Journal Article
. 1998 Jun;393(6684).
doi: 10.1038/30918.

Collective dynamics of 'small-world' networks

D J Watts 1 S H Strogatz  
Affiliations
  • PMID: 9623998
  •     3649 citations

Abstract

Networks of coupled dynamical systems have been used to model biological oscillators, Josephson junction arrays, excitable media, neural networks, spatial games, genetic control networks and many other self-organizing systems. Ordinarily, the connection topology is assumed to be either completely regular or completely random. But many biological, technological and social networks lie somewhere between these two extremes. Here we explore simple models of networks that can be tuned through this middle ground: regular networks 'rewired' to introduce increasing amounts of disorder. We find that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs. We call them 'small-world' networks, by analogy with the small-world phenomenon (popularly known as six degrees of separation. The neural network of the worm Caenorhabditis elegans, the power grid of the western United States, and the collaboration graph of film actors are shown to be small-world networks. Models of dynamical systems with small-world coupling display enhanced signal-propagation speed, computational power, and synchronizability. In particular, infectious diseases spread more easily in small-world networks than in regular lattices.

The effects of local spatial structure on epidemiological invasions.
M J Keeling.
Proc Biol Sci, 1999 May 27; 266(1421). PMID: 10343409    Free PMC article.
Highly Cited.
'Small worlds' and the evolution of virulence: infection occurs locally and at a distance.
M Boots, A Sasaki.
Proc Biol Sci, 1999 Dec 10; 266(1432). PMID: 10584335    Free PMC article.
Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat.
C C Hilgetag, G A Burns, +2 authors, M P Young.
Philos Trans R Soc Lond B Biol Sci, 2000 Mar 07; 355(1393). PMID: 10703046    Free PMC article.
Highly Cited.
Computational analysis of functional connectivity between areas of primate cerebral cortex.
K E Stephan, C C Hilgetag, +3 authors, R Kötter.
Philos Trans R Soc Lond B Biol Sci, 2000 Mar 07; 355(1393). PMID: 10703047    Free PMC article.
Global relationship between anatomical connectivity and activity propagation in the cerebral cortex.
R Kötter, F T Sommer.
Philos Trans R Soc Lond B Biol Sci, 2000 Mar 07; 355(1393). PMID: 10703048    Free PMC article.
Classes of small-world networks.
L A Amaral, A Scala, M Barthelemy, H E Stanley.
Proc Natl Acad Sci U S A, 2000 Sep 27; 97(21). PMID: 11005838    Free PMC article.
Highly Cited.
The structure of scientific collaboration networks.
M E Newman.
Proc Natl Acad Sci U S A, 2001 Jan 10; 98(2). PMID: 11149952    Free PMC article.
Highly Cited.
A model for the emergence of cooperation, interdependence, and structure in evolving networks.
S Jain, S Krishna.
Proc Natl Acad Sci U S A, 2001 Jan 10; 98(2). PMID: 11149953    Free PMC article.
Complexity and fragility in ecological networks.
R V Solé, J M Montoya.
Proc Biol Sci, 2001 Sep 26; 268(1480). PMID: 11571051    Free PMC article.
The small world of human language.
R Ferrer I Cancho, R V Solé.
Proc Biol Sci, 2001 Oct 25; 268(1482). PMID: 11674874    Free PMC article.
Hippocampal GABAergic interneurons: a physiological perspective.
G Buzsáki.
Neurochem Res, 2001 Nov 09; 26(8-9). PMID: 11699941
Review.
The functional genomic response of developing embryonic submandibular glands to NF-kappa B inhibition.
M Melnick, H Chen, Y Min Zhou, T Jaskoll.
BMC Dev Biol, 2001 Nov 22; 1. PMID: 11716784    Free PMC article.
Language as an evolving word web.
S N Dorogovtsev, J F Mendes.
Proc Biol Sci, 2001 Dec 26; 268(1485). PMID: 11749717    Free PMC article.
Global organization of the Wordnet lexicon.
Mariano Sigman, Guillermo A Cecchi.
Proc Natl Acad Sci U S A, 2002 Feb 07; 99(3). PMID: 11830677    Free PMC article.
Large extinctions in an evolutionary model: the role of innovation and keystone species.
Sanjay Jain, Sandeep Krishna.
Proc Natl Acad Sci U S A, 2002 Feb 14; 99(4). PMID: 11842190    Free PMC article.
Random graph models of social networks.
M E J Newman, D J Watts, S H Strogatz.
Proc Natl Acad Sci U S A, 2002 Mar 05; 99 Suppl 1. PMID: 11875211    Free PMC article.
Curvature of co-links uncovers hidden thematic layers in the World Wide Web.
Jean-Pierre Eckmann, Elisha Moses.
Proc Natl Acad Sci U S A, 2002 Apr 25; 99(9). PMID: 11972019    Free PMC article.
The identification of functional modules from the genomic association of genes.
Berend Snel, Peer Bork, Martijn A Huynen.
Proc Natl Acad Sci U S A, 2002 May 02; 99(9). PMID: 11983890    Free PMC article.
Community structure in social and biological networks.
M Girvan, M E J Newman.
Proc Natl Acad Sci U S A, 2002 Jun 13; 99(12). PMID: 12060727    Free PMC article.
Highly Cited. Review.
Topological determinants of protein folding.
Nikolay V Dokholyan, Lewyn Li, Feng Ding, Eugene I Shakhnovich.
Proc Natl Acad Sci U S A, 2002 Jun 27; 99(13). PMID: 12084924    Free PMC article.
Food-web structure and network theory: The role of connectance and size.
Jennifer A Dunne, Richard J Williams, Neo D Martinez.
Proc Natl Acad Sci U S A, 2002 Sep 18; 99(20). PMID: 12235364    Free PMC article.
Highly Cited.
Two degrees of separation in complex food webs.
Richard J Williams, Eric L Berlow, +2 authors, Neo D Martinez.
Proc Natl Acad Sci U S A, 2002 Sep 18; 99(20). PMID: 12235367    Free PMC article.
Modeling dynamic and network heterogeneities in the spread of sexually transmitted diseases.
Ken T D Eames, Matt J Keeling.
Proc Natl Acad Sci U S A, 2002 Sep 25; 99(20). PMID: 12271127    Free PMC article.
Highly Cited.
The society of genes: networks of functional links between genes from comparative genomics.
Itai Yanai, Charles DeLisi.
Genome Biol, 2002 Nov 14; 3(11). PMID: 12429063    Free PMC article.
Association patterns and shoal fidelity in the three-spined stickleback.
Ashley J W Ward, Marc S Botham, +4 authors, Jens Krause.
Proc Biol Sci, 2002 Dec 24; 269(1508). PMID: 12495488    Free PMC article.
An automated method for finding molecular complexes in large protein interaction networks.
Gary D Bader, Christopher W V Hogue.
BMC Bioinformatics, 2003 Jan 15; 4. PMID: 12525261    Free PMC article.
Highly Cited.
Small worlds in RNA structures.
Stefan Wuchty.
Nucleic Acids Res, 2003 Feb 01; 31(3). PMID: 12560509    Free PMC article.
Assessing experimentally derived interactions in a small world.
Debra S Goldberg, Frederick P Roth.
Proc Natl Acad Sci U S A, 2003 Apr 05; 100(8). PMID: 12676999    Free PMC article.
Highly Cited.
Topological structure analysis of the protein-protein interaction network in budding yeast.
Dongbo Bu, Yi Zhao, +9 authors, Runsheng Chen.
Nucleic Acids Res, 2003 Apr 25; 31(9). PMID: 12711690    Free PMC article.
Disease evolution on networks: the role of contact structure.
Jonathan M Read, Matt J Keeling.
Proc Biol Sci, 2003 Apr 26; 270(1516). PMID: 12713743    Free PMC article.
DNA microarray data and contextual analysis of correlation graphs.
Jacques Rougemont, Pascal Hingamp.
BMC Bioinformatics, 2003 May 02; 4. PMID: 12720549    Free PMC article.
Are implicitly activated associates selectively activated?
Douglas L Nelson, Vanesa M McKinney, Cathy L McEvoy.
Psychon Bull Rev, 2003 May 16; 10(1). PMID: 12747498
Protein dynamics, thermal stability, and free-energy landscapes: a molecular dynamics investigation.
Ivano Tavernelli, Simona Cotesta, Ernesto E Di Iorio.
Biophys J, 2003 Sep 26; 85(4). PMID: 14507727    Free PMC article.
Information exchange and the robustness of organizational networks.
Peter Sheridan Dodds, Duncan J Watts, Charles F Sabel.
Proc Natl Acad Sci U S A, 2003 Oct 07; 100(21). PMID: 14528009    Free PMC article.
Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.
Dan Bolser, Panos Dafas, +2 authors, Michael Schroeder.
BMC Bioinformatics, 2003 Oct 09; 4. PMID: 14531933    Free PMC article.
The emergent properties of a dolphin social network.
David Lusseau.
Proc Biol Sci, 2003 Dec 12; 270 Suppl 2. PMID: 14667378    Free PMC article.
Small-world communication of residues and significance for protein dynamics.
Ali Rana Atilgan, Pelin Akan, Canan Baysal.
Biophys J, 2003 Dec 26; 86(1 Pt 1). PMID: 14695252    Free PMC article.
TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.
Haiyuan Yu, Xiaowei Zhu, +2 authors, Mark Gerstein.
Nucleic Acids Res, 2004 Jan 16; 32(1). PMID: 14724320    Free PMC article.
Similarities and differences in genome-wide expression data of six organisms.
Sven Bergmann, Jan Ihmels, Naama Barkai.
PLoS Biol, 2004 Jan 23; 2(1). PMID: 14737187    Free PMC article.
Highly Cited.
The rise and fall of a networked society: a formal model.
Matteo Marsili, Fernando Vega-Redondo, Frantisek Slanina.
Proc Natl Acad Sci U S A, 2004 Jan 28; 101(6). PMID: 14745030    Free PMC article.
Extracting knowledge from the World Wide Web.
Monika Henzinger, Steve Lawrence.
Proc Natl Acad Sci U S A, 2004 Jan 28; 101 Suppl 1. PMID: 14745041    Free PMC article.
Coauthorship networks and patterns of scientific collaboration.
M E J Newman.
Proc Natl Acad Sci U S A, 2004 Jan 28; 101 Suppl 1. PMID: 14745042    Free PMC article.
Highly Cited.
Tracking evolving communities in large linked networks.
John Hopcroft, Omar Khan, Brian Kulis, Bart Selman.
Proc Natl Acad Sci U S A, 2004 Feb 06; 101 Suppl 1. PMID: 14757820    Free PMC article.
The metabolic world of Escherichia coli is not small.
Masanori Arita.
Proc Natl Acad Sci U S A, 2004 Feb 06; 101(6). PMID: 14757824    Free PMC article.
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model.
Vera van Noort, Berend Snel, Martijn A Huynen.
EMBO Rep, 2004 Feb 18; 5(3). PMID: 14968131    Free PMC article.
The simultaneous evolution of author and paper networks.
Katy Börner, Jeegar T Maru, Robert L Goldstone.
Proc Natl Acad Sci U S A, 2004 Feb 21; 101 Suppl 1. PMID: 14976254    Free PMC article.
The architecture of complex weighted networks.
A Barrat, M Barthélemy, R Pastor-Satorras, A Vespignani.
Proc Natl Acad Sci U S A, 2004 Mar 10; 101(11). PMID: 15007165    Free PMC article.
Highly Cited. Review.
Molecular evolution in large genetic networks: does connectivity equal constraint?
Matthew W Hahn, Gavin C Conant, Andreas Wagner.
J Mol Evol, 2004 Mar 26; 58(2). PMID: 15042341
Response of complex networks to stimuli.
Yaneer Bar-Yam, Irving R Epstein.
Proc Natl Acad Sci U S A, 2004 Apr 09; 101(13). PMID: 15070719    Free PMC article.
Network analysis of metabolic enzyme evolution in Escherichia coli.
Sara Light, Per Kraulis.
BMC Bioinformatics, 2004 Apr 29; 5. PMID: 15113413    Free PMC article.
The effects of host contact network structure on pathogen diversity and strain structure.
Caroline O'F Buckee, Katia Koelle, Matthew J Mustard, Sunetra Gupta.
Proc Natl Acad Sci U S A, 2004 Jul 13; 101(29). PMID: 15247422    Free PMC article.
Design of a directed molecular network.
Gonen Ashkenasy, Reshma Jagasia, Maneesh Yadav, M Reza Ghadiri.
Proc Natl Acad Sci U S A, 2004 Jul 17; 101(30). PMID: 15256596    Free PMC article.
Social networks and collateral health effects.
Nicholas A Christakis.
BMJ, 2004 Jul 24; 329(7459). PMID: 15271805    Free PMC article.
Efficient system-wide coordination in noisy environments.
André A Moreira, Abhishek Mathur, Daniel Diermeier, Luís A N Amaral.
Proc Natl Acad Sci U S A, 2004 Aug 07; 101(33). PMID: 15297617    Free PMC article.
The small world of the cerebral cortex.
Olaf Sporns, Jonathan D Zwi.
Neuroinformatics, 2004 Aug 21; 2(2). PMID: 15319512
Highly Cited. Review.
Connectivity and dynamics of neural information processing.
Viktor K Jirsa.
Neuroinformatics, 2004 Aug 21; 2(2). PMID: 15319516
Review.
Clustered organization of cortical connectivity.
Claus C Hilgetag, Marcus Kaiser.
Neuroinformatics, 2004 Sep 15; 2(3). PMID: 15365196
Review.
Modularity from fluctuations in random graphs and complex networks.
Roger Guimerà, Marta Sales-Pardo, Luís A Nunes Amaral.
Phys Rev E Stat Nonlin Soft Matter Phys, 2004 Sep 28; 70(2 Pt 2). PMID: 15447530    Free PMC article.
Entropy of dialogues creates coherent structures in e-mail traffic.
Jean-Pierre Eckmann, Elisha Moses, Danilo Sergi.
Proc Natl Acad Sci U S A, 2004 Sep 28; 101(40). PMID: 15448210    Free PMC article.
Polynomial epidemics and clustering in contact networks.
Balázs Szendroi, Gábor Csányi.
Proc Biol Sci, 2004 Oct 27; 271 Suppl 5. PMID: 15504019    Free PMC article.
Emergence of complex dynamics in a simple model of signaling networks.
Luís A N Amaral, Albert Díaz-Guilera, +2 authors, Lewis A Lipsitz.
Proc Natl Acad Sci U S A, 2004 Oct 27; 101(44). PMID: 15505227    Free PMC article.
Motifs in brain networks.
Olaf Sporns, Rolf Kötter.
PLoS Biol, 2004 Oct 29; 2(11). PMID: 15510229    Free PMC article.
Highly Cited.
How biologically relevant are interaction-based modules in protein networks?
Juan F Poyatos, Laurence D Hurst.
Genome Biol, 2004 Nov 13; 5(11). PMID: 15535869    Free PMC article.
A glossary of terms for navigating the field of social network analysis.
Penelope Hawe, Cynthia Webster, Alan Shiell.
J Epidemiol Community Health, 2004 Nov 18; 58(12). PMID: 15547054    Free PMC article.
Review.
Structure of cortical microcircuit theory.
Csaba Földy, Jonas Dyhrfjeld-Johnsen, Ivan Soltesz.
J Physiol, 2004 Nov 20; 562(Pt 1). PMID: 15550461    Free PMC article.
Review.
Discriminative topological features reveal biological network mechanisms.
Manuel Middendorf, Etay Ziv, +6 authors, Chris Wiggins.
BMC Bioinformatics, 2004 Nov 24; 5. PMID: 15555081    Free PMC article.
A Drosophila protein-interaction map centered on cell-cycle regulators.
Clement A Stanyon, Guozhen Liu, +6 authors, Russell L Finley.
Genome Biol, 2004 Dec 04; 5(12). PMID: 15575970    Free PMC article.
The topological relationship between the large-scale attributes and local interaction patterns of complex networks.
A Vázquez, R Dobrin, +3 authors, A-L Barabási.
Proc Natl Acad Sci U S A, 2004 Dec 16; 101(52). PMID: 15598746    Free PMC article.
Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.
Maya R Said, Thomas J Begley, +2 authors, Leona D Samson.
Proc Natl Acad Sci U S A, 2004 Dec 21; 101(52). PMID: 15608068    Free PMC article.
Structural comparison of metabolic networks in selected single cell organisms.
Dongxiao Zhu, Zhaohui S Qin.
BMC Bioinformatics, 2005 Jan 15; 6. PMID: 15649332    Free PMC article.
Assortative interactions and social networks in fish.
D P Croft, R James, +3 authors, J Krause.
Oecologia, 2005 Feb 01; 143(2). PMID: 15682346
Lasting impressions: motifs in protein-protein maps may provide footprints of evolutionary events.
J Jeremy Rice, Aaron Kershenbaum, Gustavo Stolovitzky.
Proc Natl Acad Sci U S A, 2005 Feb 25; 102(9). PMID: 15728355    Free PMC article.
Highly nonrandom features of synaptic connectivity in local cortical circuits.
Sen Song, Per Jesper Sjöström, +2 authors, Dmitri B Chklovskii.
PLoS Biol, 2005 Mar 02; 3(3). PMID: 15737062    Free PMC article.
Highly Cited.
Three-dimensional cell cycle model with distributed transcription and translation.
K J Rounseville, P C Chau.
Med Biol Eng Comput, 2005 Mar 04; 43(1). PMID: 15742735
A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.
Jana Hackbusch, Klaus Richter, +2 authors, Joachim F Uhrig.
Proc Natl Acad Sci U S A, 2005 Mar 23; 102(13). PMID: 15781858    Free PMC article.
Evolutionary cores of domain co-occurrence networks.
Stefan Wuchty, Eivind Almaas.
BMC Evol Biol, 2005 Mar 25; 5. PMID: 15788102    Free PMC article.
Social networks in the guppy (Poecilia reticulata).
Darren P Croft, Jens Krause, Richard James.
Proc Biol Sci, 2005 Apr 02; 271 Suppl 6. PMID: 15801620    Free PMC article.
Team assembly mechanisms determine collaboration network structure and team performance.
Roger Guimerà, Brian Uzzi, Jarrett Spiro, Luís A Nunes Amaral.
Science, 2005 Apr 30; 308(5722). PMID: 15860629    Free PMC article.
Toward predictive models of mammalian cells.
Avi Ma'ayan, Robert D Blitzer, Ravi Iyengar.
Annu Rev Biophys Biomol Struct, 2005 May 05; 34. PMID: 15869393    Free PMC article.
Review.
The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles.
R Guimerà, S Mossa, A Turtschi, L A N Amaral.
Proc Natl Acad Sci U S A, 2005 May 25; 102(22). PMID: 15911778    Free PMC article.
Highly Cited.
Synchronous neural activity in scale-free network models versus random network models.
Geoffrey Grinstein, Ralph Linsker.
Proc Natl Acad Sci U S A, 2005 Jul 07; 102(28). PMID: 15998732    Free PMC article.
Disease contact tracing in random and clustered networks.
Istvan Z Kiss, Darren M Green, Rowland R Kao.
Proc Biol Sci, 2005 Jul 12; 272(1570). PMID: 16006334    Free PMC article.
Dynamic pattern evolution on scale-free networks.
Haijun Zhou, Reinhard Lipowsky.
Proc Natl Acad Sci U S A, 2005 Jul 12; 102(29). PMID: 16006533    Free PMC article.
Receptor-receptor interactions, receptor mosaics, and basic principles of molecular network organization: possible implications for drug development.
Luigi F Agnati, Alexander O Tarakanov, +2 authors, Diego Guidolin.
J Mol Neurosci, 2005 Jul 14; 26(2-3). PMID: 16012193
Review.
A tool for filtering information in complex systems.
M Tumminello, T Aste, T Di Matteo, R N Mantegna.
Proc Natl Acad Sci U S A, 2005 Jul 20; 102(30). PMID: 16027373    Free PMC article.
High-betweenness proteins in the yeast protein interaction network.
Maliackal Poulo Joy, Amy Brock, Donald E Ingber, Sui Huang.
J Biomed Biotechnol, 2005 Jul 28; 2005(2). PMID: 16046814    Free PMC article.
Highly Cited.
Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks.
Nicole E Baldwin, Elissa J Chesler, +4 authors, Bing Zhang.
J Biomed Biotechnol, 2005 Jul 28; 2005(2). PMID: 16046823    Free PMC article.
Geographic routing in social networks.
David Liben-Nowell, Jasmine Novak, +2 authors, Andrew Tomkins.
Proc Natl Acad Sci U S A, 2005 Aug 06; 102(33). PMID: 16081538    Free PMC article.
Estimating brain functional connectivity with sparse multivariate autoregression.
Pedro A Valdés-Sosa, Jose M Sánchez-Bornot, +4 authors, Erick Canales-Rodríguez.
Philos Trans R Soc Lond B Biol Sci, 2005 Aug 10; 360(1457). PMID: 16087441    Free PMC article.
Dynamics of a neural system with a multiscale architecture.
Michael Breakspear, Cornelis J Stam.
Philos Trans R Soc Lond B Biol Sci, 2005 Aug 10; 360(1457). PMID: 16087448    Free PMC article.
Review.
Formation of regulatory patterns during signal propagation in a Mammalian cellular network.
Avi Ma'ayan, Sherry L Jenkins, +11 authors, Ravi Iyengar.
Science, 2005 Aug 16; 309(5737). PMID: 16099987    Free PMC article.
Highly Cited.
Improved prediction of critical residues for protein function based on network and phylogenetic analyses.
Boris Thibert, Dale E Bredesen, Gabriel del Rio.
BMC Bioinformatics, 2005 Aug 30; 6. PMID: 16124876    Free PMC article.
Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes.
Stephan Steigele, Kay Nieselt.
Nucleic Acids Res, 2005 Sep 09; 33(16). PMID: 16147987    Free PMC article.
Asymptotically scale-invariant occupancy of phase space makes the entropy Sq extensive.
Constantino Tsallis, Murray Gell-Mann, Yuzuru Sato.
Proc Natl Acad Sci U S A, 2005 Oct 19; 102(43). PMID: 16230624    Free PMC article.
SpectralNET--an application for spectral graph analysis and visualization.
Joshua J Forman, Paul A Clemons, Stuart L Schreiber, Stephen J Haggarty.
BMC Bioinformatics, 2005 Oct 21; 6. PMID: 16236170    Free PMC article.
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.
Ping Ye, Brian D Peyser, Forrest A Spencer, Joel S Bader.
BMC Bioinformatics, 2005 Nov 15; 6. PMID: 16283923    Free PMC article.
The effect of social mixing controls on the spread of smallpox--a two-level model.
Moshe Kress.
Health Care Manag Sci, 2005 Dec 29; 8(4). PMID: 16379411
Review.
Segregation of the brain into gray and white matter: a design minimizing conduction delays.
Quan Wen, Dmitri B Chklovskii.
PLoS Comput Biol, 2006 Jan 04; 1(7). PMID: 16389299    Free PMC article.
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.
Tim Van den Bulcke, Koenraad Van Leemput, +5 authors, Kathleen Marchal.
BMC Bioinformatics, 2006 Jan 28; 7. PMID: 16438721    Free PMC article.
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
Wen-Yu Chung, Reka Albert, +2 authors, Kateryna D Makova.
BMC Bioinformatics, 2006 Jan 31; 7. PMID: 16441884    Free PMC article.
Network oscillations: emerging computational principles.
Terrence J Sejnowski, Ole Paulsen.
J Neurosci, 2006 Feb 10; 26(6). PMID: 16467514    Free PMC article.
Review.
The origins and evolution of functional modules: lessons from protein complexes.
Jose B Pereira-Leal, Emmanuel D Levy, Sarah A Teichmann.
Philos Trans R Soc Lond B Biol Sci, 2006 Mar 10; 361(1467). PMID: 16524839    Free PMC article.
Review.
Cognitive ornithology: the evolution of avian intelligence.
Nathan J Emery.
Philos Trans R Soc Lond B Biol Sci, 2006 Mar 24; 361(1465). PMID: 16553307    Free PMC article.
Review.
Functional partitioning of yeast co-expression networks after genome duplication.
Gavin C Conant, Kenneth H Wolfe.
PLoS Biol, 2006 Mar 25; 4(4). PMID: 16555924    Free PMC article.
Protein interaction networks in plants.
Joachim F Uhrig.
Planta, 2006 Apr 01; 224(4). PMID: 16575597
Review.
Winners don't take all: Characterizing the competition for links on the web.
David M Pennock, Gary W Flake, +2 authors, C Lee Giles.
Proc Natl Acad Sci U S A, 2006 Apr 01; 99(8). PMID: 16578867    Free PMC article.
The evolution of parasite manipulation of host dispersal.
Sébastien Lion, Minus van Baalen, William G Wilson.
Proc Biol Sci, 2006 Apr 08; 273(1590). PMID: 16600882    Free PMC article.
The brainstem reticular formation is a small-world, not scale-free, network.
M D Humphries, K Gurney, T J Prescott.
Proc Biol Sci, 2006 Apr 18; 273(1585). PMID: 16615219    Free PMC article.
Highly Cited.
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.
Yong Zhang, Shaojuan Li, +7 authors, Runsheng Chen.
BMC Bioinformatics, 2006 May 11; 7. PMID: 16684350    Free PMC article.
Topology and weights in a protein domain interaction network--a novel way to predict protein interactions.
Stefan Wuchty.
BMC Genomics, 2006 May 24; 7. PMID: 16716232    Free PMC article.
Modularity and community structure in networks.
M E J Newman.
Proc Natl Acad Sci U S A, 2006 May 26; 103(23). PMID: 16723398    Free PMC article.
Highly Cited.
A simple rule for the evolution of cooperation on graphs and social networks.
Hisashi Ohtsuki, Christoph Hauert, Erez Lieberman, Martin A Nowak.
Nature, 2006 May 26; 441(7092). PMID: 16724065    Free PMC article.
Highly Cited.
Residues crucial for maintaining short paths in network communication mediate signaling in proteins.
Antonio del Sol, Hirotomo Fujihashi, Dolors Amoros, Ruth Nussinov.
Mol Syst Biol, 2006 Jun 02; 2. PMID: 16738564    Free PMC article.
Highly Cited.
The proteomes of neurotransmitter receptor complexes form modular networks with distributed functionality underlying plasticity and behaviour.
Andrew J Pocklington, Mark Cumiskey, J Douglas Armstrong, Seth G N Grant.
Mol Syst Biol, 2006 Jun 02; 2. PMID: 16738568    Free PMC article.
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.
Teresa Reguly, Ashton Breitkreutz, +17 authors, Mike Tyers.
J Biol, 2006 Jun 10; 5(4). PMID: 16762047    Free PMC article.
Highly Cited.
From components to regulatory motifs in signalling networks.
Avi Ma'ayan, Ravi Iyengar.
Brief Funct Genomic Proteomic, 2006 Jun 14; 5(1). PMID: 16769680    Free PMC article.
Review.
Network motif identification in stochastic networks.
Rui Jiang, Zhidong Tu, Ting Chen, Fengzhu Sun.
Proc Natl Acad Sci U S A, 2006 Jun 14; 103(25). PMID: 16769903    Free PMC article.
Spatial network structure and amphibian persistence in stochastic environments.
Miguel A Fortuna, Carola Gómez-Rodríguez, Jordi Bascompte.
Proc Biol Sci, 2006 Jun 17; 273(1592). PMID: 16777733    Free PMC article.
Pair-level approximations to the spatio-temporal dynamics of epidemics on asymmetric contact networks.
Kieran J Sharkey, Carmen Fernandez, +4 authors, Roger G Bowers.
J Math Biol, 2006 Jun 23; 53(1). PMID: 16791650
The cognitive phenotype of Down syndrome: insights from intracellular network analysis.
Avi Ma'ayan, Katheleen Gardiner, Ravi Iyengar.
NeuroRx, 2006 Jul 04; 3(3). PMID: 16815222    Free PMC article.
Review.
Demographic structure and pathogen dynamics on the network of livestock movements in Great Britain.
R R Kao, L Danon, D M Green, I Z Kiss.
Proc Biol Sci, 2006 Jul 19; 273(1597). PMID: 16846906    Free PMC article.
Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems.
Marcus Kaiser, Claus C Hilgetag.
PLoS Comput Biol, 2006 Jul 20; 2(7). PMID: 16848638    Free PMC article.
Highly Cited.
Networks and epidemic models.
Matt J Keeling, Ken T D Eames.
J R Soc Interface, 2006 Jul 20; 2(4). PMID: 16849187    Free PMC article.
Highly Cited. Review.
Complex networks and simple models in biology.
Eric de Silva, Michael P H Stumpf.
J R Soc Interface, 2006 Jul 20; 2(5). PMID: 16849202    Free PMC article.
Review.
Space and contact networks: capturing the locality of disease transmission.
Paul E Parham, Neil M Ferguson.
J R Soc Interface, 2006 Jul 20; 3(9). PMID: 16849245    Free PMC article.
The replicator equation on graphs.
Hisashi Ohtsuki, Martin A Nowak.
J Theor Biol, 2006 Jul 25; 243(1). PMID: 16860343    Free PMC article.
Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families.
Antonio del Sol, Hirotomo Fujihashi, Dolors Amoros, Ruth Nussinov.
Protein Sci, 2006 Aug 03; 15(9). PMID: 16882992    Free PMC article.
Mixing patterns and the spread of close-contact infectious diseases.
W J Edmunds, G Kafatos, J Wallinga, J R Mossong.
Emerg Themes Epidemiol, 2006 Aug 16; 3. PMID: 16907980    Free PMC article.
Hierarchical modularity of nested bow-ties in metabolic networks.
Jing Zhao, Hong Yu, +2 authors, Yi-Xue Li.
BMC Bioinformatics, 2006 Aug 19; 7. PMID: 16916470    Free PMC article.
Transcriptional coordination of the metabolic network in Arabidopsis.
Hairong Wei, Staffan Persson, +5 authors, Ann Loraine.
Plant Physiol, 2006 Aug 22; 142(2). PMID: 16920875    Free PMC article.
An integrate-and-fire model for synchronized bursting in a network of cultured cortical neurons.
D A French, E I Gruenstein.
J Comput Neurosci, 2006 Sep 05; 21(3). PMID: 16951925
Network metrics reveal differences in social organization between two fission-fusion species, Grevy's zebra and onager.
Siva R Sundaresan, Ilya R Fischhoff, Jonathan Dushoff, Daniel I Rubenstein.
Oecologia, 2006 Sep 12; 151(1). PMID: 16964497
Global similarity and local divergence in human and mouse gene co-expression networks.
Panayiotis Tsaparas, Leonardo Mariño-Ramírez, +2 authors, I King Jordan.
BMC Evol Biol, 2006 Sep 14; 6. PMID: 16968540    Free PMC article.
Topological properties of protein-protein and metabolic interaction networks of Drosophila melanogaster.
Thanigaimani Rajarathinam, Yen Han Lin.
Genomics Proteomics Bioinformatics, 2006 Sep 15; 4(2). PMID: 16970548    Free PMC article.
The network of sheep movements within Great Britain: Network properties and their implications for infectious disease spread.
Istvan Z Kiss, Darren M Green, Rowland R Kao.
J R Soc Interface, 2006 Sep 15; 3(10). PMID: 16971335    Free PMC article.
Genomic analysis of the hierarchical structure of regulatory networks.
Haiyuan Yu, Mark Gerstein.
Proc Natl Acad Sci U S A, 2006 Sep 28; 103(40). PMID: 17003135    Free PMC article.
Highly Cited.
Network frailty and the geometry of herd immunity.
Matthew J Ferrari, Shweta Bansal, Lauren A Meyers, Ottar N Bjørnstad.
Proc Biol Sci, 2006 Oct 04; 273(1602). PMID: 17015324    Free PMC article.
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
Brian T Naughton, Eugene Fratkin, Serafim Batzoglou, Douglas L Brutlag.
Nucleic Acids Res, 2006 Oct 17; 34(20). PMID: 17041233    Free PMC article.
On modelling the immune system as a complex system.
E Ahmed, A H Hashish.
Theory Biosci, 2006 Oct 19; 124(3-4). PMID: 17046369
A 'small-world-like' model for comparing interventions aimed at preventing and controlling influenza pandemics.
Fabrice Carrat, Julie Luong, +3 authors, Hans Wackernagel.
BMC Med, 2006 Oct 25; 4. PMID: 17059593    Free PMC article.
The effects of incomplete protein interaction data on structural and evolutionary inferences.
Eric de Silva, Thomas Thorne, +4 authors, Michael P H Stumpf.
BMC Biol, 2006 Nov 04; 4. PMID: 17081312    Free PMC article.
SigFlux: a novel network feature to evaluate the importance of proteins in signal transduction networks.
Wei Liu, Dong Li, +2 authors, Fuchu He.
BMC Bioinformatics, 2006 Nov 30; 7. PMID: 17129367    Free PMC article.
The interaction networks of structured RNAs.
A Lescoute, E Westhof.
Nucleic Acids Res, 2006 Dec 01; 34(22). PMID: 17135184    Free PMC article.
Inferring topology from clustering coefficients in protein-protein interaction networks.
Caroline C Friedel, Ralf Zimmer.
BMC Bioinformatics, 2006 Dec 02; 7. PMID: 17137490    Free PMC article.
Small worlds inside big brains.
Olaf Sporns, Christopher J Honey.
Proc Natl Acad Sci U S A, 2006 Dec 13; 103(51). PMID: 17159140    Free PMC article.
Adaptive reconfiguration of fractal small-world human brain functional networks.
Danielle S Bassett, Andreas Meyer-Lindenberg, +2 authors, Edward Bullmore.
Proc Natl Acad Sci U S A, 2006 Dec 13; 103(51). PMID: 17159150    Free PMC article.
Highly Cited.
Hydrophobic, hydrophilic, and charged amino acid networks within protein.
Md Aftabuddin, S Kundu.
Biophys J, 2006 Dec 19; 93(1). PMID: 17172302    Free PMC article.
Evolution, interactions, and biological networks.
Joshua S Weitz, Philip N Benfey, Ned S Wingreen.
PLoS Biol, 2007 Jan 18; 5(1). PMID: 17227140    Free PMC article.
Discovering biological guilds through topological abstraction.
Gil Alterovitz, Marco F Ramoni.
AMIA Annu Symp Proc, 2007 Jan 24;. PMID: 17238291    Free PMC article.
Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission.
Ted Cohen, Caroline Colijn, Bryson Finklea, Megan Murray.
J R Soc Interface, 2007 Jan 26; 4(14). PMID: 17251134    Free PMC article.
Efficiency and cost of economical brain functional networks.
Sophie Achard, Ed Bullmore.
PLoS Comput Biol, 2007 Feb 06; 3(2). PMID: 17274684    Free PMC article.
Highly Cited.
Maintenance of endemicity in urban environments: a hypothesis linking risk, network structure and geography.
R Rothenberg.
Sex Transm Infect, 2007 Feb 07; 83(1). PMID: 17283360    Free PMC article.
Review.
Targeted social distancing design for pandemic influenza.
Robert J Glass, Laura M Glass, Walter E Beyeler, H Jason Min.
Emerg Infect Dis, 2007 Feb 08; 12(11). PMID: 17283616    Free PMC article.
Highly Cited.
Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication.
Ali Rana Atilgan, Deniz Turgut, Canan Atilgan.
Biophys J, 2007 Feb 13; 92(9). PMID: 17293401    Free PMC article.
Global mapping of gene/protein interactions in PubMed abstracts: a framework and an experiment with P53 interactions.
Xin Li, Hsinchun Chen, +2 authors, Jesse D Martinez.
J Biomed Inform, 2007 Feb 24; 40(5). PMID: 17317333    Free PMC article.
Functional taxonomy of bacterial hyperstructures.
Vic Norris, Tanneke den Blaauwen, +10 authors, Kirsten Skarstad.
Microbiol Mol Biol Rev, 2007 Mar 10; 71(1). PMID: 17347523    Free PMC article.
Review.
Lexico-semantic structure and the word-frequency effect in recognition memory.
Joseph D Monaco, L F Abbott, Michael J Kahana.
Learn Mem, 2007 Mar 14; 14(3). PMID: 17351146    Free PMC article.
Network-based prediction of protein function.
Roded Sharan, Igor Ulitsky, Ron Shamir.
Mol Syst Biol, 2007 Mar 14; 3. PMID: 17353930    Free PMC article.
Highly Cited. Review.
Predicting the connectivity of primate cortical networks from topological and spatial node properties.
Luciano da F Costa, Marcus Kaiser, Claus C Hilgetag.
BMC Syst Biol, 2007 Apr 06; 1. PMID: 17408506    Free PMC article.
Identification of functional modules using network topology and high-throughput data.
Igor Ulitsky, Ron Shamir.
BMC Syst Biol, 2007 Apr 06; 1. PMID: 17408515    Free PMC article.
Highly Cited.
Evolution of protein complexes by duplication of homomeric interactions.
Jose B Pereira-Leal, Emmanuel D Levy, Christel Kamp, Sarah A Teichmann.
Genome Biol, 2007 Apr 07; 8(4). PMID: 17411433    Free PMC article.
Variability v.s. synchronicity of neuronal activity in local cortical network models with different wiring topologies.
Katsunori Kitano, Tomoki Fukai.
J Comput Neurosci, 2007 Apr 07; 23(2). PMID: 17415629
A network perspective on the topological importance of enzymes and their phylogenetic conservation.
Wei-chung Liu, Wen-hsien Lin, +3 authors, Ming-jing Hwang.
BMC Bioinformatics, 2007 Apr 12; 8. PMID: 17425808    Free PMC article.
Introduction. Modelling natural action selection.
Tony J Prescott, Joanna J Bryson, Anil K Seth.
Philos Trans R Soc Lond B Biol Sci, 2007 Apr 13; 362(1485). PMID: 17428783    Free PMC article.
Review.
neuroConstruct: a tool for modeling networks of neurons in 3D space.
Padraig Gleeson, Volker Steuber, R Angus Silver.
Neuron, 2007 Apr 20; 54(2). PMID: 17442244    Free PMC article.
Spectrum of genetic diversity and networks of clonal organisms.
Alejandro F Rozenfeld, Sophie Arnaud-Haond, +4 authors, Carlos M Duarte.
J R Soc Interface, 2007 May 03; 4(17). PMID: 17472906    Free PMC article.
Building epidemiological models from R0: an implicit treatment of transmission in networks.
Juan Pablo Aparicio, Mercedes Pascual.
Proc Biol Sci, 2007 May 04; 274(1609). PMID: 17476770    Free PMC article.
Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.
Timothy E Reddy, Charles DeLisi, Boris E Shakhnovich.
PLoS Comput Biol, 2007 May 16; 3(5). PMID: 17500587    Free PMC article.
Mixture models and exploratory analysis in networks.
M E J Newman, E A Leicht.
Proc Natl Acad Sci U S A, 2007 May 26; 104(23). PMID: 17525150    Free PMC article.
Unequal evolutionary conservation of human protein interactions in interologous networks.
Kevin R Brown, Igor Jurisica.
Genome Biol, 2007 May 31; 8(5). PMID: 17535438    Free PMC article.
Highly Cited.
The relevance of social epidemiology in HIV/AIDS and drug abuse research.
Richard Rothenberg.
Am J Prev Med, 2007 Aug 19; 32(6 Suppl). PMID: 17543705    Free PMC article.
Review.
Understanding network concepts in modules.
Jun Dong, Steve Horvath.
BMC Syst Biol, 2007 Jun 06; 1. PMID: 17547772    Free PMC article.
Highly Cited.
Network structure of cerebral cortex shapes functional connectivity on multiple time scales.
Christopher J Honey, Rolf Kötter, Michael Breakspear, Olaf Sporns.
Proc Natl Acad Sci U S A, 2007 Jun 06; 104(24). PMID: 17548818    Free PMC article.
Highly Cited.
The environmental fate of organic pollutants through the global microbial metabolism.
Manuel J Gómez, Florencio Pazos, +2 authors, Alfonso Valencia.
Mol Syst Biol, 2007 Jun 07; 3. PMID: 17551509    Free PMC article.
The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network.
Duygu Balcan, Alkan Kabakçioğlu, Muhittin Mungan, Ayşe Erzan.
PLoS One, 2007 Jun 07; 2(6). PMID: 17551581    Free PMC article.
Distinct brain networks for adaptive and stable task control in humans.
Nico U F Dosenbach, Damien A Fair, +9 authors, Steven E Petersen.
Proc Natl Acad Sci U S A, 2007 Jun 20; 104(26). PMID: 17576922    Free PMC article.
Highly Cited.
Predicting fate from early connectivity in a social network.
David B McDonald.
Proc Natl Acad Sci U S A, 2007 Jun 20; 104(26). PMID: 17576933    Free PMC article.
Mapping human whole-brain structural networks with diffusion MRI.
Patric Hagmann, Maciej Kurant, +4 authors, Jean-Philippe Thiran.
PLoS One, 2007 Jul 06; 2(7). PMID: 17611629    Free PMC article.
Highly Cited.
Topography in the preoptic region: differential regulation of appetitive and consummatory male sexual behaviors.
Jacques Balthazart, Gregory F Ball.
Front Neuroendocrinol, 2007 Jul 13; 28(4). PMID: 17624413    Free PMC article.
Review.
Identifying directed links in large scale functional networks: application to brain fMRI.
Guillermo A Cecchi, A Ravishankar Rao, +3 authors, Dante R Chialvo.
BMC Cell Biol, 2007 Aug 23; 8 Suppl 1. PMID: 17634095    Free PMC article.
When individual behaviour matters: homogeneous and network models in epidemiology.
Shweta Bansal, Bryan T Grenfell, Lauren Ancel Meyers.
J R Soc Interface, 2007 Jul 21; 4(16). PMID: 17640863    Free PMC article.
Highly Cited.
Functional atlas of the integrin adhesome.
Ronen Zaidel-Bar, Shalev Itzkovitz, +2 authors, Benjamin Geiger.
Nat Cell Biol, 2007 Aug 03; 9(8). PMID: 17671451    Free PMC article.
Highly Cited.
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
Gregory D Amoutzias, Elgar E Pichler, +6 authors, Stephen G Oliver.
BMC Syst Biol, 2007 Aug 04; 1. PMID: 17672894    Free PMC article.
Influence of degree correlations on network structure and stability in protein-protein interaction networks.
Caroline C Friedel, Ralf Zimmer.
BMC Bioinformatics, 2007 Aug 11; 8. PMID: 17688687    Free PMC article.
Impacts of yeast metabolic network structure on enzyme evolution.
Chenqi Lu, Ze Zhang, +2 authors, Z W Luo.
Genome Biol, 2007 Aug 19; 8(8). PMID: 17692134    Free PMC article.
Properties of the organization of memory for people: evidence from dream reports.
Richard Schweickert.
Psychon Bull Rev, 2007 Aug 19; 14(2). PMID: 17694912
Disease dynamics over very different time-scales: foot-and-mouth disease and scrapie on the network of livestock movements in the UK.
Rowland R Kao, Darren M Green, Jethro Johnson, Istvan Z Kiss.
J R Soc Interface, 2007 Aug 19; 4(16). PMID: 17698478    Free PMC article.
Correlation between structure and temperature in prokaryotic metabolic networks.
Kazuhiro Takemoto, Jose C Nacher, Tatsuya Akutsu.
BMC Bioinformatics, 2007 Aug 23; 8. PMID: 17711568    Free PMC article.
Susceptible-infected-recovered epidemics in dynamic contact networks.
Erik Volz, Lauren Ancel Meyers.
Proc Biol Sci, 2007 Sep 20; 274(1628). PMID: 17878137    Free PMC article.
Graph theoretical analysis of complex networks in the brain.
Cornelis J Stam, Jaap C Reijneveld.
Nonlinear Biomed Phys, 2007 Oct 03; 1(1). PMID: 17908336    Free PMC article.
Highly Cited.
Stochastic fluctuations in epidemics on networks.
M Simões, M M Telo da Gama, A Nunes.
J R Soc Interface, 2007 Oct 04; 5(22). PMID: 17911052    Free PMC article.
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases.
Seth I Berger, Jeremy M Posner, Avi Ma'ayan.
BMC Bioinformatics, 2007 Oct 06; 8. PMID: 17916244    Free PMC article.
Characterization of synchronization in interacting groups of oscillators: application to seizures.
István Z Kiss, Mark Quigg, +2 authors, John L Hudson.
Biophys J, 2007 Oct 09; 94(3). PMID: 17921222    Free PMC article.
Chaos breeds autonomy: connectionist design between bias and baby-sitting.
Cees van Leeuwen.
Cogn Process, 2007 Oct 10; 9(2). PMID: 17924155
Review.
Identification and classification of hubs in brain networks.
Olaf Sporns, Christopher J Honey, Rolf Kötter.
PLoS One, 2007 Oct 18; 2(10). PMID: 17940613    Free PMC article.
Highly Cited.
Nemo: a computational tool for analyzing nematode locomotion.
George D Tsibidis, Nektarios Tavernarakis.
BMC Neurosci, 2007 Oct 19; 8. PMID: 17941975    Free PMC article.
Network-based analysis of stochastic SIR epidemic models with random and proportionate mixing.
Eben Kenah, James M Robins.
J Theor Biol, 2007 Oct 24; 249(4). PMID: 17950362    Free PMC article.
Modelling the evolution of drug resistance in the presence of antiviral drugs.
Jianhong Wu, Ping Yan, Chris Archibald.
BMC Public Health, 2007 Oct 24; 7. PMID: 17953775    Free PMC article.
Contact rearrangements form coupled networks from local motions in allosteric proteins.
Michael D Daily, Tarak J Upadhyaya, Jeffrey J Gray.
Proteins, 2007 Oct 25; 71(1). PMID: 17957766    Free PMC article.
Construction, visualisation, and clustering of transcription networks from microarray expression data.
Tom C Freeman, Leon Goldovsky, +6 authors, Anton J Enright.
PLoS Comput Biol, 2007 Oct 31; 3(10). PMID: 17967053    Free PMC article.
Highly Cited.
Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling.
Anis Karimpour-Fard, Lawrence Hunter, Ryan T Gill.
BMC Genomics, 2007 Oct 31; 8. PMID: 17967189    Free PMC article.
Adaptive coevolutionary networks: a review.
Thilo Gross, Bernd Blasius.
J R Soc Interface, 2007 Nov 01; 5(20). PMID: 17971320    Free PMC article.
Highly Cited. Review.
Analysis of feedback loops and robustness in network evolution based on Boolean models.
Yung-Keun Kwon, Kwang-Hyun Cho.
BMC Bioinformatics, 2007 Nov 09; 8. PMID: 17988389    Free PMC article.
Experimental design for efficient identification of gene regulatory networks using sparse Bayesian models.
Florian Steinke, Matthias Seeger, Koji Tsuda.
BMC Syst Biol, 2007 Nov 21; 1. PMID: 18021391    Free PMC article.
Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution.
Xiangjun Du, Zhuo Wang, +4 authors, Taijiao Jiang.
Genome Res, 2007 Nov 23; 18(1). PMID: 18032723    Free PMC article.
Population synchrony in small-world networks.
Esa Ranta, Mike S Fowler, Veijo Kaitala.
Proc Biol Sci, 2007 Dec 07; 275(1633). PMID: 18055385    Free PMC article.
Contact tracing to control infectious disease: when enough is enough.
Benjamin Armbruster, Margaret L Brandeau.
Health Care Manag Sci, 2007 Dec 14; 10(4). PMID: 18074967    Free PMC article.
Boltzmann, Lotka and Volterra and spatial structural evolution: an integrated methodology for some dynamical systems.
Alan Wilson.
J R Soc Interface, 2007 Dec 14; 5(25). PMID: 18077242    Free PMC article.
Spectral plots and the representation and interpretation of biological data.
Anirban Banerjee, Jürgen Jost.
Theory Biosci, 2007 Dec 19; 126(1). PMID: 18087753
The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.
Robert Clarke, Habtom W Ressom, +4 authors, Yue Wang.
Nat Rev Cancer, 2007 Dec 22; 8(1). PMID: 18097463    Free PMC article.
Highly Cited. Review.
Cartography of complex networks: modules and universal roles.
Roger Guimerà, Luís A Nunes Amaral.
J Stat Mech, 2007 Dec 27; 2005(P02001). PMID: 18159217    Free PMC article.
Highly Cited.
Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity.
Corneliu Henegar, Joan Tordjman, +11 authors, Karine Clement.
Genome Biol, 2008 Jan 23; 9(1). PMID: 18208606    Free PMC article.
Highly Cited.
The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment.
Wagied Davids, Zhaolei Zhang.
BMC Evol Biol, 2008 Jan 26; 8. PMID: 18218112    Free PMC article.
GraphCrunch: a tool for large network analyses.
Tijana Milenković, Jason Lai, Natasa Przulj.
BMC Bioinformatics, 2008 Jan 31; 9. PMID: 18230190    Free PMC article.
The laboratory for perceptual dynamics at the RIKEN BSI.
Cees van Leeuwen.
Cogn Process, 2008 Jan 31; 6(3). PMID: 18231824
Identification of genetically mediated cortical networks: a multivariate study of pediatric twins and siblings.
J E Schmitt, R K Lenroot, +8 authors, J N Giedd.
Cereb Cortex, 2008 Feb 01; 18(8). PMID: 18234689    Free PMC article.
A dual-networks architecture of top-down control.
Nico U F Dosenbach, Damien A Fair, +2 authors, Steven E Petersen.
Trends Cogn Sci, 2008 Feb 12; 12(3). PMID: 18262825    Free PMC article.
Highly Cited. Review.
Implicitly activated memories are associated to general context cues.
Douglas L Nelson, Leilani B Goodmon, Umit Akirmak.
Mem Cognit, 2008 Feb 13; 35(8). PMID: 18265605
Cortical network dynamics during foot movements.
Fabrizio De Vico Fallani, Laura Astolfi, +9 authors, Fabio Babiloni.
Neuroinformatics, 2008 Feb 13; 6(1). PMID: 18266112
Deterministic epidemiological models at the individual level.
Kieran J Sharkey.
J Math Biol, 2008 Feb 15; 57(3). PMID: 18273619
Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves.
Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai.
PLoS One, 2008 Feb 21; 3(2). PMID: 18286179    Free PMC article.
Cellular substrates of action selection: a cluster of higher-order descending neurons shapes body posture and locomotion.
Karen A Mesce, Teresa Esch, William B Kristan.
J Comp Physiol A Neuroethol Sens Neural Behav Physiol, 2008 Feb 26; 194(5). PMID: 18297289
Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network.
Takeshi Hase, Yoshihito Niimura, Tsuguchika Kaminuma, Hiroshi Tanaka.
PLoS One, 2008 Feb 28; 3(2). PMID: 18301745    Free PMC article.
Dynamic social networks and the implications for the spread of infectious disease.
Jonathan M Read, Ken T D Eames, W John Edmunds.
J R Soc Interface, 2008 Mar 06; 5(26). PMID: 18319209    Free PMC article.
Highly Cited.
Quantifying the relationships among drug classes.
Jérôme Hert, Michael J Keiser, +2 authors, Brian K Shoichet.
J Chem Inf Model, 2008 Mar 14; 48(4). PMID: 18335977    Free PMC article.
Tracing information flow on a global scale using Internet chain-letter data.
David Liben-Nowell, Jon Kleinberg.
Proc Natl Acad Sci U S A, 2008 Mar 21; 105(12). PMID: 18353985    Free PMC article.
From time series to complex networks: the visibility graph.
Lucas Lacasa, Bartolo Luque, +2 authors, Juan Carlos Nuño.
Proc Natl Acad Sci U S A, 2008 Mar 26; 105(13). PMID: 18362361    Free PMC article.
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.
Christopher J Oldfield, Jingwei Meng, +3 authors, A Keith Dunker.
BMC Genomics, 2008 Apr 17; 9 Suppl 1. PMID: 18366598    Free PMC article.
Highly Cited.
Topological comparison of methods for predicting transcriptional cooperativity in yeast.
Daniel Aguilar, Baldo Oliva.
BMC Genomics, 2008 Mar 28; 9. PMID: 18366726    Free PMC article.
What can graph theory tell us about word learning and lexical retrieval?
Michael S Vitevitch.
J Speech Lang Hear Res, 2008 Mar 28; 51(2). PMID: 18367686    Free PMC article.
Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures.
Robert J Morgan, Ivan Soltesz.
Proc Natl Acad Sci U S A, 2008 Apr 01; 105(16). PMID: 18375756    Free PMC article.
Highly Cited.
Diversity and linkage disequilibrium analysis within a selected set of cultivated tomatoes.
Ralph van Berloo, Aiguo Zhu, +3 authors, Fred Antonis van Eeuwijk.
Theor Appl Genet, 2008 Apr 05; 117(1). PMID: 18389208    Free PMC article.
Learning and innovative elements of strategy adoption rules expand cooperative network topologies.
Shijun Wang, Máté S Szalay, Changshui Zhang, Peter Csermely.
PLoS One, 2008 Apr 10; 3(4). PMID: 18398453    Free PMC article.
A small world of neuronal synchrony.
Shan Yu, Debin Huang, Wolf Singer, Danko Nikolic.
Cereb Cortex, 2008 Apr 11; 18(12). PMID: 18400792    Free PMC article.
Exploring spatiotemporal organization of SCN circuits.
L Yan, I Karatsoreos, +4 authors, R Silver.
Cold Spring Harb Symp Quant Biol, 2008 Apr 19; 72. PMID: 18419312    Free PMC article.
Review.
M-BISON: microarray-based integration of data sources using networks.
Bernie J Daigle, Russ B Altman.
BMC Bioinformatics, 2008 Apr 29; 9. PMID: 18439292    Free PMC article.
Network 'small-world-ness': a quantitative method for determining canonical network equivalence.
Mark D Humphries, Kevin Gurney.
PLoS One, 2008 May 01; 3(4). PMID: 18446219    Free PMC article.
Highly Cited.
An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006.
John M Lin, Jason W Bohland, +3 authors, Partha P Mitra.
PLoS One, 2008 May 01; 3(4). PMID: 18446237    Free PMC article.
Compilation and network analyses of cambrian food webs.
Jennifer A Dunne, Richard J Williams, +2 authors, Douglas H Erwin.
PLoS Biol, 2008 May 02; 6(4). PMID: 18447582    Free PMC article.
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.
Anatolij P Potapov, Björn Goemann, Edgar Wingender.
BMC Bioinformatics, 2008 May 06; 9. PMID: 18454847    Free PMC article.
Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth.
Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar.
Science, 2008 May 20; 320(5878). PMID: 18487186    Free PMC article.
Contribution of exploratory methods to the investigation of extended large-scale brain networks in functional MRI: methodologies, results, and challenges.
V Perlbarg, G Marrelec.
Int J Biomed Imaging, 2008 May 24; 2008. PMID: 18497865    Free PMC article.
A network model for activity-dependent sleep regulation.
Sandip Roy, James M Krueger, David M Rector, Yan Wan.
J Theor Biol, 2008 May 31; 253(3). PMID: 18511082    Free PMC article.
The Brain Connectivity Workshops: moving the frontiers of computational systems neuroscience.
Klaas Enno Stephan, Jorge J Riera, Gustavo Deco, Barry Horwitz.
Neuroimage, 2008 May 31; 42(1). PMID: 18511300    Free PMC article.
Proximity of intracellular regulatory networks to monotone systems.
A Ma'ayan, A Lipshtat, R Iyengar, E D Sontag.
IET Syst Biol, 2008 Jun 10; 2(3). PMID: 18537452    Free PMC article.
The relation between connection length and degree of connectivity in young adults: a DTI analysis.
John D Lewis, Rebecca J Theilmann, Martin I Sereno, Jeanne Townsend.
Cereb Cortex, 2008 Jun 17; 19(3). PMID: 18552356    Free PMC article.
Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography.
Gaolang Gong, Yong He, +4 authors, Christian Beaulieu.
Cereb Cortex, 2008 Jun 24; 19(3). PMID: 18567609    Free PMC article.
Highly Cited.
Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code.
Shalev Itzkovitz, Leehod Baruch, Ehud Shapiro, Eran Segal.
