Journal Article
. 2019 Oct; 2019:3-10.
doi: 10.1007/978-3-030-23937-4_1.

Bringing Open Data to Whole Slide Imaging

Sébastien Besson 1 Roger Leigh 1 Melissa Linkert 2 Chris Allan 2 Jean-Marie Burel 1 Mark Carroll 1 David Gault 1 Riad Gozim 1 Simon Li 1 Dominik Lindner 1 Josh Moore 1 Will Moore 1 Petr Walczysko 1 Frances Wong 1 Jason R Swedlow 1 
Affiliations
  • PMID: 31579322
  •     22 References
  •     4 citations

Abstract

Faced with the need to support a growing number of whole slide imaging (WSI) file formats, our team has extended a long-standing community file format (OME-TIFF) for use in digital pathology. The format makes use of the core TIFF specification to store multi-resolution (or "pyramidal") representations of a single slide in a flexible, performant manner. Here we describe the structure of this format, its performance characteristics, as well as an open-source library support for reading and writing pyramidal OME-TIFFs.

Keywords: OME-TIFF; open data; open file format; whole slide imaging.

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