Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer.
Jack X Yu, Anieta M Sieuwerts, +5 authors, Yi Zhang, John W M Martens, Marcel Smid, Jan G M Klijn, Yixin Wang, John A Foekens. less
BMC Cancer, 2007 Sep 27; 7. PMID: 17894856 Free PMC article.
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Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods.
Manuela Zucknick, Sylvia Richardson, Euan A Stronach.
Stat Appl Genet Mol Biol, 2008 Mar 04; 7(1). PMID: 18312212 Free PMC article.
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A gene sets approach for identifying prognostic gene signatures for outcome prediction.
Seon-Young Kim, Yong Sung Kim.
BMC Genomics, 2008 Apr 18; 9. PMID: 18416850 Free PMC article.
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From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells.
Mikhail G Dozmorov, Kimberly D Kyker, +6 authors, Paul J Hauser, Ricardo Saban, David D Buethe, Igor Dozmorov, Michael B Centola, Daniel J Culkin, Robert E Hurst. less
BMC Bioinformatics, 2008 Sep 20; 9 Suppl 9. PMID: 18793468 Free PMC article.
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Lost in translation: problems and pitfalls in translating laboratory observations to clinical utility.
Richard Simon.
Eur J Cancer, 2008 Nov 04; 44(18). PMID: 18977655 Free PMC article.
Review.
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Integrating biological knowledge with gene expression profiles for survival prediction of cancer.
Xi Chen, Lily Wang.
J Comput Biol, 2009 Feb 03; 16(2). PMID: 19183004 Free PMC article.
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Investigation of reproducibility of differentially expressed genes in DNA microarrays through statistical simulation.
Xiaohui Fan, Leming Shi, +3 authors, Hong Fang, Stephen Harris, Roger Perkins, Weida Tong. less
BMC Proc, 2009 Mar 13; 3 Suppl 2. PMID: 19278560 Free PMC article.
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Emerging concepts in biomarker discovery; the US-Japan Workshop on Immunological Molecular Markers in Oncology.
Hideaki Tahara, Marimo Sato, +53 authors, Magdalena Thurin, Ena Wang, Lisa H Butterfield, Mary L Disis, Bernard A Fox, Peter P Lee, Samir N Khleif, Jon M Wigginton, Stefan Ambs, Yasunori Akutsu, Damien Chaussabel, Yuichiro Doki, Oleg Eremin, Wolf Hervé Fridman, Yoshihiko Hirohashi, Kohzoh Imai, James Jacobson, Masahisa Jinushi, Akira Kanamoto, Mohammed Kashani-Sabet, Kazunori Kato, Yutaka Kawakami, John M Kirkwood, Thomas O Kleen, Paul V Lehmann, Lance Liotta, Michael T Lotze, Michele Maio, Anatoli Malyguine, Giuseppe Masucci, Hisahiro Matsubara, Shawmarie Mayrand-Chung, Kiminori Nakamura, Hiroyoshi Nishikawa, A Karolina Palucka, Emanuel F Petricoin, Zoltan Pos, Antoni Ribas, Licia Rivoltini, Noriyuki Sato, Hiroshi Shiku, Craig L Slingluff, Howard Streicher, David F Stroncek, Hiroya Takeuchi, Minoru Toyota, Hisashi Wada, Xifeng Wu, Julia Wulfkuhle, Tomonori Yaguchi, Benjamin Zeskind, Yingdong Zhao, Mai-Britt Zocca, Francesco M Marincola. less
J Transl Med, 2009 Jun 19; 7. PMID: 19534815 Free PMC article.
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Gene expression classifiers for relapse-free survival and minimal residual disease improve risk classification and outcome prediction in pediatric B-precursor acute lymphoblastic leukemia.
Huining Kang, I-Ming Chen, +19 authors, Carla S Wilson, Edward J Bedrick, Richard C Harvey, Susan R Atlas, Meenakshi Devidas, Charles G Mullighan, Xuefei Wang, Maurice Murphy, Kerem Ar, Walker Wharton, Michael J Borowitz, W Paul Bowman, Deepa Bhojwani, William L Carroll, Bruce M Camitta, Gregory H Reaman, Malcolm A Smith, James R Downing, Stephen P Hunger, Cheryl L Willman. less
Blood, 2009 Nov 03; 115(7). PMID: 19880498 Free PMC article.