Proc Natl Acad Sci U S A, 2008 Jun 28; 105(27). PMID: 18583478    Free PMC article.
Network analysis of intrinsic functional brain connectivity in Alzheimer's disease.
Kaustubh Supekar, Vinod Menon, +2 authors, Michael D Greicius.
PLoS Comput Biol, 2008 Jun 28; 4(6). PMID: 18584043    Free PMC article.
Highly Cited.
Identifying gene-disease associations using centrality on a literature mined gene-interaction network.
Arzucan Ozgür, Thuy Vu, Günes Erkan, Dragomir R Radev.
Bioinformatics, 2008 Jul 01; 24(13). PMID: 18586725    Free PMC article.
The topology of the bacterial co-conserved protein network and its implications for predicting protein function.
Anis Karimpour-Fard, Sonia M Leach, Lawrence E Hunter, Ryan T Gill.
BMC Genomics, 2008 Jul 02; 9. PMID: 18590549    Free PMC article.
Computer modelling of epilepsy.
William W Lytton.
Nat Rev Neurosci, 2008 Jul 03; 9(8). PMID: 18594562    Free PMC article.
Review.
Phase locking induces scale-free topologies in networks of coupled oscillators.
Irene Sendiña-Nadal, Javier M Buldú, Inmaculada Leyva, Stefano Boccaletti.
PLoS One, 2008 Jul 10; 3(7). PMID: 18612423    Free PMC article.
Classes of complex networks defined by role-to-role connectivity profiles.
Roger Guimerà, Marta Sales-Pardo, Luís A N Amaral.
Nat Phys, 2008 Jul 12; 3(1). PMID: 18618010    Free PMC article.
Intrinsic disorder in scaffold proteins: getting more from less.
Marc S Cortese, Vladimir N Uversky, A Keith Dunker.
Prog Biophys Mol Biol, 2008 Jul 16; 98(1). PMID: 18619997    Free PMC article.
Review.
Coordinated evolution of the hepatitis C virus.
D S Campo, Z Dimitrova, +2 authors, Y Khudyakov.
Proc Natl Acad Sci U S A, 2008 Jul 16; 105(28). PMID: 18621679    Free PMC article.
Revealing unique properties of the ribosome using a network based analysis.
Hilda David-Eden, Yael Mandel-Gutfreund.
Nucleic Acids Res, 2008 Jul 16; 36(14). PMID: 18625614    Free PMC article.
Effect of synaptic connectivity on long-range synchronization of fast cortical oscillations.
M Bazhenov, N F Rulkov, I Timofeev.
J Neurophysiol, 2008 Jul 18; 100(3). PMID: 18632897    Free PMC article.
Genes regulated by caloric restriction have unique roles within transcriptional networks.
William R Swindell.
Mech Ageing Dev, 2008 Jul 19; 129(10). PMID: 18634819    Free PMC article.
Bayesian approach to network modularity.
Jake M Hofman, Chris H Wiggins.
Phys Rev Lett, 2008 Jul 23; 100(25). PMID: 18643711    Free PMC article.
Behavioural phenotype affects social interactions in an animal network.
Thomas W Pike, Madhumita Samanta, Jan Lindström, Nick J Royle.
Proc Biol Sci, 2008 Jul 24; 275(1650). PMID: 18647713    Free PMC article.
Epidemic thresholds in dynamic contact networks.
Erik Volz, Lauren Ancel Meyers.
J R Soc Interface, 2008 Jul 31; 6(32). PMID: 18664429    Free PMC article.
Strategies for automated analysis of C. elegans locomotion.
Steven D Buckingham, David B Sattelle.
Invert Neurosci, 2008 Aug 09; 8(3). PMID: 18688666
Review.
Decompositional terminology translation using network analysis.
Chintan O Patel, James J Cimino.
AMIA Annu Symp Proc, 2008 Aug 13;. PMID: 18693904    Free PMC article.
Geometric interpretation of gene coexpression network analysis.
Steve Horvath, Jun Dong.
PLoS Comput Biol, 2008 Aug 16; 4(8). PMID: 18704157    Free PMC article.
Highly Cited.
The effect of opinion clustering on disease outbreaks.
Marcel Salathé, Sebastian Bonhoeffer.
J R Soc Interface, 2008 Aug 21; 5(29). PMID: 18713723    Free PMC article.
Probing the extent of randomness in protein interaction networks.
Joseph Ivanic, Anders Wallqvist, Jaques Reifman.
PLoS Comput Biol, 2008 Sep 05; 4(7). PMID: 18769589    Free PMC article.
Worldwide food recall patterns over an eleven month period: a country perspective.
Tamás Nepusz, Andrea Petróczi, Declan P Naughton.
BMC Public Health, 2008 Sep 12; 8. PMID: 18783627    Free PMC article.
Hierarchical organization of human cortical networks in health and schizophrenia.
Danielle S Bassett, Edward Bullmore, +3 authors, Andreas Meyer-Lindenberg.
J Neurosci, 2008 Sep 12; 28(37). PMID: 18784304    Free PMC article.
Highly Cited.
A structural approach for finding functional modules from large biological networks.
Mutlu Mete, Fusheng Tang, Xiaowei Xu, Nurcan Yuruk.
BMC Bioinformatics, 2008 Sep 20; 9 Suppl 9. PMID: 18793464    Free PMC article.
Association between co-authorship network and scientific productivity and impact indicators in academic medical research centers: a case study in Iran.
Reza Yousefi-Nooraie, Marjan Akbari-Kamrani, Robert A Hanneman, Arash Etemadi.
Health Res Policy Syst, 2008 Sep 18; 6. PMID: 18796149    Free PMC article.
Origin of structural difference in metabolic networks with respect to temperature.
Kazuhiro Takemoto, Tatsuya Akutsu.
BMC Syst Biol, 2008 Sep 24; 2. PMID: 18808702    Free PMC article.
Predicting protein linkages in bacteria: which method is best depends on task.
Anis Karimpour-Fard, Sonia M Leach, Ryan T Gill, Lawrence E Hunter.
BMC Bioinformatics, 2008 Sep 26; 9. PMID: 18816389    Free PMC article.
A genomewide functional network for the laboratory mouse.
Yuanfang Guan, Chad L Myers, +3 authors, Olga G Troyanskaya.
PLoS Comput Biol, 2008 Sep 27; 4(9). PMID: 18818725    Free PMC article.
Organization of excitable dynamics in hierarchical biological networks.
Mark Müller-Linow, Claus C Hilgetag, Marc-Thorsten Hütt.
PLoS Comput Biol, 2008 Sep 27; 4(9). PMID: 18818769    Free PMC article.
Phylogenetic distances are encoded in networks of interacting pathways.
Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A Buck.
Bioinformatics, 2008 Sep 30; 24(22). PMID: 18820265    Free PMC article.
Mining protein networks for synthetic genetic interactions.
Sri R Paladugu, Shan Zhao, Animesh Ray, Alpan Raval.
BMC Bioinformatics, 2008 Oct 11; 9. PMID: 18844977    Free PMC article.
The protein interaction network of the epithelial junctional complex: a system-level analysis.
Luca Paris, Gianfranco Bazzoni.
Mol Biol Cell, 2008 Oct 17; 19(12). PMID: 18923145    Free PMC article.
Social epidemiology and complex system dynamic modelling as applied to health behaviour and drug use research.
Sandro Galea, Chris Hall, George A Kaplan.
Int J Drug Policy, 2008 Oct 22; 20(3). PMID: 18930649    Free PMC article.
Insights into the organization of biochemical regulatory networks using graph theory analyses.
Avi Ma'ayan.
J Biol Chem, 2008 Oct 23; 284(9). PMID: 18940806    Free PMC article.
Review.
Spatio-temporal waves and targeted vaccination in recurrent epidemic network models.
Anna Litvak-Hinenzon, Lewi Stone.
J R Soc Interface, 2008 Oct 30; 6(38). PMID: 18957362    Free PMC article.
Integrating stochasticity and network structure into an epidemic model.
C E Dangerfield, J V Ross, M J Keeling.
J R Soc Interface, 2008 Nov 01; 6(38). PMID: 18974032    Free PMC article.
Shapley ratings in brain networks.
Rolf Kötter, Andrew T Reid, +2 authors, Olaf Sporns.
Front Neuroinform, 2008 Nov 01; 1. PMID: 18974797    Free PMC article.
Structural efficiency of percolated landscapes in flow networks.
M Angeles Serrano, Paolo De Los Rios.
PLoS One, 2008 Nov 06; 3(11). PMID: 18985157    Free PMC article.
Network hubs buffer environmental variation in Saccharomyces cerevisiae.
Sasha F Levy, Mark L Siegal.
PLoS Biol, 2008 Nov 07; 6(11). PMID: 18986213    Free PMC article.
Highly Cited.
From network heterogeneities to familiarity detection and hippocampal memory management.
Jane X Wang, Gina Poe, Michal Zochowski.
Phys Rev E Stat Nonlin Soft Matter Phys, 2008 Nov 13; 78(4 Pt 1). PMID: 18999453    Free PMC article.
Consciousness related neural events viewed as brain state space transitions.
Gerhard Werner.
Cogn Neurodyn, 2008 Nov 13; 3(1). PMID: 19003465    Free PMC article.
Firing synchronization and temporal order in noisy neuronal networks.
Xia Shi, Qingyun Wang, Qishao Lu.
Cogn Neurodyn, 2008 Nov 13; 2(3). PMID: 19003485    Free PMC article.
Robust emergence of small-world structure in networks of spiking neurons.
Hoi Fei Kwok, Peter Jurica, Antonino Raffone, Cees van Leeuwen.
Cogn Neurodyn, 2008 Nov 13; 1(1). PMID: 19003495    Free PMC article.
Topography, independent component analysis and dipole source analysis of movement related potentials.
Susan Pockett, Simon Whalen, Alexander V H McPhail, Walter J Freeman.
Cogn Neurodyn, 2008 Nov 13; 1(4). PMID: 19003503    Free PMC article.
Network analysis identifies weak and strong links in a metapopulation system.
Alejandro F Rozenfeld, Sophie Arnaud-Haond, +3 authors, Carlos M Duarte.
Proc Natl Acad Sci U S A, 2008 Nov 22; 105(48). PMID: 19022909    Free PMC article.
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.
Pawel Durek, Dirk Walther.
BMC Syst Biol, 2008 Nov 27; 2. PMID: 19032748    Free PMC article.
Diversity sustains an evolving network.
Ravi Mehrotra, Vikram Soni, Sanjay Jain.
J R Soc Interface, 2008 Nov 27; 6(38). PMID: 19033136    Free PMC article.
Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks.
Avi Ma'ayan, Guillermo A Cecchi, +3 authors, Gustavo Stolovitzky.
Proc Natl Acad Sci U S A, 2008 Nov 27; 105(49). PMID: 19033453    Free PMC article.
Network integration and graph analysis in mammalian molecular systems biology.
A Ma'ayan.
IET Syst Biol, 2008 Dec 03; 2(5). PMID: 19045817    Free PMC article.
Review.
Global analysis of protein damage by the lipid electrophile 4-hydroxy-2-nonenal.
Simona G Codreanu, Bing Zhang, +2 authors, Daniel C Liebler.
Mol Cell Proteomics, 2008 Dec 05; 8(4). PMID: 19054759    Free PMC article.
Superfamily phenomena and motifs of networks induced from time series.
Xiaoke Xu, Jie Zhang, Michael Small.
Proc Natl Acad Sci U S A, 2008 Dec 10; 105(50). PMID: 19064916    Free PMC article.
Sick and edgy: walk-counting as a metric of epidemic spreading on networks.
Dennis C Wylie, Wayne M Getz.
J R Soc Interface, 2008 Dec 19; 6(39). PMID: 19091685    Free PMC article.
WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath.
BMC Bioinformatics, 2008 Dec 31; 9. PMID: 19114008    Free PMC article.
Highly Cited.
Folding energy landscape and network dynamics of small globular proteins.
Naoto Hori, George Chikenji, R Stephen Berry, Shoji Takada.
Proc Natl Acad Sci U S A, 2008 Dec 31; 106(1). PMID: 19114654    Free PMC article.
SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.
Avi Ma'ayan, Sherry L Jenkins, +6 authors, Ravi Iyengar.
BMC Syst Biol, 2009 Jan 22; 3. PMID: 19154595    Free PMC article.
WiFi networks and malware epidemiology.
Hao Hu, Steven Myers, Vittoria Colizza, Alessandro Vespignani.
Proc Natl Acad Sci U S A, 2009 Jan 28; 106(5). PMID: 19171909    Free PMC article.
Protein domain organisation: adding order.
Sarah K Kummerfeld, Sarah A Teichmann.
BMC Bioinformatics, 2009 Jan 31; 10. PMID: 19178743    Free PMC article.
Efficient network reconstruction from dynamical cascades identifies small-world topology of neuronal avalanches.
Sinisa Pajevic, Dietmar Plenz.
PLoS Comput Biol, 2009 Jan 31; 5(1). PMID: 19180180    Free PMC article.
Towards predictive computational models of oncolytic virus therapy: basis for experimental validation and model selection.
Dominik Wodarz, Natalia Komarova.
PLoS One, 2009 Jan 31; 4(1). PMID: 19180240    Free PMC article.
Social contact networks and disease eradicability under voluntary vaccination.
Ana Perisic, Chris T Bauch.
PLoS Comput Biol, 2009 Feb 07; 5(2). PMID: 19197342    Free PMC article.
Towards safer, better healthcare: harnessing the natural properties of complex sociotechnical systems.
J Braithwaite, W B Runciman, A F Merry.
Qual Saf Health Care, 2009 Feb 11; 18(1). PMID: 19204130    Free PMC article.
Shadows of complexity: what biological networks reveal about epistasis and pleiotropy.
Anna L Tyler, Folkert W Asselbergs, Scott M Williams, Jason H Moore.
Bioessays, 2009 Feb 11; 31(2). PMID: 19204994    Free PMC article.
Prediction of interactions between HIV-1 and human proteins by information integration.
Oznur Tastan, Yanjun Qi, Jaime G Carbonell, Judith Klein-Seetharaman.
Pac Symp Biocomput, 2009 Feb 13;. PMID: 19209727    Free PMC article.
Interaction of cellular and network mechanisms in spatiotemporal pattern formation in neuronal networks.
Andrew Bogaard, Jack Parent, Michal Zochowski, Victoria Booth.
J Neurosci, 2009 Feb 13; 29(6). PMID: 19211875    Free PMC article.
Cortical hubs revealed by intrinsic functional connectivity: mapping, assessment of stability, and relation to Alzheimer's disease.
Randy L Buckner, Jorge Sepulcre, +6 authors, Keith A Johnson.
J Neurosci, 2009 Feb 13; 29(6). PMID: 19211893    Free PMC article.
Highly Cited.
Universality of rank-ordering distributions in the arts and sciences.
Gustavo Martínez-Mekler, Roberto Alvarez Martínez, +3 authors, Germinal Cocho.
PLoS One, 2009 Mar 12; 4(3). PMID: 19277122    Free PMC article.
Information processing in the transcriptional regulatory network of yeast: functional robustness.
Frank Emmert-Streib, Matthias Dehmer.
BMC Syst Biol, 2009 Mar 21; 3. PMID: 19298671    Free PMC article.
Broadband criticality of human brain network synchronization.
Manfred G Kitzbichler, Marie L Smith, Søren R Christensen, Ed Bullmore.
PLoS Comput Biol, 2009 Mar 21; 5(3). PMID: 19300473    Free PMC article.
Highly Cited.
Birds of a feather, or friend of a friend? Using exponential random graph models to investigate adolescent social networks.
Steven M Goodreau, James A Kitts, Martina Morris.
Demography, 2009 Apr 08; 46(1). PMID: 19348111    Free PMC article.
Specification of spatial relationships in directed graphs of cell signaling networks.
Azi Lipshtat, Susana R Neves, Ravi Iyengar.
Ann N Y Acad Sci, 2009 Apr 08; 1158. PMID: 19348631    Free PMC article.
Trade-offs between efficiency and robustness in bacterial metabolic networks are associated with niche breadth.
Melissa J Morine, Hong Gu, Ransom A Myers, Joseph P Bielawski.
J Mol Evol, 2009 Apr 15; 68(5). PMID: 19365645
The lexical restructuring hypothesis and graph theoretic analyses of networks based on random lexicons.
Thomas M Gruenenfelder, David B Pisoni.
J Speech Lang Hear Res, 2009 Apr 22; 52(3). PMID: 19380607    Free PMC article.
Uncovering intrinsic modular organization of spontaneous brain activity in humans.
Yong He, Jinhui Wang, +8 authors, Alan C Evans.
PLoS One, 2009 Apr 22; 4(4). PMID: 19381298    Free PMC article.
Highly Cited.
Perturbation of interaction networks for application to cancer therapy.
Adrian P Quayle, Asim S Siddiqui, Steven J M Jones.
Cancer Inform, 2007 Jan 01; 5. PMID: 19390668    Free PMC article.
Functional brain networks develop from a "local to distributed" organization.
Damien A Fair, Alexander L Cohen, +5 authors, Steven E Petersen.
PLoS Comput Biol, 2009 May 05; 5(5). PMID: 19412534    Free PMC article.
Highly Cited.
Genetic and environmental pathways to complex diseases.
Julia M Gohlke, Reuben Thomas, +6 authors, Christopher J Portier.
BMC Syst Biol, 2009 May 07; 3. PMID: 19416532    Free PMC article.
Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms.
Xiaotong Lin, Mei Liu, Xue-wen Chen.
BMC Bioinformatics, 2009 May 14; 10 Suppl 4. PMID: 19426453    Free PMC article.
Core and periphery structures in protein interaction networks.
Feng Luo, Bo Li, Xiu-Feng Wan, Richard H Scheuermann.
BMC Bioinformatics, 2009 May 14; 10 Suppl 4. PMID: 19426456    Free PMC article.
Impaired small-world efficiency in structural cortical networks in multiple sclerosis associated with white matter lesion load.
Yong He, Alain Dagher, +4 authors, Alan Evans.
Brain, 2009 May 15; 132(Pt 12). PMID: 19439423    Free PMC article.
Highly Cited.
Predicting invasion success in complex ecological networks.
Tamara N Romanuk, Yun Zhou, +3 authors, Neo D Martinez.
Philos Trans R Soc Lond B Biol Sci, 2009 May 20; 364(1524). PMID: 19451125    Free PMC article.
An approach to evaluate the topological significance of motifs and other patterns in regulatory networks.
Björn Goemann, Edgar Wingender, Anatolij P Potapov.
BMC Syst Biol, 2009 May 21; 3. PMID: 19454001    Free PMC article.
d-Omix: a mixer of generic protein domain analysis tools.
Duangdao Wichadakul, Somrak Numnark, Supawadee Ingsriswang.
Nucleic Acids Res, 2009 May 26; 37(Web Server issue). PMID: 19465389    Free PMC article.
Small-world network models of intercellular coupling predict enhanced synchronization in the suprachiasmatic nucleus.
Christina Vasalou, Erik D Herzog, Michael A Henson.
J Biol Rhythms, 2009 May 26; 24(3). PMID: 19465701    Free PMC article.
Uncovering the properties of energy-weighted conformation space networks with a hydrophobic-hydrophilic model.
Zaizhi Lai, Jiguo Su, Weizu Chen, Cunxin Wang.
Int J Mol Sci, 2009 May 27; 10(4). PMID: 19468340    Free PMC article.
KELLER: estimating time-varying interactions between genes.
Le Song, Mladen Kolar, Eric P Xing.
Bioinformatics, 2009 May 30; 25(12). PMID: 19477978    Free PMC article.
Hypergraphs and cellular networks.
Steffen Klamt, Utz-Uwe Haus, Fabian Theis.
PLoS Comput Biol, 2009 May 30; 5(5). PMID: 19478865    Free PMC article.
A big world inside small-world networks.
Zhihua Zhang, Jianzhi Zhang.
PLoS One, 2009 May 30; 4(5). PMID: 19479083    Free PMC article.
Symbiotic relationship between brain structure and dynamics.
Mikail Rubinov, Olaf Sporns, Cees van Leeuwen, Michael Breakspear.
BMC Neurosci, 2009 Jun 03; 10. PMID: 19486538    Free PMC article.
Brain anatomical network and intelligence.
Yonghui Li, Yong Liu, +4 authors, Tianzi Jiang.
PLoS Comput Biol, 2009 Jun 06; 5(5). PMID: 19492086    Free PMC article.
Highly Cited.
Human brain networks in health and disease.
Danielle S Bassett, Edward T Bullmore.
Curr Opin Neurol, 2009 Jun 06; 22(4). PMID: 19494774    Free PMC article.
Highly Cited. Review.
Collective dynamics of social annotation.
Ciro Cattuto, Alain Barrat, +2 authors, Vittorio Loreto.
Proc Natl Acad Sci U S A, 2009 Jun 10; 106(26). PMID: 19506244    Free PMC article.
Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids.
Sangtae Ahn, Richard T Wang, +4 authors, Desmond J Smith.
PLoS Comput Biol, 2009 Jun 13; 5(6). PMID: 19521529    Free PMC article.
A social network analysis of primate groups.
Claudia Kasper, Bernhard Voelkl.
Primates, 2009 Jun 18; 50(4). PMID: 19533270
A network of conserved damage survival pathways revealed by a genomic RNAi screen.
Dashnamoorthy Ravi, Amy M Wiles, +3 authors, Alexander J R Bishop.
PLoS Genet, 2009 Jun 23; 5(6). PMID: 19543366    Free PMC article.
Optimized null model for protein structure networks.
Tijana Milenković, Ioannis Filippis, Michael Lappe, Natasa Przulj.
PLoS One, 2009 Jun 27; 4(6). PMID: 19557139    Free PMC article.
Triangle network motifs predict complexes by complementing high-error interactomes with structural information.
Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder.
BMC Bioinformatics, 2009 Jun 30; 10. PMID: 19558694    Free PMC article.
What is stochastic resonance? Definitions, misconceptions, debates, and its relevance to biology.
Mark D McDonnell, Derek Abbott.
PLoS Comput Biol, 2009 Jun 30; 5(5). PMID: 19562010    Free PMC article.
Highly Cited. Review.
Models of epidemics: when contact repetition and clustering should be included.
Timo Smieszek, Lena Fiebig, Roland W Scholz.
Theor Biol Med Model, 2009 Jul 01; 6. PMID: 19563624    Free PMC article.
Clique-based data mining for related genes in a biomedical database.
Tsutomu Matsunaga, Chikara Yonemori, Etsuji Tomita, Masaaki Muramatsu.
BMC Bioinformatics, 2009 Jul 02; 10. PMID: 19566964    Free PMC article.
Correlations in spiking neuronal networks with distance dependent connections.
Birgit Kriener, Moritz Helias, Ad Aertsen, Stefan Rotter.
J Comput Neurosci, 2009 Jul 02; 27(2). PMID: 19568923    Free PMC article.
Categorical structure among shared features in networks of early-learned nouns.
Thomas T Hills, Mounir Maouene, +2 authors, Linda Smith.
Cognition, 2009 Jul 07; 112(3). PMID: 19576579    Free PMC article.
Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae.
Frank Emmert-Streib, Matthias Dehmer.
BMC Syst Biol, 2009 Jul 22; 3. PMID: 19619302    Free PMC article.
Development of large-scale functional brain networks in children.
Kaustubh Supekar, Mark Musen, Vinod Menon.
PLoS Biol, 2009 Jul 22; 7(7). PMID: 19621066    Free PMC article.
Highly Cited.
Ising-like dynamics in large-scale functional brain networks.
Daniel Fraiman, Pablo Balenzuela, Jennifer Foss, Dante R Chialvo.
Phys Rev E Stat Nonlin Soft Matter Phys, 2009 Aug 08; 79(6 Pt 1). PMID: 19658539    Free PMC article.
Signal propagation in cortical networks: a digital signal processing approach.
Francisco Aparecido Rodrigues, Luciano da Fontoura Costa.
Front Neuroinform, 2009 Aug 12; 3. PMID: 19668701    Free PMC article.
Looking for robust properties in the growth of an academic network: the case of the Uruguayan biological research community.
Alvaro Cabana, Eduardo Mizraji, Andrés Pomi, Juan Carlos Valle-Lisboa.
J Biol Phys, 2008 Apr 01; 34(1-2). PMID: 19669499    Free PMC article.
Network-assisted protein identification and data interpretation in shotgun proteomics.
Jing Li, Lisa J Zimmerman, +3 authors, Bing Zhang.
Mol Syst Biol, 2009 Aug 20; 5. PMID: 19690572    Free PMC article.
Functional neural network analysis in frontotemporal dementia and Alzheimer's disease using EEG and graph theory.
Willem de Haan, Yolande A L Pijnenburg, +4 authors, Cornelis J Stam.
BMC Neurosci, 2009 Aug 25; 10. PMID: 19698093    Free PMC article.
Disturbed functional brain networks and neurocognitive function in low-grade glioma patients: a graph theoretical analysis of resting-state MEG.
Ingeborg Bosma, Jaap C Reijneveld, +4 authors, Cornelis J Stam.
Nonlinear Biomed Phys, 2009 Aug 25; 3(1). PMID: 19698149    Free PMC article.
Network analysis of cell adhesion: Adhesomes as context-defined subnetworks.
Luca Paris, Elena Bononi, Gianfranco Bazzoni.
Commun Integr Biol, 2009 Aug 26; 2(1). PMID: 19704858    Free PMC article.
Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.
Wenhui Wang, Juan Nunez-Iglesias, Yihui Luan, Fengzhu Sun.
BMC Bioinformatics, 2009 Sep 05; 10. PMID: 19728875    Free PMC article.
Recent advances in the analysis of behavioural organization and interpretation as indicators of animal welfare.
Lucy Asher, Lisa M Collins, +3 authors, Dirk U Pfeiffer.
J R Soc Interface, 2009 Sep 11; 6(41). PMID: 19740922    Free PMC article.
Review.
Theoretical considerations on the topological organization of receptor mosaics.
Agnati Luigi Francesco, Fuxe Kjell, +2 authors, Guidolin Diego.
Curr Protein Pept Sci, 2009 Sep 16; 10(6). PMID: 19751189    Free PMC article.
Review.
The development, design, testing, refinement, simulation and application of an evaluation framework for communities of practice and social-professional networks.
Jeffrey Braithwaite, Johanna I Westbrook, +12 authors, Deborah Debono.
BMC Health Serv Res, 2009 Sep 17; 9. PMID: 19754942    Free PMC article.
A novel scoring approach for protein co-purification data reveals high interaction specificity.
Xueping Yu, Joseph Ivanic, Anders Wallqvist, Jaques Reifman.
PLoS Comput Biol, 2009 Sep 26; 5(9). PMID: 19779545    Free PMC article.
Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
Jiguang Wang, Shihua Zhang, +2 authors, Xiang-Sun Zhang.
PLoS Comput Biol, 2009 Sep 26; 5(9). PMID: 19779549    Free PMC article.
Altered anatomical network in early blindness revealed by diffusion tensor tractography.
Ni Shu, Yong Liu, +3 authors, Tianzi Jiang.
PLoS One, 2009 Sep 29; 4(9). PMID: 19784379    Free PMC article.
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions.
Renuka R Nayak, Michael Kearns, Richard S Spielman, Vivian G Cheung.
Genome Res, 2009 Oct 03; 19(11). PMID: 19797678    Free PMC article.
Topological properties of co-occurrence networks in published gene expression signatures.
Heiko Muller, Francesco Acquati.
Bioinform Biol Insights, 2008 Jan 01; 2. PMID: 19812777    Free PMC article.
Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs.
Marc-Thorsten Hütt, Annick Lesne.
Front Neuroinform, 2009 Oct 15; 3. PMID: 19826610    Free PMC article.
Identification of functionally related genes using data mining and data integration: a breast cancer case study.
Ettore Mosca, Gloria Bertoli, +4 authors, Luciano Milanesi.
BMC Bioinformatics, 2009 Oct 27; 10 Suppl 12. PMID: 19828084    Free PMC article.
Stability of metabolic correlations under changing environmental conditions in Escherichia coli--a systems approach.
Jedrzej Szymanski, Szymon Jozefczuk, +4 authors, Lothar Willmitzer.
