174(2). PMID: 19147825    Free PMC article.
Application of physicochemically modified silicon substrates as reverse-phase protein microarrays.
A Jasper Nijdam, Michael R Zianni, +6 authors, Mauro Ferrari.
J Proteome Res, 2009 Jan 28; 8(3). PMID: 19170514    Free PMC article.
Dysregulated gene expression networks in human acute myelogenous leukemia stem cells.
Ravindra Majeti, Michael W Becker, +7 authors, Irving L Weissman.
Proc Natl Acad Sci U S A, 2009 Feb 17; 106(9). PMID: 19218430    Free PMC article.
Highly Cited.
A neural network model for constructing endophenotypes of common complex diseases: an application to male young-onset hypertension microarray data.
Ke-Shiuan Lynn, Li-Lan Li, +6 authors, Wen-Harn Pan.
Bioinformatics, 2009 Feb 25; 25(8). PMID: 19237446    Free PMC article.
The tspair package for finding top scoring pair classifiers in R.
Jeffrey T Leek.
Bioinformatics, 2009 Mar 12; 25(9). PMID: 19276151    Free PMC article.
Four-gene expression ratio test for survival in patients undergoing surgery for mesothelioma.
Gavin J Gordon, Lingsheng Dong, +9 authors, Raphael Bueno.
J Natl Cancer Inst, 2009 Apr 30; 101(9). PMID: 19401544    Free PMC article.
A novel information retrieval model for high-throughput molecular medicine modalities.
Firas H Wehbe, Steven H Brown, +3 authors, Constantin F Aliferis.
Cancer Inform, 2009 May 22; 8. PMID: 19458790    Free PMC article.
Institutional shared resources and translational cancer research.
Paolo De Paoli.
J Transl Med, 2009 Jul 01; 7. PMID: 19563639    Free PMC article.
Review.
The molecular characterization and clinical management of multiple myeloma in the post-genome era.
Y Zhou, B Barlogie, J D Shaughnessy.
Leukemia, 2009 Aug 07; 23(11). PMID: 19657360    Free PMC article.
Review.
A microarray analysis of temporal gene expression profiles in thermally injured human skin.
J A Greco, A C Pollins, +2 authors, L B Nanney.
Burns, 2009 Sep 29; 36(2). PMID: 19781859    Free PMC article.
Bioinformatics research on chronic superficial gastritis of Pi-deficiency syndrome by gene arrays.
Yu-long Chen, Wei-wen Chen, +5 authors, Sui-ping Huang.
Chin J Integr Med, 2009 Oct 06; 15(5). PMID: 19802537
Gene expression profiling associated with the progression to poorly differentiated thyroid carcinomas.
J M Pita, A Banito, B M Cavaco, V Leite.
Br J Cancer, 2009 Oct 08; 101(10). PMID: 19809427    Free PMC article.
Making the case for molecular staging of malignant pleural mesothelioma.
Raphael Bueno.
Semin Thorac Cardiovasc Surg, 2009 Oct 14; 21(2). PMID: 19822292    Free PMC article.
Review.
Subgingival bacterial colonization profiles correlate with gingival tissue gene expression.
Panos N Papapanou, Jan H Behle, +5 authors, Ryan T Demmer.
BMC Microbiol, 2009 Oct 20; 9. PMID: 19835625    Free PMC article.
Two-transcript gene expression classifiers in the diagnosis and prognosis of human diseases.
Lucas B Edelman, Giuseppe Toia, +2 authors, Nathan D Price.
BMC Genomics, 2009 Dec 08; 10. PMID: 19961616    Free PMC article.
Genomic markers for decision making: what is preventing us from using markers?
Vicky M Coyle, Patrick G Johnston.
Nat Rev Clin Oncol, 2009 Dec 17; 7(2). PMID: 20010899
Review.
Predictive value of progression-related gene classifier in primary non-muscle invasive bladder cancer.
Wun-Jae Kim, Eun-Jung Kim, +10 authors, Suk-Chul Bae.