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Stability of ranked gene lists in large microarray analysis studies.
Gregor Stiglic, Peter Kokol.
J Biomed Biotechnol, 2010 Jul 14; 2010. PMID: 20625502 Free PMC article.
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Biomarker studies: a call for a comprehensive biomarker study registry.
Fabrice Andre, Lisa M McShane, +5 authors, Stefan Michiels, David F Ransohoff, Douglas G Altman, Jorge S Reis-Filho, Daniel F Hayes, Lajos Pusztai. less
Nat Rev Clin Oncol, 2011 Mar 03; 8(3). PMID: 21364690
Review.
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Molecular sub-classification of renal epithelial tumors using meta-analysis of gene expression microarrays.
Thomas Sanford, Paul H Chung, +4 authors, Ariel Reinish, Vladimir Valera, Ramaprasad Srinivasan, W Marston Linehan, Gennady Bratslavsky. less
PLoS One, 2011 Aug 06; 6(7). PMID: 21818257 Free PMC article.
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Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence.
Mary Jo Fackler, Christopher B Umbricht, +13 authors, Danielle Williams, Pedram Argani, Leigh-Ann Cruz, Vanessa F Merino, Wei Wen Teo, Zhe Zhang, Peng Huang, Kala Visvananthan, Jeffrey Marks, Stephen Ethier, Joe W Gray, Antonio C Wolff, Leslie M Cope, Saraswati Sukumar. less
Cancer Res, 2011 Aug 10; 71(19). PMID: 21825015 Free PMC article.
Highly Cited.
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Cancer biomarkers: selecting the right drug for the right patient.
Gary J Kelloff, Caroline C Sigman.
Nat Rev Drug Discov, 2012 Feb 11; 11(3). PMID: 22322254
Highly Cited. Review.
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Analyzing longitudinal data to characterize the accuracy of markers used to select treatment.
Colleen M Sitlani, Patrick J Heagerty.
Stat Med, 2014 Mar 14; 33(17). PMID: 24623550 Free PMC article.
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In multiple myeloma, 14q32 translocations are nonrandom chromosomal fusions driving high expression levels of the respective partner genes.
Erming Tian, Jeffrey R Sawyer, +4 authors, Christoph J Heuck, Qing Zhang, Frits van Rhee, Bart Barlogie, Joshua Epstein. less
Genes Chromosomes Cancer, 2014 Mar 19; 53(7). PMID: 24638926 Free PMC article.
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An argument for mechanism-based statistical inference in cancer.
Donald Geman, Michael Ochs, +2 authors, Nathan D Price, Cristian Tomasetti, Laurent Younes. less
Hum Genet, 2014 Nov 09; 134(5). PMID: 25381197 Free PMC article.
Review.
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An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.
Zhenqiang Su, Hong Fang, +16 authors, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee J Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong. less
Genome Biol, 2015 Jan 31; 15(12). PMID: 25633159 Free PMC article.
Highly Cited.
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Methodological issues in current practice may lead to bias in the development of biomarker combinations for predicting acute kidney injury.
Allison Meisner, Kathleen F Kerr, +2 authors, Heather Thiessen-Philbrook, Steven G Coca, Chirag R Parikh. less
Kidney Int, 2015 Sep 24; 89(2). PMID: 26398494 Free PMC article.
Systematic Review.
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Improving accuracy of RNA-based diagnosis and prognosis of oral cancer by using noninvasive methods.
Guy R Adami, Jessica L Tang, Michael R Markiewicz.
Oral Oncol, 2017 Jun 01; 69. PMID: 28559022 Free PMC article.
Review.
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Integrated Multiparametric Radiomics and Informatics System for Characterizing Breast Tumor Characteristics with the OncotypeDX Gene Assay.
Michael A Jacobs, Christopher B Umbricht, +5 authors, Vishwa S Parekh, Riham H El Khouli, Leslie Cope, Katarzyna J Macura, Susan Harvey, Antonio C Wolff. less
Cancers (Basel), 2020 Oct 01; 12(10). PMID: 32992569 Free PMC article.
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