PLoS One, 2009 Oct 16; 4(10). PMID: 19829699    Free PMC article.
Breaking the hierarchy--a new cluster selection mechanism for hierarchical clustering methods.
László A Zahoránszky, Gyula Y Katona, +3 authors, Gergely Zahoránszky-Köhalmi.
Algorithms Mol Biol, 2009 Oct 21; 4. PMID: 19840391    Free PMC article.
Evolution of biomolecular networks: lessons from metabolic and protein interactions.
Takuji Yamada, Peer Bork.
Nat Rev Mol Cell Biol, 2009 Oct 24; 10(11). PMID: 19851337
Review.
Models of cortical networks with long-range patchy projections.
Nicole Voges, Christian Guijarro, Ad Aertsen, Stefan Rotter.
J Comput Neurosci, 2009 Oct 30; 28(1). PMID: 19866352
Structure of protein interaction networks and their implications on drug design.
Takeshi Hase, Hiroshi Tanaka, +2 authors, Hiroaki Kitano.
PLoS Comput Biol, 2009 Oct 31; 5(10). PMID: 19876376    Free PMC article.
Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization.
Koene R A Van Dijk, Trey Hedden, +3 authors, Randy L Buckner.
J Neurophysiol, 2009 Nov 06; 103(1). PMID: 19889849    Free PMC article.
Highly Cited.
Elucidation of functional consequences of signalling pathway interactions.
Adaoha E C Ihekwaba, Phuong T Nguyen, Corrado Priami.
BMC Bioinformatics, 2009 Nov 10; 10. PMID: 19895694    Free PMC article.
Toward understanding allosteric signaling mechanisms in the ATPase domain of molecular chaperones.
Ying Liu, Ivet Bahar.
Pac Symp Biocomput, 2009 Nov 13;. PMID: 19908379    Free PMC article.
Co-expression networks: graph properties and topological comparisons.
Ramon Xulvi-Brunet, Hongzhe Li.
Bioinformatics, 2009 Nov 17; 26(2). PMID: 19910304    Free PMC article.
Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast.
Gavin C Conant.
Proc Biol Sci, 2009 Nov 20; 277(1683). PMID: 19923128    Free PMC article.
Cross-species analyses of the cortical GABAergic and subplate neural populations.
Barbara Clancy, Terri J Teague-Ross, Radhakrishnan Nagarajan.
Front Neuroanat, 2009 Nov 26; 3. PMID: 19936319    Free PMC article.
Spectral affinity in protein networks.
Konstantin Voevodski, Shang-Hua Teng, Yu Xia.
BMC Syst Biol, 2009 Dec 01; 3. PMID: 19943959    Free PMC article.
What makes the health system tick?
Jeffrey Braithwaite, Johanna I Westbrook.
Int J Qual Health Care, 2009 Dec 04; 22(1). PMID: 19955109    Free PMC article.
Long-term effects of temporal lobe epilepsy on local neural networks: a graph theoretical analysis of corticography recordings.
Edwin van Dellen, Linda Douw, +6 authors, Jaap C Reijneveld.
PLoS One, 2009 Dec 04; 4(11). PMID: 19956634    Free PMC article.
Chromatin regulation and gene centrality are essential for controlling fitness pleiotropy in yeast.
Linqi Zhou, Xiaotu Ma, Michelle N Arbeitman, Fengzhu Sun.
PLoS One, 2009 Dec 04; 4(11). PMID: 19956643    Free PMC article.
The influence of the phonological neighborhood clustering coefficient on spoken word recognition.
Kit Ying Chan, Michael S Vitevitch.
J Exp Psychol Hum Percept Perform, 2009 Dec 09; 35(6). PMID: 19968444    Free PMC article.
Exploring biological network structure with clustered random networks.
Shweta Bansal, Shashank Khandelwal, Lauren Ancel Meyers.
BMC Bioinformatics, 2009 Dec 17; 10. PMID: 20003212    Free PMC article.
Resting network plasticity following brain injury.
Toru Nakamura, Frank G Hillary, Bharat B Biswal.
PLoS One, 2009 Dec 17; 4(12). PMID: 20011533    Free PMC article.
Age- and gender-related differences in the cortical anatomical network.
Gaolang Gong, Pedro Rosa-Neto, +3 authors, Alan C Evans.
J Neurosci, 2009 Dec 18; 29(50). PMID: 20016083    Free PMC article.
Highly Cited.
A large scale analysis of information-theoretic network complexity measures using chemical structures.
Matthias Dehmer, Nicola Barbarini, Kurt Varmuza, Armin Graber.
PLoS One, 2009 Dec 18; 4(12). PMID: 20016828    Free PMC article.
Short paths in protein structure space originate in graph structure.
Michael Zimmermann, Fadi Towfic, Robert L Jernigan, Andrzej Kloczkowski.
Proc Natl Acad Sci U S A, 2009 Dec 19; 106(51). PMID: 20018710    Free PMC article.
Reducing in fl uenza spreading over the airline network.
Jose Marcelino, Marcus Kaiser.
PLoS Curr, 2009 Dec 22; 1. PMID: 20020673    Free PMC article.
Comparison of characteristics between region-and voxel-based network analyses in resting-state fMRI data.
Satoru Hayasaka, Paul J Laurienti.
Neuroimage, 2009 Dec 23; 50(2). PMID: 20026219    Free PMC article.
Highly Cited.
Understanding large multiprotein complexes: applying a multiple allosteric networks model to explain the function of the Mediator transcription complex.
Brian A Lewis.
J Cell Sci, 2010 Jan 06; 123(Pt 2). PMID: 20048337    Free PMC article.
Disease and the brain's dark energy.
Dongyang Zhang, Marcus E Raichle.
Nat Rev Neurol, 2010 Jan 09; 6(1). PMID: 20057496
Highly Cited. Review.
Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data.
X Shen, X Papademetris, R T Constable.
Neuroimage, 2010 Jan 12; 50(3). PMID: 20060479    Free PMC article.
Early transformations in odor representation.
Thomas A Cleland.
Trends Neurosci, 2010 Jan 12; 33(3). PMID: 20060600    Free PMC article.
Review.
Structural and functional roles of coevolved sites in proteins.
Saikat Chakrabarti, Anna R Panchenko.
PLoS One, 2010 Jan 13; 5(1). PMID: 20066038    Free PMC article.
Altered functional connectivity and small-world in mesial temporal lobe epilepsy.
Wei Liao, Zhiqiang Zhang, +6 authors, Huafu Chen.
PLoS One, 2010 Jan 15; 5(1). PMID: 20072616    Free PMC article.
Highly Cited.
The complex network of global cargo ship movements.
Pablo Kaluza, Andrea Kölzsch, Michael T Gastner, Bernd Blasius.
J R Soc Interface, 2010 Jan 21; 7(48). PMID: 20086053    Free PMC article.
Modelling celullar communication with scale-free networks.
Radu Dobrescu, Victor Purcărea.
J Med Life, 2008 Apr 01; 1(2). PMID: 20108462    Free PMC article.
Network based models for biological applications.
Radu Dobrescu, Victor Purcărea.
J Med Life, 2010 Jan 30; 2(2). PMID: 20108537    Free PMC article.
Review.
Endophenotypes in a dynamically connected brain.
D J A Smit, M Boersma, +4 authors, E J C de Geus.
Behav Genet, 2010 Jan 30; 40(2). PMID: 20111993    Free PMC article.
A temporal precedence based clustering method for gene expression microarray data.
Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Wollaston.
BMC Bioinformatics, 2010 Feb 02; 11. PMID: 20113513    Free PMC article.
Understanding protein non-folding.
Vladimir N Uversky, A Keith Dunker.
Biochim Biophys Acta, 2010 Feb 02; 1804(6). PMID: 20117254    Free PMC article.
Highly Cited. Review.
A network-theoretic approach for decompositional translation across Open Biological Ontologies.
Chintan O Patel, James J Cimino.
J Biomed Inform, 2010 Feb 11; 43(4). PMID: 20144734    Free PMC article.
Brain reward circuitry beyond the mesolimbic dopamine system: a neurobiological theory.
Satoshi Ikemoto.
Neurosci Biobehav Rev, 2010 Feb 13; 35(2). PMID: 20149820    Free PMC article.
Highly Cited. Review.
Computational approaches for detecting protein complexes from protein interaction networks: a survey.
Xiaoli Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng.
BMC Genomics, 2010 Mar 03; 11 Suppl 1. PMID: 20158874    Free PMC article.
AN EMPIRICAL TEST OF RESPONDENT-DRIVEN SAMPLING: POINT ESTIMATES, VARIANCE, DEGREE MEASURES, AND OUT-OF-EQUILIBRIUM DATA.
Cyprian Wejnert.
Sociol Methodol, 2010 Feb 18; 39(1). PMID: 20161130    Free PMC article.
Finding sRNA generative locales from high-throughput sequencing data with NiBLS.
Daniel MacLean, Vincent Moulton, David J Studholme.
BMC Bioinformatics, 2010 Feb 20; 11. PMID: 20167070    Free PMC article.
Some features of the spread of epidemics and information on a random graph.
Rick Durrett.
Proc Natl Acad Sci U S A, 2010 Feb 20; 107(10). PMID: 20167800    Free PMC article.
The Likoma Network Study: Context, data collection, and initial results.
Stéphane Helleringer, Hans-Peter Kohler, +2 authors, James Mkandawire.
Demogr Res, 2010 Feb 25; 21. PMID: 20179777    Free PMC article.
Universality in protein residue networks.
Ernesto Estrada.
Biophys J, 2010 Mar 04; 98(5). PMID: 20197043    Free PMC article.
A systems biology approach to understanding atherosclerosis.
Stephen A Ramsey, Elizabeth S Gold, Alan Aderem.
EMBO Mol Med, 2010 Mar 05; 2(3). PMID: 20201031    Free PMC article.
Review.
Network Properties for Ranking Predicted miRNA Targets in Breast Cancer.
Jörg Linde, Björn Olsson, Zelmina Lubovac.
Adv Bioinformatics, 2009 Jan 01;. PMID: 20224638    Free PMC article.
Local dynamics of gap-junction-coupled interneuron networks.
Troy Lau, Gregory J Gage, Joshua D Berke, Michal Zochowski.
Phys Biol, 2010 Mar 17; 7. PMID: 20228446    Free PMC article.
Topological network alignment uncovers biological function and phylogeny.
Oleksii Kuchaiev, Tijana Milenkovic, +2 authors, Natasa Przulj.
J R Soc Interface, 2010 Mar 20; 7(50). PMID: 20236959    Free PMC article.
Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches.
Jeanette Hellgren Kotaleski, Kim T Blackwell.
Nat Rev Neurosci, 2010 Mar 20; 11(4). PMID: 20300102    Free PMC article.
Review.
Calculation of disease dynamics in a population of households.
Joshua V Ross, Thomas House, Matt J Keeling.
PLoS One, 2010 Mar 23; 5(3). PMID: 20305791    Free PMC article.
Construction and analysis of protein-protein interaction networks.
Karthik Raman.
Autom Exp, 2010 Mar 26; 2(1). PMID: 20334628    Free PMC article.
TopoGSA: network topological gene set analysis.
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia.
Bioinformatics, 2010 Mar 26; 26(9). PMID: 20335277    Free PMC article.
Graph theoretical analysis of structural and functional connectivity MRI in normal and pathological brain networks.
Maxime Guye, Gaelle Bettus, Fabrice Bartolomei, Patrick J Cozzone.
MAGMA, 2010 Mar 30; 23(5-6). PMID: 20349109
Highly Cited. Review.
Social network analyses of patient-healthcare worker interactions: implications for disease transmission.
Adi Gundlapalli, Xiulian Ma, +5 authors, Matthew Samore.
AMIA Annu Symp Proc, 2009 Jan 01; 2009. PMID: 20351852    Free PMC article.
From evidence to inference: probing the evolution of protein interaction networks.
Oliver Ratmann, Carsten Wiuf, John W Pinney.
HFSP J, 2010 Apr 02; 3(5). PMID: 20357887    Free PMC article.
Evidence for large complex networks of plant short silencing RNAs.
Daniel MacLean, Nataliya Elina, +3 authors, David C Baulcombe.
PLoS One, 2010 Apr 03; 5(3). PMID: 20360863    Free PMC article.
Multifractal network generator.
Gergely Palla, László Lovász, Tamás Vicsek.
Proc Natl Acad Sci U S A, 2010 Apr 14; 107(17). PMID: 20385847    Free PMC article.
Dynamics and control of diseases in networks with community structure.
Marcel Salathé, James H Jones.
PLoS Comput Biol, 2010 Apr 14; 6(4). PMID: 20386735    Free PMC article.
Highly Cited.
Catastrophic cascade of failures in interdependent networks.
Sergey V Buldyrev, Roni Parshani, +2 authors, Shlomo Havlin.
Nature, 2010 Apr 16; 464(7291). PMID: 20393559
Highly Cited.
Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network.
Joanna Boruc, Hilde Van den Daele, +6 authors, Eugenia Russinova.
Plant Cell, 2010 Apr 22; 22(4). PMID: 20407024    Free PMC article.
Individual identity and movement networks for disease metapopulations.
Matt J Keeling, Leon Danon, Matthew C Vernon, Thomas A House.
Proc Natl Acad Sci U S A, 2010 Apr 28; 107(19). PMID: 20421468    Free PMC article.
Efficient physical embedding of topologically complex information processing networks in brains and computer circuits.
Danielle S Bassett, Daniel L Greenfield, +3 authors, Edward T Bullmore.
PLoS Comput Biol, 2010 Apr 28; 6(4). PMID: 20421990    Free PMC article.
Highly Cited.
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.
Young-Rae Cho, Aidong Zhang.
BMC Bioinformatics, 2010 May 14; 11 Suppl 3. PMID: 20438650    Free PMC article.
Scale-free topology of the CA3 hippocampal network: a novel method to analyze functional neuronal assemblies.
Xiaoli Li, Gaoxiang Ouyang, +2 authors, Attila Sik.
Biophys J, 2010 May 06; 98(9). PMID: 20441736    Free PMC article.
A comparative study of 11 local health department organizational networks.
Jacqueline Merrill, Jonathan W Keeling, Kathleen M Carley.
J Public Health Manag Pract, 2010 May 07; 16(6). PMID: 20445462    Free PMC article.
Functional connectivity density mapping.
Dardo Tomasi, Nora D Volkow.
Proc Natl Acad Sci U S A, 2010 May 12; 107(21). PMID: 20457896    Free PMC article.
Highly Cited.
Modularity and anti-modularity in networks with arbitrary degree distribution.
Arend Hintze, Christoph Adami.
Biol Direct, 2010 May 13; 5. PMID: 20459629    Free PMC article.
Evolution of metabolic network organization.
Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A Buck.
BMC Syst Biol, 2010 May 13; 4. PMID: 20459825    Free PMC article.
Social network structure of a large online community for smoking cessation.
Nathan K Cobb, Amanda L Graham, David B Abrams.
Am J Public Health, 2010 May 15; 100(7). PMID: 20466971    Free PMC article.
Circuit topology for synchronizing neurons in spontaneously active networks.
Naoya Takahashi, Takuya Sasaki, +2 authors, Yuji Ikegaya.
Proc Natl Acad Sci U S A, 2010 May 19; 107(22). PMID: 20479225    Free PMC article.
A human functional protein interaction network and its application to cancer data analysis.
Guanming Wu, Xin Feng, Lincoln Stein.
Genome Biol, 2010 May 21; 11(5). PMID: 20482850    Free PMC article.
Highly Cited.
Discrimination of thermophilic and mesophilic proteins.
Todd J Taylor, Iosif I Vaisman.
BMC Struct Biol, 2010 May 28; 10 Suppl 1. PMID: 20487512    Free PMC article.
Exploiting the determinants of stochastic gene expression in Saccharomyces cerevisiae for genome-wide prediction of expression noise.
Jingjing Li, Renqiang Min, +3 authors, Zhaolei Zhang.
Proc Natl Acad Sci U S A, 2010 May 22; 107(23). PMID: 20489180    Free PMC article.
Inferring the physical connectivity of complex networks from their functional dynamics.
Hung Xuan Ta, Chang No Yoon, Liisa Holm, Seung Kee Han.
BMC Syst Biol, 2010 May 27; 4. PMID: 20500902    Free PMC article.
Effect of heterogeneous mixing and vaccination on the dynamics of anthelmintic resistance: a nested model.
Lorenzo Sabatelli.
PLoS One, 2010 May 27; 5(5). PMID: 20502690    Free PMC article.
Edge direction and the structure of networks.
Jacob G Foster, David V Foster, Peter Grassberger, Maya Paczuski.
Proc Natl Acad Sci U S A, 2010 May 28; 107(24). PMID: 20505119    Free PMC article.
Reverse engineering large-scale genetic networks: synthetic versus real data.
Luwen Zhang, Mei Xiao, Yong Wang, Wu Zhang.
J Genet, 2010 May 28; 89(1). PMID: 20505249
A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes.
Andy Lin, Richard T Wang, +2 authors, Desmond J Smith.
Genome Res, 2010 May 29; 20(8). PMID: 20508145    Free PMC article.
Optimal hierarchical modular topologies for producing limited sustained activation of neural networks.
Marcus Kaiser, Claus C Hilgetag.
Front Neuroinform, 2010 Jun 02; 4. PMID: 20514144    Free PMC article.
A graph-theoretical approach in brain functional networks. Possible implications in EEG studies.
Fabrizio De Vico Fallani, Luciano da Fontoura Costa, +9 authors, Fabio Babiloni.
Nonlinear Biomed Phys, 2010 Jun 05; 4 Suppl 1. PMID: 20522269    Free PMC article.
Using selection bias to explain the observed structure of Internet diffusions.
Benjamin Golub, Matthew O Jackson.
Proc Natl Acad Sci U S A, 2010 Jun 11; 107(24). PMID: 20534439    Free PMC article.
Protein folded states are kinetic hubs.
Gregory R Bowman, Vijay S Pande.
Proc Natl Acad Sci U S A, 2010 Jun 11; 107(24). PMID: 20534497    Free PMC article.
Double dissociation of two cognitive control networks in patients with focal brain lesions.
Emi M Nomura, Caterina Gratton, +3 authors, Mark D'Esposito.
Proc Natl Acad Sci U S A, 2010 Jun 16; 107(26). PMID: 20547857    Free PMC article.
The organization of local and distant functional connectivity in the human brain.
Jorge Sepulcre, Hesheng Liu, +3 authors, Randy L Buckner.
PLoS Comput Biol, 2010 Jun 16; 6(6). PMID: 20548945    Free PMC article.
Highly Cited.
Network-level analysis of cortical thickness of the epileptic brain.
A Raj, S G Mueller, +2 authors, M Weiner.
Neuroimage, 2010 Jun 18; 52(4). PMID: 20553893    Free PMC article.
A Poisson model for random multigraphs.
John M O Ranola, Sangtae Ahn, +2 authors, Kenneth Lange.
Bioinformatics, 2010 Jun 18; 26(16). PMID: 20554690    Free PMC article.
Novel topological descriptors for analyzing biological networks.
Matthias M Dehmer, Nicola N Barbarini, Kurt K Varmuza, Armin A Graber.
BMC Struct Biol, 2010 Jun 23; 10. PMID: 20565796    Free PMC article.
Force networks and elasticity in granular silos.
J F Wambaugh, R R Hartley, R P Behringer.
Eur Phys J E Soft Matter, 2010 Jun 29; 32(2). PMID: 20582447
Graph-based network analysis of resting-state functional MRI.
Jinhui Wang, Xinian Zuo, Yong He.
Front Syst Neurosci, 2010 Jul 01; 4. PMID: 20589099    Free PMC article.
Highly Cited.
Using network science to evaluate exercise-associated brain changes in older adults.
Jonathan H Burdette, Paul J Laurienti, +8 authors, W Jack Rejeski.
Front Aging Neurosci, 2010 Jul 01; 2. PMID: 20589103    Free PMC article.
Highly Cited.
Correlated firing in tufted cells of mouse olfactory bulb.
J Ma, G Lowe.
Neuroscience, 2010 Jul 06; 169(4). PMID: 20600657    Free PMC article.
Phase-response curves and synchronized neural networks.
Roy M Smeal, G Bard Ermentrout, John A White.
Philos Trans R Soc Lond B Biol Sci, 2010 Jul 07; 365(1551). PMID: 20603361    Free PMC article.
Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks.
Arzucan Ozgür, Zuoshuang Xiang, Dragomir R Radev, Yongqun He.
J Biomed Biotechnol, 2010 Jul 14; 2010. PMID: 20625487    Free PMC article.
Network architecture of the long-distance pathways in the macaque brain.
Dharmendra S Modha, Raghavendra Singh.
Proc Natl Acad Sci U S A, 2010 Jul 16; 107(30). PMID: 20628011    Free PMC article.
Optimal network alignment with graphlet degree vectors.
Tijana Milenković, Weng Leong Ng, Wayne Hayes, Natasa Przulj.
Cancer Inform, 2010 Jul 16; 9. PMID: 20628593    Free PMC article.
Functional connectivity and brain networks in schizophrenia.
Mary-Ellen Lynall, Danielle S Bassett, +4 authors, Ed Bullmore.
J Neurosci, 2010 Jul 16; 30(28). PMID: 20631176    Free PMC article.
Highly Cited.
The function of communities in protein interaction networks at multiple scales.
Anna C F Lewis, Nick S Jones, Mason A Porter, Charlotte M Deane.
BMC Syst Biol, 2010 Jul 24; 4. PMID: 20649971    Free PMC article.
Brain anatomical networks in early human brain development.
Yong Fan, Feng Shi, +3 authors, Dinggang Shen.
Neuroimage, 2010 Jul 24; 54(3). PMID: 20650319    Free PMC article.
Highly Cited.
A survey of current software for network analysis in molecular biology.
Sterling Thomas, Danail Bonchev.
Hum Genomics, 2010 Jul 24; 4(5). PMID: 20650822    Free PMC article.
Review.
Inferring modules from human protein interactome classes.
Elisabetta Marras, Antonella Travaglione, +2 authors, Enrico Capobianco.
BMC Syst Biol, 2010 Jul 27; 4. PMID: 20653930    Free PMC article.
Googling social interactions: web search engine based social network construction.
Sang Hoon Lee, Pan-Jun Kim, Yong-Yeol Ahn, Hawoong Jeong.
PLoS One, 2010 Jul 27; 5(7). PMID: 20657762    Free PMC article.
Neurophysiological and computational principles of cortical rhythms in cognition.
Xiao-Jing Wang.
Physiol Rev, 2010 Jul 29; 90(3). PMID: 20664082    Free PMC article.
Highly Cited. Review.
Networking the nucleus.
Indika Rajapakse, David Scalzo, +2 authors, Mark Groudine.
Mol Syst Biol, 2010 Jul 29; 6. PMID: 20664641    Free PMC article.
Review.
Coalescence and fragmentation of cortical networks during focal seizures.
Mark A Kramer, Uri T Eden, +3 authors, Sydney S Cash.
J Neurosci, 2010 Jul 30; 30(30). PMID: 20668192    Free PMC article.
Histopathological image analysis: a review.
Metin N Gurcan, Laura E Boucheron, +3 authors, B Yener.
IEEE Rev Biomed Eng, 2009 Jan 01; 2. PMID: 20671804    Free PMC article.
Highly Cited. Review.
Drug discovery in a multidimensional world: systems, patterns, and networks.
Joel T Dudley, Eric Schadt, +2 authors, Euan Ashley.
J Cardiovasc Transl Res, 2010 Aug 03; 3(5). PMID: 20677029
Collaboration in sensor network research: an in-depth longitudinal analysis of assortative mixing patterns.
Alberto Pepe, Marko A Rodriguez.
Scientometrics, 2010 Aug 12; 84(3). PMID: 20700373    Free PMC article.
Characterizing the community structure of complex networks.
Andrea Lancichinetti, Mikko Kivelä, Jari Saramäki, Santo Fortunato.
PLoS One, 2010 Aug 17; 5(8). PMID: 20711338    Free PMC article.
Are parasites ''prudent'' in space?
Sébastien Lion, Mike Boots.
Ecol Lett, 2010 Aug 24; 13(10). PMID: 20727004    Free PMC article.
Epilepsy is related to theta band brain connectivity and network topology in brain tumor patients.
Linda Douw, Edwin van Dellen, +4 authors, Jaap C Reijneveld.
BMC Neurosci, 2010 Aug 25; 11. PMID: 20731854    Free PMC article.
Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods.
Luis P Fernandes, Alessia Annibale, +2 authors, Franca Fraternali.
PLoS One, 2010 Sep 02; 5(8). PMID: 20805870    Free PMC article.
A new measure of centrality for brain networks.
Karen E Joyce, Paul J Laurienti, Jonathan H Burdette, Satoru Hayasaka.
PLoS One, 2010 Sep 03; 5(8). PMID: 20808943    Free PMC article.
Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics.
István A Kovács, Robin Palotai, Máté S Szalay, Peter Csermely.
PLoS One, 2010 Sep 09; 5(9). PMID: 20824084    Free PMC article.
The development of human functional brain networks.
Jonathan D Power, Damien A Fair, Bradley L Schlaggar, Steven E Petersen.
Neuron, 2010 Sep 10; 67(5). PMID: 20826306    Free PMC article.
Highly Cited. Review.
Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure.
A Annibale, Acc Coolen, +2 authors, J Kleinjung.
J Phys A Math Gen, 2010 Sep 17; 42(48). PMID: 20844594    Free PMC article.
FragViz: visualization of fragmented networks.
Miha Stajdohar, Minca Mramor, Blaž Zupan, Janez Demšar.
BMC Bioinformatics, 2010 Sep 24; 11. PMID: 20860802    Free PMC article.
Statistic complexity: combining kolmogorov complexity with an ensemble approach.
Frank Emmert-Streib.
PLoS One, 2010 Sep 25; 5(8). PMID: 20865047    Free PMC article.
Optimizing brain networks topologies using multi-objective evolutionary computation.
Roberto Santana, Concha Bielza, Pedro Larrañaga.
Neuroinformatics, 2010 Oct 01; 9(1). PMID: 20882369
MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features.
Juan Xu, Chuan-Xing Li, +11 authors, Xia Li.
Nucleic Acids Res, 2010 Oct 12; 39(3). PMID: 20929877    Free PMC article.
Highly Cited.
Broker genes in human disease.
James J Cai, Elhanan Borenstein, Dmitri A Petrov.
Genome Biol Evol, 2010 Oct 13; 2. PMID: 20937604    Free PMC article.
The semantic organization of the animal category: evidence from semantic verbal fluency and network theory.
Joaquín Goñi, Gonzalo Arrondo, +8 authors, Pablo Villoslada.
Cogn Process, 2010 Oct 13; 12(2). PMID: 20938799
Functional molecular ecological networks.
Jizhong Zhou, Ye Deng, +3 authors, Xiaoyang Zhi.
mBio, 2010 Oct 14; 1(4). PMID: 20941329    Free PMC article.
Influence of the time scale on the construction of financial networks.
Frank Emmert-Streib, Matthias Dehmer.
PLoS One, 2010 Oct 16; 5(9). PMID: 20949124    Free PMC article.
Comparison of five directed graph measures for identification of leading interictal epileptic regions.
L Amini, C Jutten, +6 authors, H Soltanian-Zadeh.
Physiol Meas, 2010 Oct 19; 31(11). PMID: 20952817    Free PMC article.
Connectivity-driven white matter scaling and folding in primate cerebral cortex.
Suzana Herculano-Houzel, Bruno Mota, Peiyan Wong, Jon H Kaas.
Proc Natl Acad Sci U S A, 2010 Oct 20; 107(44). PMID: 20956290    Free PMC article.
Abnormal small-world architecture of top-down control networks in obsessive-compulsive disorder.
Tijiang Zhang, Jinhui Wang, +12 authors, Qiyong Gong.
J Psychiatry Neurosci, 2010 Oct 23; 36(1). PMID: 20964957    Free PMC article.
Enriched white matter connectivity networks for accurate identification of MCI patients.
Chong-Yaw Wee, Pew-Thian Yap, +6 authors, Dinggang Shen.
Neuroimage, 2010 Oct 26; 54(3). PMID: 20970508    Free PMC article.