Mol Cancer, 2010 Jan 12; 9. PMID: 20059769    Free PMC article.
Highly Cited.
Whole genome expression profiling reveals a significant role for the cell junction and apoptosis pathways in breast cancer stem cells.
Mingzhu Huang, Yuqing Li, Guohua Wu, Fengchun Zhang.
Mol Biotechnol, 2010 Jan 19; 45(1). PMID: 20082156
Gene expression profiles of lung adenocarcinoma linked to histopathological grading and survival but not to EGF-R status: a microarray study.
Jens Neumann, Friedrich Feuerhake, +6 authors, Axel Zur Hausen.
BMC Cancer, 2010 Mar 04; 10. PMID: 20196851    Free PMC article.
Analysis of multiple sarcoma expression datasets: implications for classification, oncogenic pathway activation and chemotherapy resistance.
Panagiotis A Konstantinopoulos, Elena Fountzilas, +6 authors, Dimitrios Spentzos.
PLoS One, 2010 Apr 07; 5(4). PMID: 20368975    Free PMC article.
Gene expression patterns of dengue virus-infected children from nicaragua reveal a distinct signature of increased metabolism.
P'ng Loke, Samantha N Hammond, +5 authors, Eva Harris.
PLoS Negl Trop Dis, 2010 Jun 19; 4(6). PMID: 20559541    Free PMC article.
A decade of systems biology.
Han-Yu Chuang, Matan Hofree, Trey Ideker.
Annu Rev Cell Dev Biol, 2010 Jul 08; 26. PMID: 20604711    Free PMC article.
Highly Cited. Review.
Bioinformatics techniques in microarray research: applied microarray data analysis using R and SAS software.
Ryan T Demmer, Paul Pavlidis, Panos N Papapanou.
Methods Mol Biol, 2010 Aug 19; 666. PMID: 20717798    Free PMC article.
In silico models of cancer.
Lucas B Edelman, James A Eddy, Nathan D Price.
Wiley Interdiscip Rev Syst Biol Med, 2010 Sep 14; 2(4). PMID: 20836040    Free PMC article.
Review.
Integrative analysis of -omics data and histologic scoring in renal disease and transplantation: renal histogenomics.
Paul Perco, Rainer Oberbauer.
Semin Nephrol, 2010 Nov 04; 30(5). PMID: 21044763    Free PMC article.
Review.
Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways.
David F Choy, Barmak Modrek, +8 authors, Joseph R Arron.
J Immunol, 2010 Dec 29; 186(3). PMID: 21187436    Free PMC article.
Gene expression profiles in aldosterone-producing adenomas and adjacent adrenal glands.
Tao Wang, Fumitoshi Satoh, +5 authors, William E Rainey.
Eur J Endocrinol, 2011 Jan 21; 164(4). PMID: 21248073    Free PMC article.
Estimating developmental states of tumors and normal tissues using a linear time-ordered model.
Bo Zhang, Beibei Chen, +3 authors, Runsheng Chen.
BMC Bioinformatics, 2011 Feb 12; 12. PMID: 21310084    Free PMC article.
Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker.
Albert Y Lin, Mei-Sze Chua, +8 authors, Jonathan R Pollack.
PLoS One, 2011 Mar 09; 6(2). PMID: 21383983    Free PMC article.
Exploring genomic profiles of hepatocellular carcinoma.
Hyun Goo Woo, Eun Sung Park, Snorri S Thorgeirsson, Yoon Jun Kim.
Mol Carcinog, 2011 Apr 06; 50(4). PMID: 21465573    Free PMC article.
Review.
Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells.
Victor Trevino, Mahlet G Tadesse, +7 authors, Francesco Falciani.
PLoS One, 2011 Apr 12; 6(3). PMID: 21479216    Free PMC article.
Cluster analysis of placental inflammatory proteins can distinguish preeclampsia from preterm labor and premature membrane rupture in singleton deliveries less than 28 weeks of gestation.
Jessica M Faupel-Badger, Raina N Fichorova, +4 authors, Thomas F McElrath.