Resting developments: a review of fMRI post-processing methodologies for spontaneous brain activity.
Daniel S Margulies, Joachim Böttger, +8 authors, Arno Villringer.
MAGMA, 2010 Oct 26; 23(5-6). PMID: 20972883
Highly Cited. Review.
Individualization as driving force of clustering phenomena in humans.
Michael Mäs, Andreas Flache, Dirk Helbing.
PLoS Comput Biol, 2010 Oct 27; 6(10). PMID: 20975937    Free PMC article.
Development of the brain's functional network architecture.
Alecia C Vogel, Jonathan D Power, Steven E Petersen, Bradley L Schlaggar.
Neuropsychol Rev, 2010 Oct 27; 20(4). PMID: 20976563    Free PMC article.
Review.
Information propagation within the Genetic Network of Saccharomyces cerevisiae.
Sharif Chowdhury, Jason Lloyd-Price, +5 authors, Andre S Ribeiro.
BMC Syst Biol, 2010 Oct 28; 4. PMID: 20977725    Free PMC article.
Disease transmission in territorial populations: the small-world network of Serengeti lions.
Meggan E Craft, Erik Volz, Craig Packer, Lauren Ancel Meyers.
J R Soc Interface, 2010 Oct 30; 8(59). PMID: 21030428    Free PMC article.
Disrupted modularity and local connectivity of brain functional networks in childhood-onset schizophrenia.
Aaron F Alexander-Bloch, Nitin Gogtay, +6 authors, Edward T Bullmore.
Front Syst Neurosci, 2010 Oct 30; 4. PMID: 21031030    Free PMC article.
Highly Cited.
Diffusion tensor-based fast marching for modeling human brain connectivity network.
Hai Li, Zhong Xue, Kemi Cui, Stephen T C Wong.
Comput Med Imaging Graph, 2010 Nov 03; 35(3). PMID: 21035304    Free PMC article.
Comparing brain networks of different size and connectivity density using graph theory.
Bernadette C M van Wijk, Cornelis J Stam, Andreas Daffertshofer.
PLoS One, 2010 Nov 10; 5(10). PMID: 21060892    Free PMC article.
Highly Cited.
Improving evolutionary models of protein interaction networks.
Todd A Gibson, Debra S Goldberg.
Bioinformatics, 2010 Nov 12; 27(3). PMID: 21067999    Free PMC article.
Loss of 'small-world' networks in Alzheimer's disease: graph analysis of FMRI resting-state functional connectivity.
Ernesto J Sanz-Arigita, Menno M Schoonheim, +5 authors, Cornelis J Stam.
PLoS One, 2010 Nov 13; 5(11). PMID: 21072180    Free PMC article.
Highly Cited.
Personality in the context of social networks.
J Krause, R James, D P Croft.
Philos Trans R Soc Lond B Biol Sci, 2010 Nov 17; 365(1560). PMID: 21078661    Free PMC article.
Review.
Infectious disease modeling of social contagion in networks.
Alison L Hill, David G Rand, Martin A Nowak, Nicholas A Christakis.
PLoS Comput Biol, 2010 Nov 17; 6(11). PMID: 21079667    Free PMC article.
Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes.
Takeshi Hase, Yoshihito Niimura, Hiroshi Tanaka.
BMC Evol Biol, 2010 Nov 23; 10. PMID: 21087510    Free PMC article.
Ultrafast method for mapping local functional connectivity hubs in the human brain.
Dardo Tomasi, Nora D Volkow.
Annu Int Conf IEEE Eng Med Biol Soc, 2010 Nov 26; 2010. PMID: 21095749    Free PMC article.
Network analysis of human protein location.
Gaurav Kumar, Shoba Ranganathan.
BMC Bioinformatics, 2010 Dec 09; 11 Suppl 7. PMID: 21106131    Free PMC article.
Effect of network topology on neuronal encoding based on spatiotemporal patterns of spikes.
Petra E Vertes, Thomas Duke.
HFSP J, 2010 Dec 02; 4(3-4). PMID: 21119767    Free PMC article.
The lesioned brain: still a small-world?
Linda Douw, Edwin van Dellen, +6 authors, Cornelis Jan Stam.
Front Hum Neurosci, 2010 Dec 02; 4. PMID: 21120140    Free PMC article.
Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components.
Christopher Y Park, David C Hess, Curtis Huttenhower, Olga G Troyanskaya.
PLoS Comput Biol, 2010 Dec 03; 6(11). PMID: 21124865    Free PMC article.
Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease.
Zhijun Yao, Yuanchao Zhang, +4 authors, Alzheimer's Disease Neuroimaging Initiative.
PLoS Comput Biol, 2010 Dec 03; 6(11). PMID: 21124954    Free PMC article.
Highly Cited.
The structure of borders in a small world.
Christian Thiemann, Fabian Theis, +2 authors, Dirk Brockmann.
PLoS One, 2010 Dec 03; 5(11). PMID: 21124970    Free PMC article.
Empiricism and theorizing in epidemiology and social network analysis.
Richard Rothenberg, Elizabeth Costenbader.
Interdiscip Perspect Infect Dis, 2010 Dec 04; 2011. PMID: 21127746    Free PMC article.
Spiral wave dynamics in neocortex.
Xiaoying Huang, Weifeng Xu, +3 authors, Jian-Young Wu.
Neuron, 2010 Dec 15; 68(5). PMID: 21145009    Free PMC article.
A high-resolution human contact network for infectious disease transmission.
Marcel Salathé, Maria Kazandjieva, +3 authors, James H Jones.
Proc Natl Acad Sci U S A, 2010 Dec 15; 107(51). PMID: 21149721    Free PMC article.
Highly Cited.
Modular and hierarchically modular organization of brain networks.
David Meunier, Renaud Lambiotte, Edward T Bullmore.
Front Neurosci, 2010 Dec 15; 4. PMID: 21151783    Free PMC article.
Highly Cited.
Heterogeneous aspirations promote cooperation in the prisoner's dilemma game.
Matjaž Perc, Zhen Wang.
PLoS One, 2010 Dec 15; 5(12). PMID: 21151898    Free PMC article.
An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies.
Jaap van Pelt, Andrew Carnell, +2 authors, Arjen van Ooyen.
Front Comput Neurosci, 2010 Dec 17; 4. PMID: 21160548    Free PMC article.
Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo.
Nat Rev Genet, 2010 Dec 18; 12(1). PMID: 21164525    Free PMC article.
Highly Cited. Review.
Reproducibility of graph metrics in FMRI networks.
Qawi K Telesford, Ashley R Morgan, +5 authors, Paul J Laurienti.
Front Neuroinform, 2010 Dec 18; 4. PMID: 21165174    Free PMC article.
Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case.
José Luiz Rybarczyk-Filho, Mauro A A Castro, +3 authors, Rita M C de Almeida.
Nucleic Acids Res, 2010 Dec 21; 39(8). PMID: 21169199    Free PMC article.
Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology.
Liping Jing, Michael K Ng.
BMC Bioinformatics, 2011 Jan 05; 11 Suppl 11. PMID: 21172053    Free PMC article.
Quantitative and empirical demonstration of the Matthew effect in a study of career longevity.
Alexander M Petersen, Woo-Sung Jung, Jae-Suk Yang, H Eugene Stanley.
Proc Natl Acad Sci U S A, 2010 Dec 22; 108(1). PMID: 21173276    Free PMC article.
Assortative mixing in close-packed spatial networks.
Deniz Turgut, Ali Rana Atilgan, Canan Atilgan.
PLoS One, 2010 Dec 24; 5(12). PMID: 21179578    Free PMC article.
Angular Synchronization by Eigenvectors and Semidefinite Programming.
A Singer.
Appl Comput Harmon Anal, 2010 Dec 24; 30(1). PMID: 21179593    Free PMC article.
Critical effect of dependency groups on the function of networks.
Roni Parshani, Sergey V Buldyrev, Shlomo Havlin.
Proc Natl Acad Sci U S A, 2010 Dec 31; 108(3). PMID: 21191103    Free PMC article.
Insulin modulation of magnetoencephalographic resting state dynamics in lean and obese subjects.
Krunoslav T Stingl, Stephanie Kullmann, +3 authors, Hubert Preissl.
Front Syst Neurosci, 2010 Dec 31; 4. PMID: 21191479    Free PMC article.
Reconstruction of protein-protein interaction network of insulin signaling in Homo sapiens.
Saliha Durmuş Tekir, Pelin Ümit, Aysun Eren Toku, Kutlu Ö Ülgen.
J Biomed Biotechnol, 2011 Jan 05; 2010. PMID: 21197403    Free PMC article.
Systems approach to studying animal sociality: individual position versus group organization in dynamic social network models.
Karlo Hock, Kah Loon Ng, Nina H Fefferman.
PLoS One, 2011 Jan 05; 5(12). PMID: 21203425    Free PMC article.
Synaptic scaling stabilizes persistent activity driven by asynchronous neurotransmitter release.
Vladislav Volman, Richard C Gerkin.
Neural Comput, 2011 Jan 13; 23(4). PMID: 21222524    Free PMC article.
Predicting disease-associated substitution of a single amino acid by analyzing residue interactions.
Yizhou Li, Zhining Wen, +4 authors, Menglong Li.
BMC Bioinformatics, 2011 Jan 13; 12. PMID: 21223604    Free PMC article.
Dual-phase evolution in complex adaptive systems.
Greg Paperin, David G Green, Suzanne Sadedin.
J R Soc Interface, 2011 Jan 21; 8(58). PMID: 21247947    Free PMC article.
Review.
ePlant and the 3D data display initiative: integrative systems biology on the world wide web.
Geoffrey Fucile, David Di Biase, +7 authors, Nicholas J Provart.
PLoS One, 2011 Jan 21; 6(1). PMID: 21249219    Free PMC article.
Neural development features: spatio-temporal development of the Caenorhabditis elegans neuronal network.
Sreedevi Varier, Marcus Kaiser.
PLoS Comput Biol, 2011 Jan 22; 7(1). PMID: 21253561    Free PMC article.
Association between functional connectivity hubs and brain networks.
Dardo Tomasi, Nora D Volkow.
Cereb Cortex, 2011 Feb 02; 21(9). PMID: 21282318    Free PMC article.
Highly Cited.
The functional consequences of mutualistic network architecture.
José M Gómez, Francisco Perfectti, Pedro Jordano.
PLoS One, 2011 Feb 02; 6(1). PMID: 21283583    Free PMC article.
Is my network module preserved and reproducible?
Peter Langfelder, Rui Luo, Michael C Oldham, Steve Horvath.
PLoS Comput Biol, 2011 Feb 02; 7(1). PMID: 21283776    Free PMC article.
Highly Cited.
Practical measures of integrated information for time-series data.
Adam B Barrett, Anil K Seth.
PLoS Comput Biol, 2011 Feb 02; 7(1). PMID: 21283779    Free PMC article.
Automatic network fingerprinting through single-node motifs.
Christoph Echtermeyer, Luciano da Fontoura Costa, Francisco A Rodrigues, Marcus Kaiser.
PLoS One, 2011 Feb 08; 6(1). PMID: 21297963    Free PMC article.
Integrative features of the yeast phosphoproteome and protein-protein interaction map.
Nozomu Yachie, Rintaro Saito, +2 authors, Yasushi Ishihama.
PLoS Comput Biol, 2011 Feb 08; 7(1). PMID: 21298081    Free PMC article.
Network analysis: applications for the developing brain.
Catherine J Chu-Shore, Mark A Kramer, +2 authors, Sydney S Cash.
J Child Neurol, 2011 Feb 10; 26(4). PMID: 21303762    Free PMC article.
Review.
Structural properties of the Caenorhabditis elegans neuronal network.
Lav R Varshney, Beth L Chen, +2 authors, Dmitri B Chklovskii.
PLoS Comput Biol, 2011 Feb 10; 7(2). PMID: 21304930    Free PMC article.
Highly Cited.
Large-scale cortical functional organization and speech perception across the lifespan.
John P Sheppard, Ji-Ping Wang, Patrick C M Wong.
PLoS One, 2011 Feb 10; 6(1). PMID: 21304991    Free PMC article.
Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect?
Felipe Gerhard, Gordon Pipa, +2 authors, Wulfram Gerstner.
Front Comput Neurosci, 2011 Feb 24; 5. PMID: 21344015    Free PMC article.
On the architecture of cell regulation networks.
Yueheng Lan, Igor Mezić.
BMC Syst Biol, 2011 Mar 03; 5. PMID: 21362203    Free PMC article.
Connectedness of PPI network neighborhoods identifies regulatory hub proteins.
Andrew D Fox, Benjamin J Hescott, Anselm C Blumer, Donna K Slonim.
Bioinformatics, 2011 Mar 04; 27(8). PMID: 21367871    Free PMC article.
The non-random brain: efficiency, economy, and complex dynamics.
Olaf Sporns.
Front Comput Neurosci, 2011 Mar 04; 5. PMID: 21369354    Free PMC article.
Altered small-world brain networks in temporal lobe in patients with schizophrenia performing an auditory oddball task.
Qingbao Yu, Jing Sui, +3 authors, Vince D Calhoun.
Front Syst Neurosci, 2011 Mar 04; 5. PMID: 21369355    Free PMC article.
The interaction of intrinsic dynamics and network topology in determining network burst synchrony.
Chris Gaiteri, Jonathan E Rubin.
Front Comput Neurosci, 2011 Mar 05; 5. PMID: 21373358    Free PMC article.
Inferring model parameters in network-based disease simulation.
Eva A Enns, Margaret L Brandeau.
Health Care Manag Sci, 2011 Mar 05; 14(2). PMID: 21373984    Free PMC article.
Observing neighborhood effects without neighbors.
Lidia Suárez, Seok Hui Tan, Melvin J Yap, Winston D Goh.
Psychon Bull Rev, 2011 Mar 08; 18(3). PMID: 21380585
A synaptic organizing principle for cortical neuronal groups.
Rodrigo Perin, Thomas K Berger, Henry Markram.
Proc Natl Acad Sci U S A, 2011 Mar 09; 108(13). PMID: 21383177    Free PMC article.
Highly Cited.
Uncovering intrinsic connectional architecture of functional networks in awake rat brain.
Zhifeng Liang, Jean King, Nanyin Zhang.
J Neurosci, 2011 Mar 11; 31(10). PMID: 21389232    Free PMC article.
Highly Cited.
Synaptic plasticity and connectivity requirements to produce stimulus-pair specific responses in recurrent networks of spiking neurons.
Mark A Bourjaily, Paul Miller.
PLoS Comput Biol, 2011 Mar 11; 7(2). PMID: 21390275    Free PMC article.
Wikipedia information flow analysis reveals the scale-free architecture of the semantic space.
Adolfo Paolo Masucci, Alkiviadis Kalampokis, Victor Martínez Eguíluz, Emilio Hernández-García.
PLoS One, 2011 Mar 17; 6(2). PMID: 21407801    Free PMC article.
Cooperation and contagion in web-based, networked public goods experiments.
Siddharth Suri, Duncan J Watts.
PLoS One, 2011 Mar 18; 6(3). PMID: 21412431    Free PMC article.
Reorganization of cerebral networks after stroke: new insights from neuroimaging with connectivity approaches.
Christian Grefkes, Gereon R Fink.
Brain, 2011 Mar 19; 134(Pt 5). PMID: 21414995    Free PMC article.
Highly Cited. Review.
Fractals in the nervous system: conceptual implications for theoretical neuroscience.
Gerhard Werner.
Front Physiol, 2010 Jan 01; 1. PMID: 21423358    Free PMC article.
Storage of Phase-Coded Patterns via STDP in Fully-Connected and Sparse Network: A Study of the Network Capacity.
Silvia Scarpetta, Antonio de Candia, Ferdinando Giacco.
Front Synaptic Neurosci, 2010 Jan 01; 2. PMID: 21423518    Free PMC article.
Marine bacterial, archaeal and protistan association networks reveal ecological linkages.
Joshua A Steele, Peter D Countway, +13 authors, Jed A Fuhrman.
ISME J, 2011 Mar 25; 5(9). PMID: 21430787    Free PMC article.
Highly Cited.
Social network analysis in the study of nonhuman primates: a historical perspective.
Lauren J N Brent, Julia Lehmann, Gabriel Ramos-Fernández.
Am J Primatol, 2011 Mar 25; 73(8). PMID: 21433047    Free PMC article.
Review.
Networks and the epidemiology of infectious disease.
Leon Danon, Ashley P Ford, +5 authors, Matthew C Vernon.
Interdiscip Perspect Infect Dis, 2011 Mar 26; 2011. PMID: 21437001    Free PMC article.
Methods for generating complex networks with selected structural properties for simulations: a review and tutorial for neuroscientists.
Brenton J Prettejohn, Matthew J Berryman, Mark D McDonnell.
Front Comput Neurosci, 2011 Mar 29; 5. PMID: 21441986    Free PMC article.
A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny.
Zheng Wang, Xue-Cheng Zhang, +3 authors, Jianlin Cheng.
PLoS One, 2011 Apr 02; 6(3). PMID: 21455299    Free PMC article.
The role of nonlinearity in computing graph-theoretical properties of resting-state functional magnetic resonance imaging brain networks.
D Hartman, J Hlinka, +2 authors, M Corbetta.
Chaos, 2011 Apr 05; 21(1). PMID: 21456833    Free PMC article.
Functional Dedifferentiation and Altered Connectivity in Older Adults: Neural Accounts of Cognitive Aging.
Joshua O S Goh.
Aging Dis, 2011 Apr 05; 2(1). PMID: 21461180    Free PMC article.
BrainNetVis: an open-access tool to effectively quantify and visualize brain networks.
Eleni G Christodoulou, Vangelis Sakkalis, Vassilis Tsiaras, Ioannis G Tollis.
Comput Intell Neurosci, 2011 Apr 05; 2011. PMID: 21461404    Free PMC article.
A social network analysis of treatment discoveries in cancer.
Athanasios Tsalatsanis, Laura Barnes, +2 authors, Benjamin Djulbegovic.
PLoS One, 2011 Apr 06; 6(3). PMID: 21464896    Free PMC article.
Novel feature for catalytic protein residues reflecting interactions with other residues.
Yizhou Li, Gongbing Li, +4 authors, Menglong Li.
PLoS One, 2011 Apr 07; 6(3). PMID: 21468322    Free PMC article.
The modularity of seed dispersal: differences in structure and robustness between bat- and bird-fruit networks.
Marco Aurelio Ribeiro Mello, Flávia Maria Darcie Marquitti, +3 authors, Marcus Aloizio Martinez de Aguiar.
Oecologia, 2011 Apr 12; 167(1). PMID: 21479592
Statistically validated networks in bipartite complex systems.
Michele Tumminello, Salvatore Miccichè, +2 authors, Rosario N Mantegna.
PLoS One, 2011 Apr 13; 6(3). PMID: 21483858    Free PMC article.
Collaborative search in electronic health records.
Kai Zheng, Qiaozhu Mei, David A Hanauer.
J Am Med Inform Assoc, 2011 Apr 14; 18(3). PMID: 21486887    Free PMC article.
The effect of individual variation on the structure and function of interaction networks in harvester ants.
Noa Pinter-Wollman, Roy Wollman, +2 authors, Deborah M Gordon.
J R Soc Interface, 2011 Apr 15; 8(64). PMID: 21490001    Free PMC article.
Multilevel compression of random walks on networks reveals hierarchical organization in large integrated systems.
Martin Rosvall, Carl T Bergstrom.
PLoS One, 2011 Apr 16; 6(4). PMID: 21494658    Free PMC article.
Clustering predicts memory performance in networks of spiking and non-spiking neurons.
Weiliang Chen, Reinoud Maex, +3 authors, Neil Davey.
Front Comput Neurosci, 2011 Apr 27; 5. PMID: 21519373    Free PMC article.
Transition to parenthood: the role of social interaction and endogenous networks.
Belinda Aparicio Diaz, Thomas Fent, Alexia Prskawetz, Laura Bernardi.
Demography, 2011 Apr 28; 48(2). PMID: 21523518
Using network properties to predict disease dynamics on human contact networks.
Gregory M Ames, Dylan B George, +5 authors, Colleen T Webb.
Proc Biol Sci, 2011 Apr 29; 278(1724). PMID: 21525056    Free PMC article.
Using graph theory to analyze biological networks.
Georgios A Pavlopoulos, Maria Secrier, +5 authors, Pantelis G Bagos.
BioData Min, 2011 Apr 30; 4. PMID: 21527005    Free PMC article.
Highly Cited.
Network archaeology: uncovering ancient networks from present-day interactions.
Saket Navlakha, Carl Kingsford.
PLoS Comput Biol, 2011 May 03; 7(4). PMID: 21533211    Free PMC article.
Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints.
Michaël Bekaert, Patrick P Edger, J Chris Pires, Gavin C Conant.
Plant Cell, 2011 May 05; 23(5). PMID: 21540436    Free PMC article.
Properties of metabolic graphs: biological organization or representation artifacts?
Wanding Zhou, Luay Nakhleh.
BMC Bioinformatics, 2011 May 06; 12. PMID: 21542923    Free PMC article.
Constructing semantic representations from a gradually-changing representation of temporal context.
Marc W Howard, Karthik H Shankar, Udaya K K Jagadisan.
Top Cogn Sci, 2011 May 10; 3(1). PMID: 21552364    Free PMC article.
Maturation of a recurrent excitatory neocortical circuit by experience-dependent unsilencing of newly formed dendritic spines.
Michael C Ashby, John T R Isaac.
Neuron, 2011 May 11; 70(3). PMID: 21555076    Free PMC article.
Big words, halved brains and small worlds: complex brain networks of figurative language comprehension.
Yossi Arzouan, Sorin Solomon, Miriam Faust, Abraham Goldstein.
PLoS One, 2011 May 11; 6(4). PMID: 21556324    Free PMC article.
PRIN: a predicted rice interactome network.
Haibin Gu, Pengcheng Zhu, +2 authors, Ming Chen.
BMC Bioinformatics, 2011 May 18; 12. PMID: 21575196    Free PMC article.
Balancing the brain: resting state networks and deep brain stimulation.
Morten L Kringelbach, Alexander L Green, Tipu Z Aziz.
Front Integr Neurosci, 2011 May 18; 5. PMID: 21577250    Free PMC article.
Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions.
Bo Li, Weiguo Cao, Jizhong Zhou, Feng Luo.
BMC Syst Biol, 2011 May 19; 5. PMID: 21586150    Free PMC article.
Small worlds and semantic network growth in typical and late talkers.
Nicole Beckage, Linda Smith, Thomas Hills.
PLoS One, 2011 May 19; 6(5). PMID: 21589924    Free PMC article.
Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states.
Lindsey McKeen-Polizzotti, Kira M Henderson, +3 authors, George E Plopper.
BMC Med Imaging, 2011 May 24; 11. PMID: 21599975    Free PMC article.
MINE: Module Identification in Networks.
Kahn Rhrissorrakrai, Kristin C Gunsalus.
BMC Bioinformatics, 2011 May 25; 12. PMID: 21605434    Free PMC article.
Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs.
Sankar Basu, Dhananjay Bhattacharyya, Rahul Banerjee.
BMC Bioinformatics, 2011 May 25; 12. PMID: 21605466    Free PMC article.
Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).
W Walter Lorenz, Rob Alba, +3 authors, Jeffrey F D Dean.
BMC Genomics, 2011 May 26; 12. PMID: 21609476    Free PMC article.
Functional connectivity hubs in the human brain.
Dardo Tomasi, Nora D Volkow.
Neuroimage, 2011 May 26; 57(3). PMID: 21609769    Free PMC article.
Highly Cited.
A curve shaped description of large networks, with an application to the evaluation of network models.
Xianchuang Su, Xiaogang Jin, +2 authors, Jiangang Yang.
PLoS One, 2011 May 26; 6(5). PMID: 21611192    Free PMC article.
Reorganization of functional networks in mild cognitive impairment.
Javier M Buldú, Ricardo Bajo, +8 authors, Stefano Boccaletti.
PLoS One, 2011 Jun 01; 6(5). PMID: 21625430    Free PMC article.
Cellularly-driven differences in network synchronization propensity are differentially modulated by firing frequency.
Christian G Fink, Victoria Booth, Michal Zochowski.
PLoS Comput Biol, 2011 Jun 01; 7(5). PMID: 21625571    Free PMC article.
Topological cluster analysis reveals the systemic organization of the Caenorhabditis elegans connectome.
Yunkyu Sohn, Myung-Kyu Choi, +2 authors, Jaeseung Jeong.
PLoS Comput Biol, 2011 Jun 01; 7(5). PMID: 21625578    Free PMC article.
Dynamical patterns of cattle trade movements.
Paolo Bajardi, Alain Barrat, +2 authors, Vittoria Colizza.
PLoS One, 2011 Jun 01; 6(5). PMID: 21625633    Free PMC article.
Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis.
Fred Y Peng, Randall J Weselake.
BMC Genomics, 2011 Jun 04; 12. PMID: 21635767    Free PMC article.
Automated discrimination of brain pathological state attending to complex structural brain network properties: the shiverer mutant mouse case.
Yasser Iturria-Medina, Alejandro Pérez Fernández, +5 authors, Marlis Ontivero Ortega.
PLoS One, 2011 Jun 04; 6(5). PMID: 21637753    Free PMC article.
Effect of the topology and delayed interactions in neuronal networks synchronization.
Toni Pérez, Guadalupe C Garcia, +3 authors, Claudio Mirasso.
PLoS One, 2011 Jun 04; 6(5). PMID: 21637767    Free PMC article.
Failure tolerance of motif structure in biological networks.
Baharan Mirzasoleiman, Mahdi Jalili.
PLoS One, 2011 Jun 04; 6(5). PMID: 21637829    Free PMC article.
Exponential random graph modeling for complex brain networks.
Sean L Simpson, Satoru Hayasaka, Paul J Laurienti.
PLoS One, 2011 Jun 08; 6(5). PMID: 21647450    Free PMC article.
Axelrod's metanorm games on networks.
José M Galán, Maciej M Łatek, Seyed M Mussavi Rizi.
PLoS One, 2011 Jun 10; 6(5). PMID: 21655211    Free PMC article.
Network Sampling and Classification:An Investigation of Network Model Representations.
Edoardo M Airoldi, Xue Bai, Kathleen M Carley.
Decis Support Syst, 2011 Jun 15; 51(3). PMID: 21666773    Free PMC article.
Neurobiologically realistic determinants of self-organized criticality in networks of spiking neurons.
Mikail Rubinov, Olaf Sporns, Jean-Philippe Thivierge, Michael Breakspear.
PLoS Comput Biol, 2011 Jun 16; 7(6). PMID: 21673863    Free PMC article.
Wave speed in excitable random networks with spatially constrained connections.
Nikita Vladimirov, Roger D Traub, Yuhai Tu.
PLoS One, 2011 Jun 16; 6(6). PMID: 21674028    Free PMC article.
Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement.
Kazuhiro Takemoto, Tatsuya Niwa, Hideki Taguchi.
BMC Syst Biol, 2011 Jun 28; 5. PMID: 21702926    Free PMC article.
Statistical structure of host-phage interactions.
Cesar O Flores, Justin R Meyer, +2 authors, Joshua S Weitz.
Proc Natl Acad Sci U S A, 2011 Jun 29; 108(28). PMID: 21709225    Free PMC article.
Highly Cited.
Is network clustering detectable in transmission trees?
David Welch.
Viruses, 2011 Jul 07; 3(6). PMID: 21731813    Free PMC article.
Exploring brain function from anatomical connectivity.
Gorka Zamora-López, Changsong Zhou, Jürgen Kurths.
Front Neurosci, 2011 Jul 08; 5. PMID: 21734863    Free PMC article.
Leaders in social networks, the Delicious case.
Linyuan Lü, Yi-Cheng Zhang, Chi Ho Yeung, Tao Zhou.
PLoS One, 2011 Jul 09; 6(6). PMID: 21738620    Free PMC article.
Functional network disruption in the degenerative dementias.
Michela Pievani, Willem de Haan, +2 authors, Giovanni B Frisoni.
Lancet Neurol, 2011 Jul 23; 10(9). PMID: 21778116    Free PMC article.
Highly Cited. Review.
Synchronization from second order network connectivity statistics.
Liqiong Zhao, Bryce Beverlin, Theoden Netoff, Duane Q Nykamp.
Front Comput Neurosci, 2011 Jul 23; 5. PMID: 21779239    Free PMC article.
Randomizing genome-scale metabolic networks.
Areejit Samal, Olivier C Martin.
PLoS One, 2011 Jul 23; 6(7). PMID: 21779409    Free PMC article.
Community structure in social networks: applications for epidemiological modelling.
Stephan Kitchovitch, Pietro Liò.
PLoS One, 2011 Jul 27; 6(7). PMID: 21789238    Free PMC article.
Visual working memory load-related changes in neural activity and functional connectivity.
Ling Li, Jin-Xiang Zhang, Tao Jiang.
PLoS One, 2011 Jul 27; 6(7). PMID: 21789253    Free PMC article.
Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.
Jizhong Zhou, Ye Deng, +2 authors, Yunfeng Yang.
mBio, 2011 Jul 28; 2(4). PMID: 21791581    Free PMC article.
Highly Cited.
Upstream dysfunction of somatomotor functional connectivity after corticospinal damage in stroke.
Alex R Carter, Kevin R Patel, +8 authors, Maurizio Corbetta.
Neurorehabil Neural Repair, 2011 Aug 02; 26(1). PMID: 21803932    Free PMC article.
Universal fractal scaling of self-organized networks.
Paul J Laurienti, Karen E Joyce, +2 authors, Satoru Hayasaka.
Physica A, 2011 Aug 03; 390(20). PMID: 21808445    Free PMC article.
On the Influence of Amplitude on the Connectivity between Phases.
Andreas Daffertshofer, Bernadette C M van Wijk.
Front Neuroinform, 2011 Aug 04; 5. PMID: 21811452    Free PMC article.
Integrating temporal and spatial scales: human structural network motifs across age and region of interest size.
Christoph Echtermeyer, Cheol E Han, +3 authors, Marcus Kaiser.
Front Neuroinform, 2011 Aug 04; 5. PMID: 21811454    Free PMC article.
Fast computing betweenness centrality with virtual nodes on large sparse networks.
Jing Yang, Yingwu Chen.
PLoS One, 2011 Aug 06; 6(7). PMID: 21818337    Free PMC article.
Brain network analysis: separating cost from topology using cost-integration.
Cedric E Ginestet, Thomas E Nichols, Ed T Bullmore, Andrew Simmons.
PLoS One, 2011 Aug 11; 6(7). PMID: 21829437    Free PMC article.
Integrative network biology: graph prototyping for co-expression cancer networks.
Karl G Kugler, Laurin A J Mueller, Armin Graber, Matthias Dehmer.
PLoS One, 2011 Aug 11; 6(7). PMID: 21829532    Free PMC article.
Modeling abnormal priming in Alzheimer's patients with a free association network.
Javier Borge-Holthoefer, Yamir Moreno, Alex Arenas.
PLoS One, 2011 Aug 11; 6(8). PMID: 21829639    Free PMC article.
Inferring social network structure from bacterial sequence data.
Mateusz M Pluciński, Richard Starfield, Rodrigo P P Almeida.
PLoS One, 2011 Aug 11; 6(8). PMID: 21829645    Free PMC article.
Evolutionary versatility of eukaryotic protein domains revealed by their bigram networks.
Xueying Xie, Jing Jin, Yongyi Mao.
BMC Evol Biol, 2011 Aug 19; 11. PMID: 21849086    Free PMC article.
Unraveling spurious properties of interaction networks with tailored random networks.
Stephan Bialonski, Martin Wendler, Klaus Lehnertz.
PLoS One, 2011 Aug 19; 6(8). PMID: 21850239    Free PMC article.
Information diversity in structure and dynamics of simulated neuronal networks.
Tuomo Mäki-Marttunen, Jugoslava Aćimović, +4 authors, Marja-Leena Linne.
Front Comput Neurosci, 2011 Aug 20; 5. PMID: 21852970    Free PMC article.
Modulation of the brain's functional network architecture in the transition from wake to sleep.
Linda J Larson-Prior, Jonathan D Power, +7 authors, Steven E Petersen.
Prog Brain Res, 2011 Aug 23; 193. PMID: 21854969    Free PMC article.
Duality between time series and networks.
Andriana S L O Campanharo, M Irmak Sirer, +2 authors, Luís A Nunes Amaral.
PLoS One, 2011 Aug 23; 6(8). PMID: 21858093    Free PMC article.
Driving and driven architectures of directed small-world human brain functional networks.
Chaogan Yan, Yong He.
PLoS One, 2011 Aug 23; 6(8). PMID: 21858129    Free PMC article.
Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs.
Fergal Casey, Nevan Krogan, Denis C Shields, Gerard Cagney.
BMC Syst Biol, 2011 Aug 24; 5. PMID: 21859460    Free PMC article.
Cross-modal responses in the primary visual cortex encode complex objects and correlate with tactile discrimination.
Nivaldo Vasconcelos, Janaina Pantoja, +8 authors, Sidarta Ribeiro.
Proc Natl Acad Sci U S A, 2011 Aug 31; 108(37). PMID: 21876148    Free PMC article.
Analyzing inner and outer synchronization between two coupled discrete-time networks with time delays.
Weigang Sun, Rubin Wang, Weixiang Wang, Jianting Cao.
Cogn Neurodyn, 2011 Sep 03; 4(3). PMID: 21886675    Free PMC article.
Functional Brain Network Characterization and Adaptivity during Task Practice in Healthy Volunteers and People with Schizophrenia.
Shennan Aibel Weiss, Danielle S Bassett, +4 authors, Richard Coppola.
Front Hum Neurosci, 2011 Sep 03; 5. PMID: 21887140    Free PMC article.
Dominating biological networks.
Tijana Milenković, Vesna Memišević, Anthony Bonato, Nataša Pržulj.
PLoS One, 2011 Sep 03; 6(8). PMID: 21887225    Free PMC article.
Semi-Markov graph dynamics.
Marco Raberto, Fabio Rapallo, Enrico Scalas.
PLoS One, 2011 Sep 03; 6(8). PMID: 21887245    Free PMC article.
Towards online multiresolution community detection in large-scale networks.
Jianbin Huang, Heli Sun, +2 authors, Tim Weninger.
PLoS One, 2011 Sep 03; 6(8). PMID: 21887325    Free PMC article.
Global and local features of semantic networks: evidence from the Hebrew mental lexicon.
Yoed N Kenett, Dror Y Kenett, Eshel Ben-Jacob, Miriam Faust.
PLoS One, 2011 Sep 03; 6(8). PMID: 21887343    Free PMC article.
The Network Autocorrelation Model using Two-mode Data: Affiliation Exposure and Potential Bias in the Autocorrelation Parameter.
Kayo Fujimoto, Chih-Ping Chou, Thomas W Valente.
Soc Networks, 2011 Sep 13; 33(3). PMID: 21909184    Free PMC article.
Identification of candidate genes related to bovine marbling using protein-protein interaction networks.
Dajeong Lim, Nam-Kuk Kim, +5 authors, Heebal Kim.
Int J Biol Sci, 2011 Sep 14; 7(7). PMID: 21912507    Free PMC article.
The wiring economy principle: connectivity determines anatomy in the human brain.
Ashish Raj, Yu-hsien Chen.
PLoS One, 2011 Sep 15; 6(9). PMID: 21915250    Free PMC article.
Introduction to network analysis in systems biology.
Avi Ma'ayan.
Sci Signal, 2011 Sep 16; 4(190). PMID: 21917719    Free PMC article.
Causal Network Inference Via Group Sparse Regularization.
Andrew Bolstad, Barry D Van Veen, Robert Nowak.
IEEE Trans Signal Process, 2011 Sep 16; 59(6). PMID: 21918591    Free PMC article.
Functional roles of alpha-band phase synchronization in local and large-scale cortical networks.
Satu Palva, J Matias Palva.
Front Psychol, 2011 Sep 17; 2. PMID: 21922012    Free PMC article.
Highly Cited.
Systems biology and the future of medicine.
Joseph Loscalzo, Albert-Laszlo Barabasi.
Wiley Interdiscip Rev Syst Biol Med, 2011 Sep 20; 3(6). PMID: 21928407    Free PMC article.
Happy aged people are all alike, while every unhappy aged person is unhappy in its own way.
Michele Tumminello, Salvatore Miccichè, +4 authors, Rosario N Mantegna.
PLoS One, 2011 Sep 21; 6(9). PMID: 21931596    Free PMC article.
Prediction of protein-binding areas by small-world residue networks and application to docking.
Carles Pons, Fabian Glaser, Juan Fernandez-Recio.
BMC Bioinformatics, 2011 Sep 29; 12. PMID: 21943333    Free PMC article.
Towards an integrated understanding of the structural characteristics of protein residue networks.
Susan Khor.
Theory Biosci, 2011 Sep 29; 131(2). PMID: 21948188
Intrinsic curvature: a marker of millimeter-scale tangential cortico-cortical connectivity?
Lisa Ronan, Rudolph Pienaar, +6 authors, Paul C Fletcher.
Int J Neural Syst, 2011 Oct 01; 21(5). PMID: 21956929    Free PMC article.
Alteration and reorganization of functional networks: a new perspective in brain injury study.
Nazareth P Castellanos, Ricardo Bajo, +5 authors, Fernando Maestú.
Front Hum Neurosci, 2011 Oct 01; 5. PMID: 21960965    Free PMC article.
Development trends of white matter connectivity in the first years of life.
Pew-Thian Yap, Yong Fan, +3 authors, Dinggang Shen.
PLoS One, 2011 Oct 04; 6(9). PMID: 21966364    Free PMC article.
Temporal and spatial evolution of brain network topology during the first two years of life.
Wei Gao, John H Gilmore, +4 authors, Weili Lin.
PLoS One, 2011 Oct 04; 6(9). PMID: 21966479    Free PMC article.
Highly Cited.
Edge-based compartmental modelling for infectious disease spread.
Joel C Miller, Anja C Slim, Erik M Volz.
J R Soc Interface, 2011 Oct 07; 9(70). PMID: 21976638    Free PMC article.
Altered topological properties of functional network connectivity in schizophrenia during resting state: a small-world brain network study.
Qingbao Yu, Jing Sui, +5 authors, Vince D Calhoun.
PLoS One, 2011 Oct 08; 6(9). PMID: 21980454    Free PMC article.
Prosperity is associated with instability in dynamical networks.
Matteo Cavaliere, Sean Sedwards, +2 authors, Attila Csikász-Nagy.
J Theor Biol, 2011 Oct 11; 299. PMID: 21983567    Free PMC article.
Changes in cognitive state alter human functional brain networks.
Malaak Nasser Moussa, Crystal D Vechlekar, +3 authors, Paul J Laurienti.
Front Hum Neurosci, 2011 Oct 13; 5. PMID: 21991252    Free PMC article.
Engineered neuronal circuits: a new platform for studying the role of modular topology.
Mark Shein-Idelson, Eshel Ben-Jacob, Yael Hanein.
Front Neuroeng, 2011 Oct 13; 4. PMID: 21991254    Free PMC article.
A perimotor framework reveals functional segmentation in the motoneuronal network controlling locomotion in Caenorhabditis elegans.
Gal Haspel, Michael J O'Donovan.
J Neurosci, 2011 Oct 14; 31(41). PMID: 21994377    Free PMC article.
A network-based approach to classify the three domains of life.
Laurin A J Mueller, Karl G Kugler, +2 authors, Matthias Dehmer.
Biol Direct, 2011 Oct 15; 6. PMID: 21995640    Free PMC article.
A multilayer evaluation approach for protein structure prediction and model quality assessment.
Jingfen Zhang, Qingguo Wang, +5 authors, Dong Xu.
Proteins, 2011 Oct 15; 79 Suppl 10. PMID: 21997706    Free PMC article.
Clustering in large networks does not promote upstream reciprocity.
Naoki Masuda.
PLoS One, 2011 Oct 15; 6(10). PMID: 21998641    Free PMC article.
Topological isomorphisms of human brain and financial market networks.
Petra E Vértes, Ruth M Nicol, +3 authors, Edward T Bullmore.
Front Syst Neurosci, 2011 Oct 19; 5. PMID: 22007161    Free PMC article.
Altered resting state complexity in schizophrenia.
Danielle S Bassett, Brent G Nelson, +2 authors, Kelvin O Lim.
Neuroimage, 2011 Oct 20; 59(3). PMID: 22008374    Free PMC article.
Highly Cited.
Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection.
Konstantina Dimitrakopoulou, Charalampos Tsimpouris, +5 authors, Anastasios Bezerianos.
J Clin Bioinforma, 2011 Oct 25; 1. PMID: 22017961    Free PMC article.
A network control theory approach to modeling and optimal control of zoonoses: case study of brucellosis transmission in sub-Saharan Africa.
Sandip Roy, Terry F McElwain, Yan Wan.
PLoS Negl Trop Dis, 2011 Oct 25; 5(10). PMID: 22022621    Free PMC article.
Interaction between dysfunctional connectivity at rest and heroin cues-induced brain responses in male abstinent heroin-dependent individuals.
Jixin Liu, Wei Qin, +8 authors, Jie Tian.
PLoS One, 2011 Oct 27; 6(10). PMID: 22028765    Free PMC article.
Topological structure of the space of phenotypes: the case of RNA neutral networks.
Jacobo Aguirre, Javier M Buldú, Michael Stich, Susanna C Manrubia.
PLoS One, 2011 Oct 27; 6(10). PMID: 22028856    Free PMC article.
Topological fractionation of resting-state networks.
Ju-Rong Ding, Wei Liao, +5 authors, Huafu Chen.
PLoS One, 2011 Oct 27; 6(10). PMID: 22028917    Free PMC article.
Social network architecture and the maintenance of deleterious cultural traits.
Sam Yeaman, Alana Schick, Laurent Lehmann.
J R Soc Interface, 2011 Oct 28; 9(70). PMID: 22031730    Free PMC article.
gViz, a novel tool for the visualization of co-expression networks.
Raphaël Helaers, Eric Bareke, +4 authors, Eric Depiereux.
BMC Res Notes, 2011 Oct 29; 4. PMID: 22032859    Free PMC article.
Genetic dissection of the biotic stress response using a genome-scale gene network for rice.
Insuk Lee, Young-Su Seo, +4 authors, Pamela C Ronald.
Proc Natl Acad Sci U S A, 2011 Nov 02; 108(45). PMID: 22042862    Free PMC article.
Emergence of persistent networks in long-term intracranial EEG recordings.
Mark A Kramer, Uri T Eden, +3 authors, Sydney S Cash.
J Neurosci, 2011 Nov 04; 31(44). PMID: 22049419    Free PMC article.
Gender-related differences in the dysfunctional resting networks of migraine suffers.
Jixin Liu, Wei Qin, +12 authors, Jie Tian.
PLoS One, 2011 Nov 11; 6(11). PMID: 22073251    Free PMC article.
Dissecting phosphorylation networks: lessons learned from yeast.
Janine Mok, Xiaowei Zhu, Michael Snyder.
Expert Rev Proteomics, 2011 Nov 18; 8(6). PMID: 22087660    Free PMC article.
Review.
Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model.
Shinya Ito, Michael E Hansen, +3 authors, John M Beggs.
PLoS One, 2011 Nov 22; 6(11). PMID: 22102894    Free PMC article.
Evolution of a modular software network.
Miguel A Fortuna, Juan A Bonachela, Simon A Levin.
Proc Natl Acad Sci U S A, 2011 Nov 23; 108(50). PMID: 22106260    Free PMC article.
Identifying and characterizing nodes important to community structure using the spectrum of the graph.
Yang Wang, Zengru Di, Ying Fan.
PLoS One, 2011 Nov 24; 6(11). PMID: 22110644    Free PMC article.
Human communication dynamics in digital footsteps: a study of the agreement between self-reported ties and email networks.
Stefan Wuchty, Brian Uzzi.
PLoS One, 2011 Nov 25; 6(11). PMID: 22114665    Free PMC article.
The small world of psychopathology.
Denny Borsboom, Angélique O J Cramer, +2 authors, Lourens J Waldorp.
PLoS One, 2011 Nov 25; 6(11). PMID: 22114671    Free PMC article.
Highly Cited.
Optimal link removal for epidemic mitigation: a two-way partitioning approach.
Eva A Enns, Jeffrey J Mounzer, Margaret L Brandeau.
Math Biosci, 2011 Nov 26; 235(2). PMID: 22115862    Free PMC article.
Dynamical changes in neurons during seizures determine tonic to clonic shift.
Bryce Beverlin, James Kakalios, Duane Nykamp, Theoden Ivan Netoff.
J Comput Neurosci, 2011 Dec 01; 33(1). PMID: 22127761
Guiding the self-organization of random Boolean networks.
Carlos Gershenson.
Theory Biosci, 2011 Dec 01; 131(3). PMID: 22127955    Free PMC article.
Review.
Spontaneous brain activity observed with functional magnetic resonance imaging as a potential biomarker in neuropsychiatric disorders.
Yuan Zhou, Kun Wang, +3 authors, Tianzi Jiang.
Cogn Neurodyn, 2011 Dec 02; 4(4). PMID: 22132039    Free PMC article.
Neuronal chains for actions in the parietal lobe: a computational model.
Fabian Chersi, Pier Francesco Ferrari, Leonardo Fogassi.
PLoS One, 2011 Dec 06; 6(11). PMID: 22140455    Free PMC article.
Estimation of functional connectivity in fMRI data using stability selection-based sparse partial correlation with elastic net penalty.
Srikanth Ryali, Tianwen Chen, Kaustubh Supekar, Vinod Menon.
Neuroimage, 2011 Dec 14; 59(4). PMID: 22155039    Free PMC article.
Correlation network analysis applied to complex biofilm communities.
Ana E Duran-Pinedo, Bruce Paster, Ricardo Teles, Jorge Frias-Lopez.
PLoS One, 2011 Dec 14; 6(12). PMID: 22163302    Free PMC article.
Fast reconfiguration of high-frequency brain networks in response to surprising changes in auditory input.
Ruth M Nicol, Sandra C Chapman, +4 authors, Edward T Bullmore.
J Neurophysiol, 2011 Dec 16; 107(5). PMID: 22170972    Free PMC article.
Exploring the factors contributing to sibling correlations in BMI: a study using the Panel Study of Income Dynamics.
Heather W Brown, Jennifer Roberts.
Obesity (Silver Spring), 2011 Dec 17; 20(5). PMID: 22173572    Free PMC article.
Simulating retrieval from a highly clustered network: implications for spoken word recognition.
Michael S Vitevitch, Gunes Ercal, Bhargav Adagarla.
Front Psychol, 2011 Dec 17; 2. PMID: 22174705    Free PMC article.
Abnormal reorganization of functional cortical small-world networks in focal hand dystonia.
Seung-Hyun Jin, Peter Lin, Mark Hallett.
PLoS One, 2011 Dec 17; 6(12). PMID: 22174867    Free PMC article.
Collaborative learning in networks.
Winter Mason, Duncan J Watts.
Proc Natl Acad Sci U S A, 2011 Dec 21; 109(3). PMID: 22184216    Free PMC article.
A densely interconnected genome-wide network of microRNAs and oncogenic pathways revealed using gene expression signatures.
Chia Huey Ooi, Hue Kian Oh, +7 authors, Patrick Tan.
PLoS Genet, 2011 Dec 24; 7(12). PMID: 22194702    Free PMC article.
Renormalization group for critical phenomena in complex networks.
S Boettcher, C T Brunson.
Front Physiol, 2011 Dec 24; 2. PMID: 22194725    Free PMC article.
Entropy of dynamical social networks.
Kun Zhao, Márton Karsai, Ginestra Bianconi.
PLoS One, 2011 Dec 24; 6(12). PMID: 22194809    Free PMC article.
Temporal evolution of biomedical research grant collaborations across multiple scales--a CTSA baseline study.
Radhakrishnan Nagarajan, Curtis L Lowery, William R Hogan.
AMIA Annu Symp Proc, 2011 Dec 24; 2011. PMID: 22195158    Free PMC article.
Evolutionary constraints on visual cortex architecture from the dynamics of hallucinations.
Thomas Charles Butler, Marc Benayoun, +3 authors, Jack Cowan.
Proc Natl Acad Sci U S A, 2011 Dec 29; 109(2). PMID: 22203969    Free PMC article.
Common and unique network dynamics in football games.
Yuji Yamamoto, Keiko Yokoyama.
PLoS One, 2012 Jan 05; 6(12). PMID: 22216336    Free PMC article.
Prediction and characterization of protein-protein interaction networks in swine.
Fen Wang, Min Liu, +5 authors, Deli Zhang.
Proteome Sci, 2012 Jan 11; 10(1). PMID: 22230699    Free PMC article.
Epilepsy as a disorder of cortical network organization.
Mark A Kramer, Sydney S Cash.
Neuroscientist, 2012 Jan 12; 18(4). PMID: 22235060    Free PMC article.
Highly Cited. Review.
Remotely sensed image classification by complex network eigenvalue and connected degree.
Mengxi Xu, Chenglin Wei.
Comput Math Methods Med, 2012 Jan 14; 2012. PMID: 22242041    Free PMC article.
State-dependent precursors of seizures in correlation-based functional networks of electrocorticograms of patients with temporal lobe epilepsy.
Hirokazu Takahashi, Shuhei Takahashi, Ryohei Kanzaki, Kensuke Kawai.
Neurol Sci, 2012 Jan 25; 33(6). PMID: 22271261
The anatomical distance of functional connections predicts brain network topology in health and schizophrenia.
Aaron F Alexander-Bloch, Petra E Vértes, +6 authors, Nitin Gogtay.
Cereb Cortex, 2012 Jan 26; 23(1). PMID: 22275481    Free PMC article.
Highly Cited.
Information-selectivity of Beta-amyloid pathology in an associative memory model.
Mark Rowan.
Front Comput Neurosci, 2012 Jan 27; 6. PMID: 22279434    Free PMC article.
An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks.
Sean L Simpson, Malaak N Moussa, Paul J Laurienti.
Neuroimage, 2012 Jan 28; 60(2). PMID: 22281670    Free PMC article.
Tinnitus: network pathophysiology-network pharmacology.
Ana B Elgoyhen, Berthold Langguth, Sven Vanneste, Dirk De Ridder.
Front Syst Neurosci, 2012 Feb 01; 6. PMID: 22291622    Free PMC article.
Mapping the Alzheimer's brain with connectomics.
Teng Xie, Yong He.
Front Psychiatry, 2012 Feb 01; 2. PMID: 22291664    Free PMC article.
A small world of weak ties provides optimal global integration of self-similar modules in functional brain networks.
Lazaros K Gallos, Hernán A Makse, Mariano Sigman.
Proc Natl Acad Sci U S A, 2012 Feb 07; 109(8). PMID: 22308319    Free PMC article.
Highly Cited.
Combining graph and machine learning methods to analyze differences in functional connectivity across sex.
R Casanova, C T Whitlow, +2 authors, J A Maldjian.
Open Neuroimag J, 2012 Feb 09; 6. PMID: 22312418    Free PMC article.
Factors affecting the cerebral network in brain tumor patients.
Jan J Heimans, Jaap C Reijneveld.
J Neurooncol, 2012 Feb 15; 108(2). PMID: 22331519    Free PMC article.
Global microRNA level regulation of EGFR-driven cell-cycle protein network in breast cancer.
Stefan Uhlmann, Heiko Mannsperger, +10 authors, Ozgür Sahin.
Mol Syst Biol, 2012 Feb 16; 8. PMID: 22333974    Free PMC article.
Highly Cited.
Towards the "baby connectome": mapping the structural connectivity of the newborn brain.
Olga Tymofiyeva, Christopher P Hess, +6 authors, Duan Xu.
PLoS One, 2012 Feb 22; 7(2). PMID: 22347423    Free PMC article.
Exploring and challenging the network of angiogenesis.
Raúl Montañez, Francisca Sánchez-Jiménez, Ana R Quesada, Miguel Ángel Medina.
Sci Rep, 2012 Feb 23; 1. PMID: 22355580    Free PMC article.
Emergence of structural patterns out of synchronization in networks with competitive interactions.
Salvatore Assenza, Ricardo Gutiérrez, +2 authors, Stefano Boccaletti.
Sci Rep, 2012 Feb 23; 1. PMID: 22355617    Free PMC article.
Controlling centrality in complex networks.
V Nicosia, R Criado, +2 authors, V Latora.
Sci Rep, 2012 Feb 23; 2. PMID: 22355732    Free PMC article.
Dynamical robustness in complex networks: the crucial role of low-degree nodes.
Gouhei Tanaka, Kai Morino, Kazuyuki Aihara.
Sci Rep, 2012 Feb 23; 2. PMID: 22355746    Free PMC article.
Hepatitis C virus antigenic convergence.
David S Campo, Zoya Dimitrova, +4 authors, Yury Khudyakov.
Sci Rep, 2012 Feb 23; 2. PMID: 22355779    Free PMC article.
Large-scale cortical network properties predict future sound-to-word learning success.
John Patrick Sheppard, Ji-Ping Wang, Patrick C M Wong.
J Cogn Neurosci, 2012 Mar 01; 24(5). PMID: 22360625    Free PMC article.
Epidemic protection zones: centred on cases or based on connectivity?
A L Rivas, F O Fasina, +5 authors, D J Perkins.
Transbound Emerg Dis, 2012 Mar 01; 59(5). PMID: 22360843    Free PMC article.
Transmission of infectious diseases en route to habitat hotspots.
Julio Benavides, Peter D Walsh, +2 authors, Damien Caillaud.
PLoS One, 2012 Mar 01; 7(2). PMID: 22363606    Free PMC article.
Discovery of intramolecular signal transduction network based on a new protein dynamics model of energy dissipation.
Cheng-Wei Ma, Zhi-Long Xiu, An-Ping Zeng.
PLoS One, 2012 Mar 01; 7(2). PMID: 22363664    Free PMC article.
Viruses and interactomes in translation.
Laurène Meyniel-Schicklin, Benoît de Chassey, Patrice André, Vincent Lotteau.
Mol Cell Proteomics, 2012 Mar 01; 11(7). PMID: 22371486    Free PMC article.
Diagnosing the decline in pharmaceutical R&D efficiency.
Jack W Scannell, Alex Blanckley, Helen Boldon, Brian Warrington.
Nat Rev Drug Discov, 2012 Mar 02; 11(3). PMID: 22378269
Highly Cited. Review.
Dynamics and processing in finite self-similar networks.
Simon DeDeo, David C Krakauer.
J R Soc Interface, 2012 Mar 02; 9(74). PMID: 22378750    Free PMC article.
A measure of individual role in collective dynamics.
Konstantin Klemm, M Ángeles Serrano, Víctor M Eguíluz, Maxi San Miguel.
Sci Rep, 2012 Mar 02; 2. PMID: 22379597    Free PMC article.
Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit.
Michael T Schaub, Jean-Charles Delvenne, Sophia N Yaliraki, Mauricio Barahona.
PLoS One, 2012 Mar 03; 7(2). PMID: 22384178    Free PMC article.
Multiscale feature analysis of salivary gland branching morphogenesis.
Cemal Cagatay Bilgin, Shayoni Ray, +3 authors, Bülent Yener.
PLoS One, 2012 Mar 10; 7(3). PMID: 22403724    Free PMC article.
Functional MRI and diffusion tensor imaging of brain reorganization after experimental stroke.
Rick M Dijkhuizen, Kajo van der Marel, +4 authors, Maurits P A van Meer.
Transl Stroke Res, 2012 Mar 13; 3(1). PMID: 22408692    Free PMC article.
Inferring epidemic contact structure from phylogenetic trees.
Gabriel E Leventhal, Roger Kouyos, +7 authors, Sebastian Bonhoeffer.
PLoS Comput Biol, 2012 Mar 14; 8(3). PMID: 22412361    Free PMC article.
Effects of different correlation metrics and preprocessing factors on small-world brain functional networks: a resting-state functional MRI study.
Xia Liang, Jinhui Wang, +4 authors, Yong He.
PLoS One, 2012 Mar 14; 7(3). PMID: 22412922    Free PMC article.
Highly Cited.
A small world of citations? The influence of collaboration networks on citation practices.