Am J Reprod Immunol, 2011 Jun 01; 66(6). PMID: 21623999    Free PMC article.
Why is there a lack of consensus on molecular subgroups of glioblastoma? Understanding the nature of biological and statistical variability in glioblastoma expression data.
Nicholas F Marko, John Quackenbush, Robert J Weil.
PLoS One, 2011 Aug 11; 6(7). PMID: 21829433    Free PMC article.
Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets.
George W Bassel, Enrico Glaab, +2 authors, Jaume Bacardit.
Plant Cell, 2011 Sep 08; 23(9). PMID: 21896882    Free PMC article.
Gene-expression signatures: biomarkers toward diagnosing multiple sclerosis.
J T Tossberg, P S Crooke, +8 authors, T M Aune.
Genes Immun, 2011 Sep 23; 13(2). PMID: 21938015    Free PMC article.
Redefining the relevance of established cancer cell lines to the study of mechanisms of clinical anti-cancer drug resistance.
Jean-Pierre Gillet, Anna Maria Calcagno, +14 authors, Michael M Gottesman.
Proc Natl Acad Sci U S A, 2011 Nov 10; 108(46). PMID: 22068913    Free PMC article.
Highly Cited.
Profiling of linker histone variants in ovarian cancer.
Magdalena Medrzycki, Yunzhe Zhang, John F McDonald, Yuhong Fan.
Front Biosci (Landmark Ed), 2011 Dec 29; 17. PMID: 22201751    Free PMC article.
Review.
Post-genomic clinical trials: the perspective of ACGT.
N Graf, C Desmedt, +6 authors, M Tsiknakis.
Ecancermedicalscience, 2008 Jan 01; 2. PMID: 22275963    Free PMC article.
The biology of personalized cancer medicine: facing individual complexities underlying hallmark capabilities.
Michele De Palma, Douglas Hanahan.
Mol Oncol, 2012 Mar 01; 6(2). PMID: 22360993    Free PMC article.
Review.
The molecular basis of chemoradiosensitivity in rectal cancer: implications for personalized therapies.
Marian Grade, Hendrik A Wolff, Jochen Gaedcke, B Michael Ghadimi.
Langenbecks Arch Surg, 2012 Mar 03; 397(4). PMID: 22382702    Free PMC article.
Review.
Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles.
Sally J Deeb, Rochelle C J D'Souza, +2 authors, Matthias Mann.
Mol Cell Proteomics, 2012 Mar 24; 11(5). PMID: 22442255    Free PMC article.
[The role of molecular genetics in dermatologic diagnosis].
M Braun-Falco, T Ruzicka.
Hautarzt, 2012 May 11; 63 Suppl 1. PMID: 22543946
Review.
Cardiovascular genomics: a biomarker identification pipeline.
John H Phan, Chang F Quo, May Dongmei Wang.
IEEE Trans Inf Technol Biomed, 2012 May 23; 16(5). PMID: 22614726    Free PMC article.
Review.
Assessment method for a power analysis to identify differentially expressed pathways.
Shailesh Tripathi, Frank Emmert-Streib.
PLoS One, 2012 May 26; 7(5). PMID: 22629411    Free PMC article.
An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα.
Mohammad Ohid Ullah, Michael Müller, Guido J E J Hooiveld.
Bioinform Biol Insights, 2012 Jul 12; 6. PMID: 22783064    Free PMC article.
Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network.
Jordi Serra-Musach, Helena Aguilar, +5 authors, Miguel Angel Pujana.
Integr Biol (Camb), 2012 Jul 19; 4(9). PMID: 22806580    Free PMC article.
Transcriptomic biomarkers of cardiovascular disease.
Dawn M Pedrotty, Michael P Morley, Thomas P Cappola.
Prog Cardiovasc Dis, 2012 Jul 25; 55(1). PMID: 22824111    Free PMC article.
Review.
Perspectives of integrative cancer genomics in next generation sequencing era.
So Mee Kwon, Hyunwoo Cho, +3 authors, Hyun Goo Woo.
Genomics Inform, 2012 Oct 30; 10(2). PMID: 23105932    Free PMC article.
Interpreting noncoding genetic variation in complex traits and human disease.
Lucas D Ward, Manolis Kellis.
Nat Biotechnol, 2012 Nov 10; 30(11). PMID: 23138309    Free PMC article.
Highly Cited. Review.
Predicting outcomes in radiation oncology--multifactorial decision support systems.
Philippe Lambin, Ruud G P M van Stiphout, +11 authors, Andre Dekker.
Nat Rev Clin Oncol, 2012 Nov 21; 10(1). PMID: 23165123    Free PMC article.
Highly Cited. Review.
Using gene expression data to identify certain gastro-intestinal diseases.
Philip S Crooke, John T Tossberg, +6 authors, Thomas M Aune.
J Clin Bioinforma, 2012 Nov 23; 2(1). PMID: 23171526    Free PMC article.
Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.
John H Phan, Chang F Quo, Chihwen Cheng, May Dongmei Wang.
IEEE Rev Biomed Eng, 2012 Dec 13; 5. PMID: 23231990    Free PMC article.
Review.
Sequential binary gene ratio tests define a novel molecular diagnostic strategy for malignant pleural mesothelioma.
Assunta De Rienzo, William G Richards, +7 authors, Raphael Bueno.
Clin Cancer Res, 2013 Mar 16; 19(9). PMID: 23493352    Free PMC article.
Highly accurate two-gene signature for gastric cancer.
Zhi Yan, Weitian Xu, +4 authors, Guorong Zheng.
Med Oncol, 2013 Apr 23; 30(2). PMID: 23606240
Modelling gene expression profiles related to prostate tumor progression using binary states.
Emmanuel Martinez, Victor Trevino.
Theor Biol Med Model, 2013 Jun 01; 10. PMID: 23721350    Free PMC article.
VEZT, a novel putative tumor suppressor, suppresses the growth and tumorigenicity of gastric cancer.
Ruizhen Miao, Xiaobo Guo, +5 authors, Chensheng Li.
PLoS One, 2013 Sep 27; 8(9). PMID: 24069310    Free PMC article.
Gene expression ratio test distinguishes normal lung from lung tumors in solid tissue and FNA biopsies.
Assunta De Rienzo, Beow Y Yeap, +5 authors, Raphael Bueno.
J Mol Diagn, 2014 Jan 15; 16(2). PMID: 24412526    Free PMC article.
Novel combination markers for predicting survival in patients with muscle invasive bladder cancer: USP18 and DGCR2.
Ye-Hwan Kim, Won Tae Kim, +7 authors, Wun-Jae Kim.
J Korean Med Sci, 2014 Mar 13; 29(3). PMID: 24616583    Free PMC article.
Network Medicine: New Paradigm in the -Omics Era.
Nancy Lan Guo.
Anat Physiol, 2011 Dec 13; 1(1). PMID: 24634802    Free PMC article.
Discriminating gene expression signature of radiation-induced thyroid tumors after either external exposure or internal contamination.
Catherine Ory, Nicolas Ugolin, +2 authors, Sylvie Chevillard.
Genes (Basel), 2011 Jan 01; 3(1). PMID: 24704841    Free PMC article.
Multiclass cancer classification based on gene expression comparison.
Sitan Yang, Daniel Q Naiman.
Stat Appl Genet Mol Biol, 2014 Jun 12; 13(4). PMID: 24918456    Free PMC article.
Current status of predictive biomarkers for neoadjuvant therapy in esophageal cancer.
Norihisa Uemura, Tadashi Kondo.
World J Gastrointest Pathophysiol, 2014 Aug 19; 5(3). PMID: 25133032    Free PMC article.
Review.
Identification of gene signatures used to recognize biological characteristics of gastric cancer upon gene expression data.
Zhi Yan, Brian T Luke, +7 authors, Youyong Lu.
Biomark Insights, 2014 Sep 12; 9. PMID: 25210421    Free PMC article.
Network-based identification of biomarkers coexpressed with multiple pathways.