Matthew L Wallace, Vincent Larivière, Yves Gingras.
PLoS One, 2012 Mar 14; 7(3). PMID: 22413016    Free PMC article.
Topological analysis and interactive visualization of biological networks and protein structures.
Nadezhda T Doncheva, Yassen Assenov, Francisco S Domingues, Mario Albrecht.
Nat Protoc, 2012 Mar 17; 7(4). PMID: 22422314
Highly Cited.
Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus.
Marc Hafner, Heinz Koeppl, Didier Gonze.
PLoS Comput Biol, 2012 Mar 17; 8(3). PMID: 22423219    Free PMC article.
Exploration and modulation of brain network interactions with noninvasive brain stimulation in combination with neuroimaging.
Mouhsin M Shafi, M Brandon Westover, Michael D Fox, Alvaro Pascual-Leone.
Eur J Neurosci, 2012 Mar 21; 35(6). PMID: 22429242    Free PMC article.
Review.
The brain as a complex system: using network science as a tool for understanding the brain.
Qawi K Telesford, Sean L Simpson, +2 authors, Paul J Laurienti.
Brain Connect, 2011 Jan 01; 1(4). PMID: 22432419    Free PMC article.
Review.
The ubiquity of small-world networks.
Qawi K Telesford, Karen E Joyce, +2 authors, Paul J Laurienti.
Brain Connect, 2011 Jan 01; 1(5). PMID: 22432451    Free PMC article.
Structural network topology revealed by white matter tractography in cannabis users: a graph theoretical analysis.
Dae-Jin Kim, Patrick D Skosnik, +8 authors, Sharlene D Newman.
Brain Connect, 2012 Mar 22; 1(6). PMID: 22432904    Free PMC article.
Predicting regional neurodegeneration from the healthy brain functional connectome.
Juan Zhou, Efstathios D Gennatas, +2 authors, William W Seeley.
Neuron, 2012 Mar 27; 73(6). PMID: 22445348    Free PMC article.
Highly Cited.
Disrupted small-world brain networks in moderate Alzheimer's disease: a resting-state FMRI study.
Xiaohu Zhao, Yong Liu, +6 authors, Peijun Wang.
PLoS One, 2012 Mar 30; 7(3). PMID: 22457774    Free PMC article.
An optimally evolved connective ratio of neural networks that maximizes the occurrence of synchronized bursting behavior.
Chao-Yi Dong, Kwang-Hyun Cho.
BMC Syst Biol, 2012 Apr 03; 6. PMID: 22462685    Free PMC article.
Simple models of human brain functional networks.
Petra E Vértes, Aaron F Alexander-Bloch, +3 authors, Edward T Bullmore.
Proc Natl Acad Sci U S A, 2012 Apr 03; 109(15). PMID: 22467830    Free PMC article.
Highly Cited.
Consensus clustering in complex networks.
Andrea Lancichinetti, Santo Fortunato.
Sci Rep, 2012 Apr 03; 2. PMID: 22468223    Free PMC article.
Highly Cited.
Interactomic and pharmacological insights on human sirt-1.
Ankush Sharma, Vasu Gautam, +2 authors, Giovanni Colonna.
Front Pharmacol, 2012 Apr 04; 3. PMID: 22470339    Free PMC article.
Activity-dependent neuronal model on complex networks.
Lucilla de Arcangelis, Hans J Herrmann.
Front Physiol, 2012 Apr 04; 3. PMID: 22470347    Free PMC article.
Hierarchy measure for complex networks.
Enys Mones, Lilla Vicsek, Tamás Vicsek.
PLoS One, 2012 Apr 04; 7(3). PMID: 22470477    Free PMC article.
Fragmentation: loss of global coherence or breakdown of modularity in functional brain architecture?
Daan van den Berg, Pulin Gong, Michael Breakspear, Cees van Leeuwen.
Front Syst Neurosci, 2012 Apr 06; 6. PMID: 22479239    Free PMC article.
Emergent functional properties of neuronal networks with controlled topology.
Emanuele Marconi, Thierry Nieus, +7 authors, Fabio Benfenati.
PLoS One, 2012 Apr 12; 7(4). PMID: 22493706    Free PMC article.
One plus one makes three (for social networks).
Emőke-Ágnes Horvát, Emöke-Ágnes Horvát, +2 authors, Katharina A Zweig.
PLoS One, 2012 Apr 12; 7(4). PMID: 22493713    Free PMC article.
The economy of brain network organization.
Ed Bullmore, Olaf Sporns.
Nat Rev Neurosci, 2012 Apr 14; 13(5). PMID: 22498897
Highly Cited. Review.
Altered structural brain connectivity in healthy carriers of the autism risk gene, CNTNAP2.
Emily L Dennis, Neda Jahanshad, +11 authors, Paul M Thompson.
Brain Connect, 2011 Jan 01; 1(6). PMID: 22500773    Free PMC article.
Viewing Angle Classification of Cryo-Electron Microscopy Images Using Eigenvectors.
A Singer, Z Zhao, Y Shkolnisky, R Hadani.
SIAM J Imaging Sci, 2012 Apr 17; 4(2). PMID: 22506089    Free PMC article.
Simple model systems: a challenge for Alzheimer's disease.
Marta Di Carlo.
Immun Ageing, 2012 Apr 18; 9(1). PMID: 22507659    Free PMC article.
Ordinary percolation with discontinuous transitions.
Stefan Boettcher, Vijay Singh, Robert M Ziff.
Nat Commun, 2012 Apr 19; 3. PMID: 22510692
The impact of imitation on vaccination behavior in social contact networks.
Martial L Ndeffo Mbah, Jingzhou Liu, +4 authors, Alison P Galvani.
PLoS Comput Biol, 2012 Apr 19; 8(4). PMID: 22511859    Free PMC article.
Emergent bursting and synchrony in computer simulations of neuronal cultures.
Niru Maheswaranathan, Silvia Ferrari, Antonius M J Vandongen, Craig S Henriquez.
Front Comput Neurosci, 2012 Apr 20; 6. PMID: 22514531    Free PMC article.
The major transitions of life from a network perspective.
Béla Suki.
Front Physiol, 2012 Apr 20; 3. PMID: 22514542    Free PMC article.
Molecular codes for neuronal individuality and cell assembly in the brain.
Takeshi Yagi.
Front Mol Neurosci, 2012 Apr 21; 5. PMID: 22518100    Free PMC article.
Composition and structure of a large online social network in The Netherlands.
Rense Corten.
PLoS One, 2012 Apr 24; 7(4). PMID: 22523557    Free PMC article.
Hippocampal sleep features: relations to human memory function.
Michele Ferrara, Fabio Moroni, Luigi De Gennaro, Lino Nobili.
Front Neurol, 2012 Apr 25; 3. PMID: 22529835    Free PMC article.
Limitations of gene duplication models: evolution of modules in protein interaction networks.
Frank Emmert-Streib.
PLoS One, 2012 Apr 25; 7(4). PMID: 22530042    Free PMC article.
Social Network Visualization in Epidemiology.
Nicholas A Christakis, James H Fowler.
Nor Epidemiol, 2009 Jan 01; 19(1). PMID: 22544996    Free PMC article.
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.
Jason E McDermott, Deborah L Diamond, +3 authors, Katrina M Waters.
BMC Syst Biol, 2012 May 02; 6. PMID: 22546282    Free PMC article.
EEG-based functional brain networks: does the network size matter?
Amir Joudaki, Niloufar Salehi, Mahdi Jalili, Maria G Knyazeva.
PLoS One, 2012 May 05; 7(4). PMID: 22558196    Free PMC article.
EpiFire: An open source C++ library and application for contact network epidemiology.
Thomas Hladish, Eugene Melamud, +2 authors, Lauren Ancel Meyers.
BMC Bioinformatics, 2012 May 09; 13. PMID: 22559915    Free PMC article.
Inferring functional neural connectivity with phase synchronization analysis: a review of methodology.
Junfeng Sun, Zhijun Li, Shanbao Tong.
Comput Math Methods Med, 2012 May 12; 2012. PMID: 22577470    Free PMC article.
Review.
Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human.
Marek Ostaszewski, Serge Eifes, Antonio del Sol.
PLoS One, 2012 May 12; 7(5). PMID: 22577488    Free PMC article.
A dynamic network perspective of chronic pain.
Melissa A Farmer, Marwan N Baliki, A Vania Apkarian.
Neurosci Lett, 2012 May 15; 520(2). PMID: 22579823    Free PMC article.
Review.
Population coding in sparsely connected networks of noisy neurons.
Bryan P Tripp, Jeff Orchard.
Front Comput Neurosci, 2012 May 16; 6. PMID: 22586391    Free PMC article.
Recurrent coupling improves discrimination of temporal spike patterns.
Chun-Wei Yuan, Christian Leibold.
Front Comput Neurosci, 2012 May 16; 6. PMID: 22586392    Free PMC article.
The conundrum of functional brain networks: small-world efficiency or fractal modularity.
Lazaros K Gallos, Mariano Sigman, Hernán A Makse.
Front Physiol, 2012 May 16; 3. PMID: 22586406    Free PMC article.
Spreading paths in partially observed social networks.
Jukka-Pekka Onnela, Nicholas A Christakis.
Phys Rev E Stat Nonlin Soft Matter Phys, 2012 May 17; 85(3 Pt 2). PMID: 22587148    Free PMC article.
The Regulatory Network of Pseudomonas aeruginosa.
Edgardo Galán-Vásquez, Beatriz Luna, Agustino Martínez-Antonio.
Microb Inform Exp, 2011 Jan 01; 1(1). PMID: 22587778    Free PMC article.
Exploring statistical and population aspects of network complexity.
Frank Emmert-Streib, Matthias Dehmer.
PLoS One, 2012 May 17; 7(5). PMID: 22590495    Free PMC article.
Anatomical connectivity influences both intra- and inter-brain synchronizations.
Guillaume Dumas, Mario Chavez, Jacqueline Nadel, Jacques Martinerie.
PLoS One, 2012 May 17; 7(5). PMID: 22590539    Free PMC article.
Knotty-centrality: finding the connective core of a complex network.
Murray Shanahan, Mark Wildie.
PLoS One, 2012 May 17; 7(5). PMID: 22590571    Free PMC article.
GIT2 acts as a potential keystone protein in functional hypothalamic networks associated with age-related phenotypic changes in rats.
Wayne Chadwick, Bronwen Martin, +5 authors, Stuart Maudsley.
PLoS One, 2012 May 19; 7(5). PMID: 22606319    Free PMC article.
Altered structural connectivity in neonates at genetic risk for schizophrenia: a combined study using morphological and white matter networks.
Feng Shi, Pew-Thian Yap, +3 authors, Dinggang Shen.
Neuroimage, 2012 May 23; 62(3). PMID: 22613620    Free PMC article.
Emergence of a small-world functional network in cultured neurons.
Julia H Downes, Mark W Hammond, +5 authors, Slawomir J Nasuto.
PLoS Comput Biol, 2012 May 23; 8(5). PMID: 22615555    Free PMC article.
The brain matures with stronger functional connectivity and decreased randomness of its network.
Dirk J A Smit, Maria Boersma, +5 authors, Eco J C de Geus.
PLoS One, 2012 May 23; 7(5). PMID: 22615837    Free PMC article.
Mapping connectivity damage in the case of Phineas Gage.
John Darrell Van Horn, Andrei Irimia, +3 authors, Arthur W Toga.
PLoS One, 2012 May 23; 7(5). PMID: 22616011    Free PMC article.
Computational modeling of epilepsy for an experimental neurologist.
Abbey B Holt, Theoden I Netoff.
Exp Neurol, 2012 May 24; 244. PMID: 22617489    Free PMC article.
Review.
Graph theoretical model of a sensorimotor connectome in zebrafish.
Michael Stobb, Joshua M Peterson, Borbala Mazzag, Ethan Gahtan.
PLoS One, 2012 May 25; 7(5). PMID: 22624008    Free PMC article.
Frontoparietal Connectivity and Hierarchical Structure of the Brain's Functional Network during Sleep.
Victor I Spoormaker, Pablo M Gleiser, Michael Czisch.
Front Neurol, 2012 May 26; 3. PMID: 22629253    Free PMC article.
Characterizing global evolutions of complex systems via intermediate network representations.
Koji Iwayama, Yoshito Hirata, +3 authors, Hideyuki Suzuki.
Sci Rep, 2012 May 29; 2. PMID: 22639731    Free PMC article.
The social network and communicative complexity: preface to theme issue.
Todd M Freeberg, Terry J Ord, Robin I M Dunbar.
Philos Trans R Soc Lond B Biol Sci, 2012 May 30; 367(1597). PMID: 22641817    Free PMC article.
Robust classification of salient links in complex networks.
Daniel Grady, Christian Thiemann, Dirk Brockmann.
Nat Commun, 2012 May 31; 3. PMID: 22643891
Molecular ecological network analyses.
Ye Deng, Yi-Huei Jiang, +3 authors, Jizhong Zhou.
BMC Bioinformatics, 2012 Jun 01; 13. PMID: 22646978    Free PMC article.
Highly Cited.
IntScore: a web tool for confidence scoring of biological interactions.
Atanas Kamburov, Ulrich Stelzl, Ralf Herwig.
Nucleic Acids Res, 2012 Jun 01; 40(Web Server issue). PMID: 22649056    Free PMC article.
Fast and robust image segmentation by small-world neural oscillator networks.
Chunguang Li, Yuke Li.
Cogn Neurodyn, 2012 Jun 02; 5(2). PMID: 22654991    Free PMC article.
Resting-state multi-spectrum functional connectivity networks for identification of MCI patients.
Chong-Yaw Wee, Pew-Thian Yap, +5 authors, Dinggang Shen.
PLoS One, 2012 Jun 06; 7(5). PMID: 22666397    Free PMC article.
Study on TCM Syndrome Identification Modes of Coronary Heart Disease Based on Data Mining.
Qi Shi, Huihui Zhao, +4 authors, Wei Wang.
Evid Based Complement Alternat Med, 2012 Jun 08; 2012. PMID: 22675388    Free PMC article.
Implementation of olfactory bulb glomerular-layer computations in a digital neurosynaptic core.
Nabil Imam, Thomas A Cleland, +4 authors, Dharmendra S Modha.
Front Neurosci, 2012 Jun 12; 6. PMID: 22685425    Free PMC article.
Google in a quantum network.
G D Paparo, M A Martin-Delgado.
Sci Rep, 2012 Jun 12; 2. PMID: 22685626    Free PMC article.
Close encounters of the infectious kind: methods to measure social mixing behaviour.
J M Read, W J Edmunds, +2 authors, D A T Cummings.
Epidemiol Infect, 2012 Jun 13; 140(12). PMID: 22687447    Free PMC article.
Review.
Network methods for describing sample relationships in genomic datasets: application to Huntington's disease.
Michael C Oldham, Peter Langfelder, Steve Horvath.
BMC Syst Biol, 2012 Jun 14; 6. PMID: 22691535    Free PMC article.
Hierarchical ordering of reticular networks.
Yuriy Mileyko, Herbert Edelsbrunner, Charles A Price, Joshua S Weitz.
PLoS One, 2012 Jun 16; 7(6). PMID: 22701559    Free PMC article.
Inferring general relations between network characteristics from specific network ensembles.
Stefano Cardanobile, Volker Pernice, Moritz Deger, Stefan Rotter.
PLoS One, 2012 Jun 16; 7(6). PMID: 22701586    Free PMC article.
Altered small-world brain networks in schizophrenia patients during working memory performance.
Hao He, Jing Sui, +6 authors, Vince D Calhoun.
PLoS One, 2012 Jun 16; 7(6). PMID: 22701611    Free PMC article.
The emergence and maintenance of sickle cell hotspots in the Mediterranean.
Bridget S Penman, Sunetra Gupta, Caroline O Buckee.
Infect Genet Evol, 2012 Jun 19; 12(7). PMID: 22704979    Free PMC article.
Mapping the human connectome.
Arthur W Toga, Kristi A Clark, +2 authors, John Darrell Van Horn.
Neurosurgery, 2012 Jun 19; 71(1). PMID: 22705717    Free PMC article.
MR connectomics: a conceptual framework for studying the developing brain.
Patric Hagmann, Patricia E Grant, Damien A Fair.
Front Syst Neurosci, 2012 Jun 19; 6. PMID: 22707934    Free PMC article.
High-cost, high-capacity backbone for global brain communication.
Martijn P van den Heuvel, René S Kahn, Joaquín Goñi, Olaf Sporns.
Proc Natl Acad Sci U S A, 2012 Jun 20; 109(28). PMID: 22711833    Free PMC article.
Highly Cited.
Sports teams as superorganisms: implications of sociobiological models of behaviour for research and practice in team sports performance analysis.
Ricardo Duarte, Duarte Araújo, Vanda Correia, Keith Davids.
Sports Med, 2012 Jun 22; 42(8). PMID: 22715927
Social encounter networks: collective properties and disease transmission.
Leon Danon, Thomas A House, Jonathan M Read, Matt J Keeling.
J R Soc Interface, 2012 Jun 22; 9(76). PMID: 22718990    Free PMC article.
Network compression as a quality measure for protein interaction networks.
Loic Royer, Matthias Reimann, A Francis Stewart, Michael Schroeder.
PLoS One, 2012 Jun 22; 7(6). PMID: 22719828    Free PMC article.
The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost.
Suzana Herculano-Houzel.
Proc Natl Acad Sci U S A, 2012 Jun 23; 109 Suppl 1. PMID: 22723358    Free PMC article.
Highly Cited. Review.
Gene network effects on brain microstructure and intellectual performance identified in 472 twins.
Ming-Chang Chiang, Marina Barysheva, +8 authors, Paul M Thompson.
J Neurosci, 2012 Jun 23; 32(25). PMID: 22723713    Free PMC article.
Reorganization of Brain Networks in Aging and Age-related Diseases.
Junfeng Sun, Shanbao Tong, Guo-Yuan Yang.
Aging Dis, 2012 Jun 23; 3(2). PMID: 22724079    Free PMC article.
A new measure based on degree distribution that links information theory and network graph analysis.
Michael W Hadley, Matt F McGranaghan, +2 authors, Elaine R Reynolds.
Neural Syst Circuits, 2012 Jun 26; 2(1). PMID: 22726594    Free PMC article.
Taking sociality seriously: the structure of multi-dimensional social networks as a source of information for individuals.
Louise Barrett, S Peter Henzi, David Lusseau.
Philos Trans R Soc Lond B Biol Sci, 2012 Jun 27; 367(1599). PMID: 22734054    Free PMC article.
Network structure and the role of key players in a translational cancer research network: a study protocol.
Janet C Long, Frances C Cunningham, Jeffrey Braithwaite.
BMJ Open, 2012 Jun 27; 2(3). PMID: 22734122    Free PMC article.
Complex network structure influences processing in long-term and short-term memory.
Michael S Vitevitch, Kit Ying Chan, Steven Roodenrys.
J Mem Lang, 2012 Jun 30; 67(1). PMID: 22745522    Free PMC article.
Central role of the EGF receptor in neurometabolic aging.
Sana Siddiqui, Meng Fang, +3 authors, Stuart Maudsley.
Int J Endocrinol, 2012 Jul 04; 2012. PMID: 22754566    Free PMC article.
Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps.
Tak Chien Chiam, Young-Rae Cho.
Proteome Sci, 2012 Jul 05; 10 Suppl 1. PMID: 22759580    Free PMC article.
Statistics of weighted brain networks reveal hierarchical organization and Gaussian degree distribution.
Miloš Ivković, Amy Kuceyeski, Ashish Raj.
PLoS One, 2012 Jul 05; 7(6). PMID: 22761649    Free PMC article.
Altered small-world efficiency of brain functional networks in acupuncture at ST36: a functional MRI study.
Bo Liu, Jun Chen, +8 authors, Yong He.
PLoS One, 2012 Jul 05; 7(6). PMID: 22761766    Free PMC article.
Connecting network properties of rapidly disseminating epizoonotics.
Ariel L Rivas, Folorunso O Fasina, +7 authors, Steven D Smith.
PLoS One, 2012 Jul 05; 7(6). PMID: 22761900    Free PMC article.
Optimal spike-based communication in excitable networks with strong-sparse and weak-dense links.
Jun-nosuke Teramae, Yasuhiro Tsubo, Tomoki Fukai.
Sci Rep, 2012 Jul 05; 2. PMID: 22761993    Free PMC article.
EEG-fMRI Methods for the Study of Brain Networks during Sleep.
Jeff H Duyn.
Front Neurol, 2012 Jul 12; 3. PMID: 22783221    Free PMC article.
Network centrality of metro systems.
Sybil Derrible.
PLoS One, 2012 Jul 14; 7(7). PMID: 22792373    Free PMC article.
Microbial interactions: from networks to models.
Karoline Faust, Jeroen Raes.
Nat Rev Microbiol, 2012 Jul 17; 10(8). PMID: 22796884
Highly Cited. Review.
Nicotine increases brain functional network efficiency.
Korey P Wylie, Donald C Rojas, +2 authors, Jason R Tregellas.
Neuroimage, 2012 Jul 17; 63(1). PMID: 22796985    Free PMC article.
Using computational models to relate structural and functional brain connectivity.
Jaroslav Hlinka, Stephen Coombes.
Eur J Neurosci, 2012 Jul 19; 36(2). PMID: 22805059    Free PMC article.
Microbial co-occurrence relationships in the human microbiome.
Karoline Faust, J Fah Sathirapongsasuti, +4 authors, Curtis Huttenhower.
PLoS Comput Biol, 2012 Jul 19; 8(7). PMID: 22807668    Free PMC article.
Highly Cited.
Characterization of functional and structural integrity in experimental focal epilepsy: reduced network efficiency coincides with white matter changes.
Willem M Otte, Rick M Dijkhuizen, +6 authors, Kees P J Braun.
PLoS One, 2012 Jul 19; 7(7). PMID: 22808026    Free PMC article.
Robustness elasticity in complex networks.
Timothy C Matisziw, Tony H Grubesic, Junyu Guo.
PLoS One, 2012 Jul 19; 7(7). PMID: 22808060    Free PMC article.
Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis.
Rohit Vashisht, Anupam Kumar Mondal, +51 authors, Anshu Bhardwaj.
PLoS One, 2012 Jul 19; 7(7). PMID: 22808064    Free PMC article.
Inferring reputation promotes the evolution of cooperation in spatial social dilemma games.
Zhen Wang, Lin Wang, Zi-Yu Yin, Cheng-Yi Xia.
PLoS One, 2012 Jul 19; 7(7). PMID: 22808120    Free PMC article.
Process-driven inference of biological network structure: feasibility, minimality, and multiplicity.
Guanyu Wang, Yongwu Rong, +4 authors, Chen Zeng.
PLoS One, 2012 Jul 21; 7(7). PMID: 22815739    Free PMC article.
Network analysis of rat spatial cognition: behaviorally-established symmetry in a physically asymmetrical environment.
Shahaf Weiss, Osnat Yaski, +2 authors, Efrat Blumenfeld-Lieberthal.
PLoS One, 2012 Jul 21; 7(7). PMID: 22815808    Free PMC article.
Finding the probability of infection in an SIR network is NP-Hard.
Michael Shapiro, Edgar Delgado-Eckert.
Math Biosci, 2012 Jul 25; 240(2). PMID: 22824138    Free PMC article.
Review.
Evolution of the most common English words and phrases over the centuries.
Matjaz Perc.
J R Soc Interface, 2012 Jul 27; 9(77). PMID: 22832364    Free PMC article.
Enhanced functional networks in absolute pitch.
Psyche Loui, Anna Zamm, Gottfried Schlaug.
Neuroimage, 2012 Jul 28; 63(2). PMID: 22836173    Free PMC article.
Intrinsic organization of the anesthetized brain.
Zhifeng Liang, Jean King, Nanyin Zhang.
J Neurosci, 2012 Jul 28; 32(30). PMID: 22836253    Free PMC article.
Measuring the evolution of contemporary western popular music.
Joan Serrà, Alvaro Corral, +2 authors, Josep Ll Arcos.
Sci Rep, 2012 Jul 28; 2. PMID: 22837813    Free PMC article.
A network-oriented perspective on cardiac calcium signaling.
Christopher H George, Dimitris Parthimos, Nicole C Silvester.
Am J Physiol Cell Physiol, 2012 Jul 31; 303(9). PMID: 22843795    Free PMC article.
Review.
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments.
Luz García-Alonso, Roberto Alonso, +5 authors, Joaquín Dopazo.
Nucleic Acids Res, 2012 Jul 31; 40(20). PMID: 22844098    Free PMC article.
Stability of synchronization clusters and seizurability in temporal lobe epilepsy.
Agostina Palmigiano, Jesús Pastor, Rafael García de Sola, Guillermo J Ortega.
PLoS One, 2012 Jul 31; 7(7). PMID: 22844524    Free PMC article.
HINT: High-quality protein interactomes and their applications in understanding human disease.
Jishnu Das, Haiyuan Yu.
BMC Syst Biol, 2012 Aug 01; 6. PMID: 22846459    Free PMC article.
Highly Cited.
Mapping the mutual information network of enzymatic families in the protein structure to unveil functional features.
Daniel Aguilar, Baldo Oliva, Cristina Marino Buslje.
PLoS One, 2012 Aug 01; 7(7). PMID: 22848494    Free PMC article.
Reduced neural synchrony in patients with restless legs syndrome during a visual oddball task.
Jeong Woo Choi, Deokwon Ko, +2 authors, Kyung Hwan Kim.
PLoS One, 2012 Aug 01; 7(7). PMID: 22848757    Free PMC article.
The development of hub architecture in the human functional brain network.
Kai Hwang, Michael N Hallquist, Beatriz Luna.
Cereb Cortex, 2012 Aug 10; 23(10). PMID: 22875861    Free PMC article.
Highly Cited.
SpecNet: a spatial network algorithm that generates a wide range of specific structures.
Jenny Lennartsson, Nina Håkansson, Uno Wennergren, Annie Jonsson.
PLoS One, 2012 Aug 10; 7(8). PMID: 22876329    Free PMC article.
MEASURING INTER-HEMISPHERIC INTEGRATION IN BIPOLAR AFFECTIVE DISORDER USING BRAIN NETWORK ANALYSES AND HARDI.
A Leow, L Zhan, +8 authors, L Altshuler.
Proc IEEE Int Symp Biomed Imaging, 2012 Aug 21;. PMID: 22902926    Free PMC article.
Systems biology for molecular life sciences and its impact in biomedicine.
Miguel Ángel Medina.
Cell Mol Life Sci, 2012 Aug 21; 70(6). PMID: 22903296
Review.
Cooperation and assortativity with dynamic partner updating.
Jing Wang, Siddharth Suri, Duncan J Watts.
Proc Natl Acad Sci U S A, 2012 Aug 21; 109(36). PMID: 22904193    Free PMC article.
Controlling epidemic spread by social distancing: do it well or not at all.
Savi Maharaj, Adam Kleczkowski.
BMC Public Health, 2012 Aug 22; 12. PMID: 22905965    Free PMC article.
The changing landscape of functional brain networks for face processing in typical development.
Jane E Joseph, Joshua E Swearingen, +5 authors, Ramesh S Bhatt.
Neuroimage, 2012 Aug 22; 63(3). PMID: 22906788    Free PMC article.
Insights into multimodal imaging classification of ADHD.
John B Colby, Jeffrey D Rudie, +3 authors, Zarrar Shehzad.
Front Syst Neurosci, 2012 Aug 23; 6. PMID: 22912605    Free PMC article.
Combining the finite element method with structural connectome-based analysis for modeling neurotrauma: connectome neurotrauma mechanics.
Reuben H Kraft, Phillip Justin McKee, Amy M Dagro, Scott T Grafton.
PLoS Comput Biol, 2012 Aug 24; 8(8). PMID: 22915997    Free PMC article.
How the statistical validation of functional connectivity patterns can prevent erroneous definition of small-world properties of a brain connectivity network.
J Toppi, F De Vico Fallani, +6 authors, L Astolfi.
Comput Math Methods Med, 2012 Aug 25; 2012. PMID: 22919427    Free PMC article.
Voxel scale complex networks of functional connectivity in the rat brain: neurochemical state dependence of global and local topological properties.