Nancy Lan Guo, Ying-Wooi Wan.
Cancer Inform, 2014 Nov 14; 13(Suppl 5). PMID: 25392692    Free PMC article.
Review.
Discovery of a 29-gene panel in peripheral blood mononuclear cells for the detection of colorectal cancer and adenomas using high throughput real-time PCR.
Laura Ciarloni, Sahar Hosseinian, +4 authors, DGNP-COL-0310 Study Group.
PLoS One, 2015 Apr 16; 10(4). PMID: 25876024    Free PMC article.
CrossNorm: a novel normalization strategy for microarray data in cancers.
Lixin Cheng, Leung-Yau Lo, +2 authors, Kwong-Sak Leung.
Sci Rep, 2016 Jan 07; 6. PMID: 26732145    Free PMC article.
Breast cancer subtypes: morphologic and biologic characterization.
Shahla Masood.
Womens Health (Lond), 2016 Jan 13; 12(1). PMID: 26756229    Free PMC article.
The Influence of the Global Gene Expression Shift on Downstream Analyses.
Qifeng Xu, Xuegong Zhang.
PLoS One, 2016 Apr 20; 11(4). PMID: 27092944    Free PMC article.
Omics Profiling in Precision Oncology.
Kun-Hsing Yu, Michael Snyder.
Mol Cell Proteomics, 2016 Apr 22; 15(8). PMID: 27099341    Free PMC article.
Review.
Potential biomarkers for esophageal cancer.
Cheng Tan, Xia Qian, +4 authors, Jing Cai.
Springerplus, 2016 Apr 28; 5. PMID: 27119071    Free PMC article.
Review.
Competence Classification of Cumulus and Granulosa Cell Transcriptome in Embryos Matched by Morphology and Female Age.
Rehannah Borup, Lea Langhoff Thuesen, +4 authors, Marie Louise Grøndahl.
PLoS One, 2016 Apr 30; 11(4). PMID: 27128483    Free PMC article.
Multi-omics landscapes of colorectal cancer subtypes discriminated by an individualized prognostic signature for 5-fluorouracil-based chemotherapy.
M Tong, W Zheng, +11 authors, Z Guo.
Oncogenesis, 2016 Jul 20; 5(7). PMID: 27429074    Free PMC article.
Cancer-testis antigens PRAME and NY-ESO-1 correlate with tumour grade and poor prognosis in myxoid liposarcoma.
Kunio Iura, Kenichi Kohashi, +6 authors, Yoshinao Oda.
J Pathol Clin Res, 2016 Aug 09; 1(3). PMID: 27499900    Free PMC article.
Validation of a Gene Expression Test for Mesothelioma Prognosis in Formalin-Fixed Paraffin-Embedded Tissues.
Assunta De Rienzo, Robert W Cook, +11 authors, Raphael Bueno.
J Mol Diagn, 2016 Nov 20; 19(1). PMID: 27863259    Free PMC article.
A statistical framework for applying RNA profiling to chemical hazard detection.
Mitchell S Kostich.
Chemosphere, 2017 Sep 05; 188. PMID: 28869846    Free PMC article.
Review.
Screening for candidate genes related to breast cancer with cDNA microarray analysis.
Yu-Juan Xiang, Qin-Ye Fu, +8 authors, Ming-Ming Guo.
Chronic Dis Transl Med, 2015 Mar 05; 1(2). PMID: 29062989    Free PMC article.
Identification of gene pairs through penalized regression subject to constraints.
Rex Shen, Lan Luo, Hui Jiang.
BMC Bioinformatics, 2017 Nov 05; 18(1). PMID: 29100492    Free PMC article.
A seven-gene signature predicts overall survival of patients with colorectal cancer.
Huarong Chen, Xiaoqiang Sun, +3 authors, Shu Zheng.
Oncotarget, 2016 Aug 01; 8(56). PMID: 29221110    Free PMC article.
Establishment of a nine-gene prognostic model for predicting overall survival of patients with endometrial carcinoma.
Jianchao Ying, Qian Wang, Teng Xu, Jianxin Lyu.
Cancer Med, 2018 Apr 18; 7(6). PMID: 29665298    Free PMC article.
Differential expression patterns of housekeeping genes increase diagnostic and prognostic value in lung cancer.
Yu-Chun Chang, Yan Ding, +3 authors, Li-Li Hsiao.
PeerJ, 2018 May 16; 6. PMID: 29761043    Free PMC article.
Gene expression profiling in human corticotroph tumours reveals distinct, neuroendocrine profiles.
Maria Francesca Cassarino, Alberto G Ambrogio, +6 authors, Francesca Pecori Giraldi.
J Neuroendocrinol, 2018 Jun 20; 30(9). PMID: 29920815    Free PMC article.
HORMAD2 methylation-mediated epigenetic regulation of gene expression in thyroid cancer.
Qiuyu Lin, Sen Hou, Feng Guan, Chenghe Lin.
J Cell Mol Med, 2018 Jul 25; 22(10). PMID: 30039914    Free PMC article.
Identification of differentially expressed genes by means of outlier detection.
Itziar Irigoien, Concepción Arenas.
BMC Bioinformatics, 2018 Sep 12; 19(1). PMID: 30200879    Free PMC article.
Transcriptome profiling-based identification of prognostic subtypes and multi-omics signatures of glioblastoma.
Junseong Park, Jin-Kyoung Shim, +3 authors, Seok-Gu Kang.
Sci Rep, 2019 Jul 25; 9(1). PMID: 31332251    Free PMC article.
Survival Risk Prediction Models of Gliomas Based on IDH and 1p/19q.
Han Zou, Chang Li, Siyi Wanggou, Xuejun Li.
J Cancer, 2020 Jun 04; 11(15). PMID: 32489448    Free PMC article.
Informatively clustering longitudinal microarrays using binary or survival outcome data.
Jessie J Hsu, Dianne M Finkelstein, David A Schoenfeld.
Commun Stat Case Stud Data Anal Appl, 2018 Jan 01; 4(1). PMID: 30854419    Free PMC article.
A five-gene signature to predict the overall survival time of patients with esophageal squamous cell carcinoma.
Wenwu He, Qunlun Yan, Liangmin Fu, Yongtao Han.
Oncol Lett, 2019 Aug 20; 18(2). PMID: 31423201    Free PMC article.
Prognostic value of a nine-gene signature in glioma patients based on mRNA expression profiling.
Zhao-Shi Bao, Ming-Yang Li, +7 authors, Tao Jiang.
CNS Neurosci Ther, 2013 Nov 28; 20(2). PMID: 24279471    Free PMC article.
Genome-Wide Analysis of Periodontal and Peri-Implant Cells and Tissues.
Moritz Kebschull, Claudia Hülsmann, Per Hoffmann, Panos N Papapanou.
Methods Mol Biol, 2016 Dec 08; 1537. PMID: 27924602    Free PMC article.
Advances on diagnostic biomarkers of pancreatic ductal adenocarcinoma: A systems biology perspective.
Wu-Hu Zhang, Wen-Quan Wang, +12 authors, Liang Liu.
Comput Struct Biotechnol J, 2020 Dec 12; 18. PMID: 33304458    Free PMC article.
Review.
Identification of novel tumor suppressor proteases by degradome profiling of colorectal carcinomas.
Julia M Fraile, Gonzalo R Ordóñez, +6 authors, Xose S Puente.
Oncotarget, 2013 Sep 15; 4(11). PMID: 33400726    Free PMC article.
Identification of Overexpressed Genes in Malignant Pleural Mesothelioma.
Federica Morani, Luisa Bisceglia, +4 authors, Federica Gemignani.
Int J Mol Sci, 2021 Apr 04; 22(5). PMID: 33800494    Free PMC article.
Potential targets identified in adenoid cystic carcinoma point out new directions for further research.
Zhenan Liu, Jian Gao, +3 authors, Tingting Yu.
Am J Transl Res, 2021 Apr 13; 13(3). PMID: 33841642    Free PMC article.