Adam J Schwarz, Alessandro Gozzi, Alessandro Chessa, Angelo Bifone.
Comput Math Methods Med, 2012 Aug 25; 2012. PMID: 22919431    Free PMC article.
Critical paths in a metapopulation model of H1N1: Efficiently delaying influenza spreading through flight cancellation.
Jose Marcelino, Marcus Kaiser.
PLoS Curr, 2012 Aug 25; 4. PMID: 22919563    Free PMC article.
Positive-unlabeled learning for disease gene identification.
Peng Yang, Xiao-Li Li, +2 authors, See-Kiong Ng.
Bioinformatics, 2012 Aug 28; 28(20). PMID: 22923290    Free PMC article.
The brain's connective core and its role in animal cognition.
Murray Shanahan.
Philos Trans R Soc Lond B Biol Sci, 2012 Aug 29; 367(1603). PMID: 22927569    Free PMC article.
Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals.
Olav Stetter, Demian Battaglia, Jordi Soriano, Theo Geisel.
PLoS Comput Biol, 2012 Aug 29; 8(8). PMID: 22927808    Free PMC article.
Human matching behavior in social networks: an algorithmic perspective.
Lorenzo Coviello, Massimo Franceschetti, +2 authors, Andrea Vattani.
PLoS One, 2012 Aug 29; 7(8). PMID: 22927918    Free PMC article.
Quantum navigation and ranking in complex networks.
Eduardo Sánchez-Burillo, Jordi Duch, Jesús Gómez-Gardeñes, David Zueco.
Sci Rep, 2012 Aug 30; 2. PMID: 22930671    Free PMC article.
A signal-processing-based approach to time-varying graph analysis for dynamic brain network identification.
Ali Yener Mutlu, Edward Bernat, Selin Aviyente.
Comput Math Methods Med, 2012 Aug 31; 2012. PMID: 22934122    Free PMC article.
Local-based semantic navigation on a networked representation of information.
José A Capitán, Javier Borge-Holthoefer, +4 authors, Alex Arenas.
PLoS One, 2012 Sep 01; 7(8). PMID: 22937081    Free PMC article.
The Integration of the Glutamatergic and the White Matter Hypotheses of Schizophrenia's Etiology.
Alvaro Machado Dias.
Curr Neuropharmacol, 2012 Sep 04; 10(1). PMID: 22942875    Free PMC article.
A complex systems approach to Arabidopsis root stem-cell niche developmental mechanisms: from molecules, to networks, to morphogenesis.
Eugenio Azpeitia, Elena R Alvarez-Buylla.
Plant Mol Biol, 2012 Sep 05; 80(4-5). PMID: 22945341
Review.
Consistency of network modules in resting-state FMRI connectome data.
Malaak N Moussa, Matthew R Steen, Paul J Laurienti, Satoru Hayasaka.
PLoS One, 2012 Sep 07; 7(8). PMID: 22952978    Free PMC article.
Uncovering the co-evolutionary network among prokaryotic genes.
Ofir Cohen, Haim Ashkenazy, David Burstein, Tal Pupko.
Bioinformatics, 2012 Sep 11; 28(18). PMID: 22962457    Free PMC article.
Graphlet-based edge clustering reveals pathogen-interacting proteins.
R W Solava, R P Michaels, T Milenkovic.
Bioinformatics, 2012 Sep 11; 28(18). PMID: 22962470    Free PMC article.
Bipartite graphs as models of population structures in evolutionary multiplayer games.
Jorge Peña, Yannick Rochat.
PLoS One, 2012 Sep 13; 7(9). PMID: 22970237    Free PMC article.
The fuzzy brain. Vagueness and mapping connectivity of the human cerebral cortex.
Philipp Haueis.
Front Neuroanat, 2012 Sep 14; 6. PMID: 22973199    Free PMC article.
Pro-cognitive drug effects modulate functional brain network organization.
Carsten Giessing, Christiane M Thiel.
Front Behav Neurosci, 2012 Sep 14; 6. PMID: 22973209    Free PMC article.
Application of circular consensus sequencing and network analysis to characterize the bovine IgG repertoire.
Peter A Larsen, Timothy P L Smith.
BMC Immunol, 2012 Sep 18; 13. PMID: 22978666    Free PMC article.
Cycle-by-cycle assembly of respiratory network activity is dynamic and stochastic.
Michael S Carroll, Jan-Marino Ramirez.
J Neurophysiol, 2012 Sep 21; 109(2). PMID: 22993257    Free PMC article.
Phylodynamic analysis of a viral infection network.
Teiichiro Shiino.
Front Microbiol, 2012 Sep 21; 3. PMID: 22993510    Free PMC article.
Stability of climate networks with time.
Y Berezin, A Gozolchiani, O Guez, S Havlin.
Sci Rep, 2012 Sep 21; 2. PMID: 22993691    Free PMC article.
A weighted and directed interareal connectivity matrix for macaque cerebral cortex.
N T Markov, M M Ercsey-Ravasz, +19 authors, H Kennedy.
Cereb Cortex, 2012 Sep 27; 24(1). PMID: 23010748    Free PMC article.
Highly Cited.
Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus.
Christian Bodenstein, Marko Gosak, +2 authors, Matjaž Perc.
PLoS Comput Biol, 2012 Oct 03; 8(9). PMID: 23028293    Free PMC article.
Growth dynamics explain the development of spatiotemporal burst activity of young cultured neuronal networks in detail.
Taras A Gritsun, Joost le Feber, Wim L C Rutten.
PLoS One, 2012 Oct 03; 7(9). PMID: 23028450    Free PMC article.
Structural design principles of complex bird songs: a network-based approach.
Kazutoshi Sasahara, Martin L Cody, David Cohen, Charles E Taylor.
PLoS One, 2012 Oct 03; 7(9). PMID: 23028539    Free PMC article.
Control centrality and hierarchical structure in complex networks.
Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási.
PLoS One, 2012 Oct 03; 7(9). PMID: 23028542    Free PMC article.
Topological and functional properties of the small GTPases protein interaction network.
Anna Delprato.
PLoS One, 2012 Oct 03; 7(9). PMID: 23028658    Free PMC article.
Revealing topological organization of human brain functional networks with resting-state functional near infrared spectroscopy.
Haijing Niu, Jinhui Wang, +2 authors, Yong He.
PLoS One, 2012 Oct 03; 7(9). PMID: 23029235    Free PMC article.
Rich club organization of macaque cerebral cortex and its role in network communication.
Logan Harriger, Martijn P van den Heuvel, Olaf Sporns.
PLoS One, 2012 Oct 03; 7(9). PMID: 23029538    Free PMC article.
Highly Cited.
Taxonomies of networks from community structure.
Jukka-Pekka Onnela, Daniel J Fenn, +4 authors, Nick S Jones.
Phys Rev E Stat Nonlin Soft Matter Phys, 2012 Oct 04; 86(3 Pt 2). PMID: 23030977    Free PMC article.
Reverse engineering and analysis of large genome-scale gene networks.
Maneesha Aluru, Jaroslaw Zola, Dan Nettleton, Srinivas Aluru.
Nucleic Acids Res, 2012 Oct 09; 41(1). PMID: 23042249    Free PMC article.
Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.
Chen Chen, Jun-Fei Zhao, +2 authors, Xiang-Sun Zhang.
BMC Syst Biol, 2012 Oct 12; 6 Suppl 1. PMID: 23046795    Free PMC article.
Cluster-based assessment of protein-protein interaction confidence.
Atanas Kamburov, Arndt Grossmann, Ralf Herwig, Ulrich Stelzl.
BMC Bioinformatics, 2012 Oct 12; 13. PMID: 23050565    Free PMC article.
The scale-free network behavior of ambient volatile organic compounds.
Chen-Wei Liang, Chien-Kuo Ku, Jeng-Jong Liang.
Environ Sci Pollut Res Int, 2012 Oct 12; 20(2). PMID: 23054767
Dynamics of regulatory networks in the developing mouse retina.
Woochang Hwang, Laszlo Hackler, +3 authors, Jiang Qian.
PLoS One, 2012 Oct 12; 7(10). PMID: 23056331    Free PMC article.
Analyzing self-similar and fractal properties of the C. elegans neural network.
Tyler M Reese, Antoni Brzoska, Dylan T Yott, Daniel J Kelleher.
PLoS One, 2012 Oct 17; 7(10). PMID: 23071485    Free PMC article.
Anatomical connectivity and the resting state activity of large cortical networks.
D A Pinotsis, E Hansen, K J Friston, V K Jirsa.
Neuroimage, 2012 Oct 23; 65. PMID: 23085498    Free PMC article.
Communication and wiring in the cortical connectome.
Julian M L Budd, Zoltán F Kisvárday.
Front Neuroanat, 2012 Oct 23; 6. PMID: 23087619    Free PMC article.
Brain connectivity analysis: a short survey.
E W Lang, A M Tomé, +2 authors, C G Puntonet.
Comput Intell Neurosci, 2012 Oct 26; 2012. PMID: 23097663    Free PMC article.
Review.
The structural, connectomic and network covariance of the human brain.
Andrei Irimia, John D Van Horn.
Neuroimage, 2012 Nov 03; 66. PMID: 23116816    Free PMC article.
Global civil unrest: contagion, self-organization, and prediction.
Dan Braha.
PLoS One, 2012 Nov 03; 7(10). PMID: 23119067    Free PMC article.
Impaired inter-hemispheric integration in bipolar disorder revealed with brain network analyses.
Alex Leow, Olusola Ajilore, +9 authors, Lori Altshuler.
Biol Psychiatry, 2012 Nov 06; 73(2). PMID: 23122540    Free PMC article.
The nature of "internal sensations" of higher brain functions may be derived from the design rules for artificial machines that can produce them.
Kunjumon I Vadakkan.
J Biol Eng, 2012 Nov 07; 6(1). PMID: 23126434    Free PMC article.
Identifying gene networks underlying the neurobiology of ethanol and alcoholism.
Aaron R Wolen, Michael F Miles.
Alcohol Res, 2012 Nov 09; 34(3). PMID: 23134046    Free PMC article.
Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation.
Anupam Saxena, Hod Lipson, Francisco J Valero-Cuevas.
PLoS Comput Biol, 2012 Nov 13; 8(11). PMID: 23144601    Free PMC article.
Altered topological organization of white matter structural networks in patients with neuromyelitis optica.
Yaou Liu, Yunyun Duan, +8 authors, Ni Shu.
PLoS One, 2012 Nov 13; 7(11). PMID: 23144994    Free PMC article.
Generalized reproduction numbers and the prediction of patterns in waterborne disease.
Marino Gatto, Lorenzo Mari, +4 authors, Andrea Rinaldo.
Proc Natl Acad Sci U S A, 2012 Nov 15; 109(48). PMID: 23150538    Free PMC article.
Implementation of web-based respondent-driven sampling among men who have sex with men in Vietnam.
Linus Bengtsson, Xin Lu, +5 authors, Anna Thorson.
PLoS One, 2012 Nov 16; 7(11). PMID: 23152902    Free PMC article.
Temporal aggregation impacts on epidemiological simulations employing microcontact data.
Mohammad Hashemian, Weicheng Qian, Kevin G Stanley, Nathaniel D Osgood.
BMC Med Inform Decis Mak, 2012 Nov 17; 12. PMID: 23153380    Free PMC article.
A network with tunable clustering, degree correlation and degree distribution, and an epidemic thereon.
Frank Ball, Tom Britton, David Sirl.
J Math Biol, 2012 Nov 20; 66(4-5). PMID: 23161473
An approach for the identification of targets specific to bone metastasis using cancer genes interactome and gene ontology analysis.
Shikha Vashisht, Ganesh Bagler.
PLoS One, 2012 Nov 21; 7(11). PMID: 23166660    Free PMC article.
MEG network differences between low- and high-grade glioma related to epilepsy and cognition.
Edwin van Dellen, Linda Douw, +9 authors, Jaap C Reijneveld.
PLoS One, 2012 Nov 21; 7(11). PMID: 23166829    Free PMC article.
Technical advances in the characterization of the complexity of sleep and sleep disorders.
Matt T Bianchi, Robert J Thomas.
Prog Neuropsychopharmacol Biol Psychiatry, 2012 Nov 24; 45. PMID: 23174482    Free PMC article.
Review.
Social and spatial processes associated with childhood diarrheal disease in Matlab, Bangladesh.
Carolina Perez-Heydrich, Jill M Furgurson, +4 authors, Michael Emch.
Health Place, 2012 Nov 28; 19. PMID: 23178328    Free PMC article.
Hubs of brain functional networks are radically reorganized in comatose patients.
Sophie Achard, Chantal Delon-Martin, +6 authors, Edward T Bullmore.
Proc Natl Acad Sci U S A, 2012 Nov 28; 109(50). PMID: 23185007    Free PMC article.
Highly Cited.
Epidemic spreading on preferred degree adaptive networks.
Shivakumar Jolad, Wenjia Liu, B Schmittmann, R K P Zia.
PLoS One, 2012 Nov 29; 7(11). PMID: 23189133    Free PMC article.
The problem of colliding networks and its relation to cell fusion and cancer.
Alexei A Koulakov, Yuri Lazebnik.
Biophys J, 2012 Dec 04; 103(9). PMID: 23199929    Free PMC article.
Magnetic resonance field strength effects on diffusion measures and brain connectivity networks.
Liang Zhan, Bryon A Mueller, +9 authors, Paul M Thompson.
Brain Connect, 2012 Dec 05; 3(1). PMID: 23205551    Free PMC article.
Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e.
Elisa Cilia, Geerten W Vuister, Tom Lenaerts.
PLoS Comput Biol, 2012 Dec 05; 8(11). PMID: 23209399    Free PMC article.
Epidemics scenarios in the "Romantic network".
Alexsandro M Carvalho, Sebastián Gonçalves.
PLoS One, 2012 Dec 05; 7(11). PMID: 23209561    Free PMC article.
The science in social science.
H Russell Bernard.
Proc Natl Acad Sci U S A, 2012 Dec 06; 109(51). PMID: 23213222    Free PMC article.
Modeling rapidly disseminating infectious disease during mass gatherings.
Gerardo Chowell, Hiroshi Nishiura, Cécile Viboud.
BMC Med, 2012 Dec 12; 10. PMID: 23217051    Free PMC article.
Review.
Intra- and interbrain synchronization and network properties when playing guitar in duets.
Johanna Sänger, Viktor Müller, Ulman Lindenberger.
Front Hum Neurosci, 2012 Dec 12; 6. PMID: 23226120    Free PMC article.
Hierarchical alteration of brain structural and functional networks in female migraine sufferers.
Jixin Liu, Ling Zhao, +8 authors, Jie Tian.
PLoS One, 2012 Dec 12; 7(12). PMID: 23227257    Free PMC article.
Global functional connectivity abnormalities in children with fetal alcohol spectrum disorders.
Jeffrey R Wozniak, Bryon A Mueller, +4 authors, Kelvin O Lim.
Alcohol Clin Exp Res, 2012 Dec 18; 37(5). PMID: 23240997    Free PMC article.
Empirical analysis and modeling of users' topic interests in online forums.
Fei Xiong, Yun Liu.
PLoS One, 2012 Dec 20; 7(12). PMID: 23251401    Free PMC article.
Climate and landscape factors associated with Buruli ulcer incidence in Victoria, Australia.
Jenni van Ravensway, M Eric Benbow, +7 authors, Jiaguo Qi.
PLoS One, 2012 Dec 20; 7(12). PMID: 23251425    Free PMC article.
Clusters of poverty and disease emerge from feedbacks on an epidemiological network.
Mateusz M Pluciński, Calistus N Ngonghala, Wayne M Getz, Matthew H Bonds.
J R Soc Interface, 2012 Dec 21; 10(80). PMID: 23256187    Free PMC article.
Network, anatomical, and non-imaging measures for the prediction of ADHD diagnosis in individual subjects.
Jason W Bohland, Sara Saperstein, +2 authors, Leo Grady.
Front Syst Neurosci, 2012 Dec 26; 6. PMID: 23267318    Free PMC article.
Properties of functional brain networks correlate with frequency of psychogenic non-epileptic seizures.
Elham Barzegaran, Amir Joudaki, +3 authors, Maria G Knyazeva.
Front Hum Neurosci, 2012 Dec 26; 6. PMID: 23267325    Free PMC article.
Emergence of scale-free close-knit friendship structure in online social networks.
Ai-Xiang Cui, Zi-Ke Zhang, +2 authors, Yan Fu.
PLoS One, 2012 Dec 29; 7(12). PMID: 23272067    Free PMC article.
Discriminating different classes of biological networks by analyzing the graphs spectra distribution.
Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita.
PLoS One, 2013 Jan 04; 7(12). PMID: 23284629    Free PMC article.
The network structure of human personality according to the NEO-PI-R: matching network community structure to factor structure.
Rutger Goekoop, Jaap G Goekoop, H Steven Scholte.
PLoS One, 2013 Jan 04; 7(12). PMID: 23284713    Free PMC article.
Labeling nodes using three degrees of propagation.
Sara Mostafavi, Anna Goldenberg, Quaid Morris.
PLoS One, 2013 Jan 04; 7(12). PMID: 23284828    Free PMC article.
Calcium wave propagation in networks of endothelial cells: model-based theoretical and experimental study.
Juexuan Long, Michael Junkin, +2 authors, Pierre Deymier.
PLoS Comput Biol, 2013 Jan 10; 8(12). PMID: 23300426    Free PMC article.
Identification of a functional connectome for long-term fear memory in mice.
Anne L Wheeler, Cátia M Teixeira, +6 authors, Paul W Frankland.
PLoS Comput Biol, 2013 Jan 10; 9(1). PMID: 23300432    Free PMC article.
The problem of thresholding in small-world network analysis.
Nicolas Langer, Andreas Pedroni, Lutz Jäncke.
PLoS One, 2013 Jan 10; 8(1). PMID: 23301043    Free PMC article.
Resting-state functional connectivity in late-life depression: higher global connectivity and more long distance connections.
Iwo Jerzy Bohr, Eva Kenny, +4 authors, Marcus Kaiser.
Front Psychiatry, 2013 Jan 15; 3. PMID: 23316175    Free PMC article.
Abnormal brain network organization in body dysmorphic disorder.
Donatello Arienzo, Alex Leow, +4 authors, Jamie D Feusner.
Neuropsychopharmacology, 2013 Jan 17; 38(6). PMID: 23322186    Free PMC article.
Effect of correlations on network controllability.
Márton Pósfai, Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási.
Sci Rep, 2013 Jan 17; 3. PMID: 23323210    Free PMC article.
Disentangling function from topology to infer the network properties of disease genes.
Dario Ghersi, Mona Singh.
BMC Syst Biol, 2013 Jan 18; 7. PMID: 23324116    Free PMC article.
Topological properties of large-scale structural brain networks in children with familial risk for reading difficulties.
S M Hadi Hosseini, Jessica M Black, +5 authors, Fumiko Hoeft.
Neuroimage, 2013 Jan 22; 71. PMID: 23333415    Free PMC article.
Molecular architecture of the chick vestibular hair bundle.
Jung-Bum Shin, Jocelyn F Krey, +12 authors, Peter G Barr-Gillespie.
Nat Neurosci, 2013 Jan 22; 16(3). PMID: 23334578    Free PMC article.
Highly Cited.
Whole-brain functional networks in cognitively normal, mild cognitive impairment, and Alzheimer's disease.
Eun Hyun Seo, Dong Young Lee, +5 authors, Jong Inn Woo.
PLoS One, 2013 Jan 22; 8(1). PMID: 23335980    Free PMC article.
A systems biology starter kit for arenaviruses.
Magali E Droniou-Bonzom, Paula M Cannon.
Viruses, 2013 Jan 25; 4(12). PMID: 23342371    Free PMC article.
Review.
The predictive power of r(0) in an epidemic probabilistic system.
D Alves, V J Haas, A Caliri.
J Biol Phys, 2003 Mar 01; 29(1). PMID: 23345820    Free PMC article.
Disruption of the cerebral white matter network is related to slowing of information processing speed in patients with type 2 diabetes.
Yael D Reijmer, Alexander Leemans, +3 authors, Utrecht Vascular Cognitive Impairment Study Group.
Diabetes, 2013 Jan 26; 62(6). PMID: 23349494    Free PMC article.
Robust short-term memory without synaptic learning.
Samuel Johnson, J Marro, Joaquín J Torres.
PLoS One, 2013 Jan 26; 8(1). PMID: 23349664    Free PMC article.
Altered network communication following a neuroprotective drug treatment.
Kathleen Vincent, Joseph S Tauskela, Geoffrey A Mealing, Jean-Philippe Thivierge.
PLoS One, 2013 Jan 26; 8(1). PMID: 23349901    Free PMC article.
A modified amino acid network model contains similar and dissimilar weight.
Xiong Jiao, Lifeng Yang, Meiwen An, Weiyi Chen.
Comput Math Methods Med, 2013 Feb 01; 2013. PMID: 23365624    Free PMC article.
Population rate coding in recurrent neuronal networks with unreliable synapses.
Daqing Guo, Chunguang Li.
Cogn Neurodyn, 2013 Feb 02; 6(1). PMID: 23372621    Free PMC article.
Global spatio-temporal patterns in human migration: a complex network perspective.
Kyle F Davis, Paolo D'Odorico, Francesco Laio, Luca Ridolfi.
PLoS One, 2013 Feb 02; 8(1). PMID: 23372664    Free PMC article.
Fashion, cooperation, and social interactions.
Zhigang Cao, Haoyu Gao, +2 authors, Xiaoguang Yang.
PLoS One, 2013 Feb 06; 8(1). PMID: 23382799    Free PMC article.
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.
Peter Csermely, Tamás Korcsmáros, +2 authors, Ruth Nussinov.
Pharmacol Ther, 2013 Feb 07; 138(3). PMID: 23384594    Free PMC article.
Highly Cited. Review.
Effective use of latent semantic indexing and computational linguistics in biological and biomedical applications.
Hongyu Chen, Bronwen Martin, Caitlin M Daimon, Stuart Maudsley.
Front Physiol, 2013 Feb 07; 4. PMID: 23386833    Free PMC article.
Cascading failures in bi-partite graphs: model for systemic risk propagation.
Xuqing Huang, Irena Vodenska, Shlomo Havlin, H Eugene Stanley.
Sci Rep, 2013 Feb 07; 3. PMID: 23386974    Free PMC article.
Renormalization and small-world model of fractal quantum repeater networks.
Zong-Wen Wei, Bing-Hong Wang, Xiao-Pu Han.
Sci Rep, 2013 Feb 07; 3. PMID: 23386977    Free PMC article.
Impact of network topology on inference of synaptic connectivity from multi-neuronal spike data simulated by a large-scale cortical network model.
Ryota Kobayashi, Katsunori Kitano.
J Comput Neurosci, 2013 Feb 08; 35(1). PMID: 23388860
Topological organization of functional brain networks in healthy children: differences in relation to age, sex, and intelligence.
Kai Wu, Yasuyuki Taki, +9 authors, Hiroshi Fukuda.
PLoS One, 2013 Feb 08; 8(2). PMID: 23390528    Free PMC article.
Coordination on networks: does topology matter?
Alberto Antonioni, Maria Paula Cacault, Rafael Lalive, Marco Tomassini.
PLoS One, 2013 Feb 14; 8(2). PMID: 23405109    Free PMC article.
Spreading dynamics on spatially constrained complex brain networks.
Reuben O'Dea, Jonathan J Crofts, Marcus Kaiser.
J R Soc Interface, 2013 Feb 15; 10(81). PMID: 23407574    Free PMC article.
Modeling social network topologies in elementary schools.
Rodrigo Huerta-Quintanilla, Efrain Canto-Lugo, Dolores Viga-de Alva.
PLoS One, 2013 Feb 15; 8(2). PMID: 23408976    Free PMC article.
Potential theory for directed networks.
Qian-Ming Zhang, Linyuan Lü, +3 authors, Tao Zhou.
PLoS One, 2013 Feb 15; 8(2). PMID: 23408979    Free PMC article.
Computing the size and number of neuronal clusters in local circuits.
Rodrigo Perin, Martin Telefont, Henry Markram.
Front Neuroanat, 2013 Feb 21; 7. PMID: 23423949    Free PMC article.
Structural properties and complexity of a new network class: Collatz step graphs.
Frank Emmert-Streib.
PLoS One, 2013 Feb 23; 8(2). PMID: 23431377    Free PMC article.
Emergence of network features from multiplexity.
Alessio Cardillo, Jesús Gómez-Gardeñes, +4 authors, Stefano Boccaletti.
Sci Rep, 2013 Mar 01; 3. PMID: 23446838    Free PMC article.
The thalamus and brainstem act as key hubs in alterations of human brain network connectivity induced by mild propofol sedation.
Tommaso Gili, Neeraj Saxena, +3 authors, Richard G Wise.
J Neurosci, 2013 Mar 01; 33(9). PMID: 23447611    Free PMC article.
Studying the evolutionary relationships and phylogenetic trees of 21 groups of tRNA sequences based on complex networks.
Fangping Wei, Bowen Chen.
J Biol Phys, 2013 Mar 02; 38(2). PMID: 23450215    Free PMC article.
Functional and structural neural network characterization of serotonin transporter knockout rats.
Kajo van der Marel, Judith R Homberg, Willem M Otte, Rick M Dijkhuizen.
PLoS One, 2013 Mar 02; 8(2). PMID: 23451267    Free PMC article.
Functional connectivity in islets of Langerhans from mouse pancreas tissue slices.
Andraž Stožer, Marko Gosak, +4 authors, Dean Korošak.
PLoS Comput Biol, 2013 Mar 08; 9(2). PMID: 23468610    Free PMC article.
Modulation of EEG functional connectivity networks in subjects undergoing repetitive transcranial magnetic stimulation.
Mouhsin M Shafi, M Brandon Westover, +2 authors, Alvaro Pascual-Leone.
Brain Topogr, 2013 Mar 09; 27(1). PMID: 23471637    Free PMC article.
Cluster and propensity based approximation of a network.
John Michael Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath.
BMC Syst Biol, 2013 Mar 19; 7. PMID: 23497424    Free PMC article.
Structural connectivity asymmetry in the neonatal brain.
Nagulan Ratnarajah, Anne Rifkin-Graboi, +7 authors, Anqi Qiu.
Neuroimage, 2013 Mar 19; 75. PMID: 23501049    Free PMC article.
Trade-off between multiple constraints enables simultaneous formation of modules and hubs in neural systems.
Yuhan Chen, Shengjun Wang, Claus C Hilgetag, Changsong Zhou.
PLoS Comput Biol, 2013 Mar 19; 9(3). PMID: 23505352    Free PMC article.
Exploring the morphospace of communication efficiency in complex networks.
Joaquín Goñi, Andrea Avena-Koenigsberger, +3 authors, Olaf Sporns.
PLoS One, 2013 Mar 19; 8(3). PMID: 23505455    Free PMC article.
Profiling core-periphery network structure by random walkers.
Fabio Della Rossa, Fabio Dercole, Carlo Piccardi.
Sci Rep, 2013 Mar 20; 3. PMID: 23507984    Free PMC article.
Relationship between large-scale functional and structural covariance networks in idiopathic generalized epilepsy.
Wei Liao, Zhiqiang Zhang, +6 authors, Guangming Lu.
Brain Connect, 2013 Mar 21; 3(3). PMID: 23510272    Free PMC article.
Nanotools for neuroscience and brain activity mapping.
A Paul Alivisatos, Anne M Andrews, +24 authors, Xiaowei Zhuang.
ACS Nano, 2013 Mar 22; 7(3). PMID: 23514423    Free PMC article.
Highly Cited. Review.
A dynamical role for acetylcholine in synaptic renormalization.
Christian G Fink, Geoffrey G Murphy, Michal Zochowski, Victoria Booth.
PLoS Comput Biol, 2013 Mar 22; 9(3). PMID: 23516342    Free PMC article.
Balance between noise and information flow maximizes set complexity of network dynamics.
Tuomo Mäki-Marttunen, Juha Kesseli, Matti Nykter.
PLoS One, 2013 Mar 22; 8(3). PMID: 23516395    Free PMC article.
Development of cortical anatomical properties from early childhood to early adulthood.
Jingxin Nie, Gang Li, Dinggang Shen.
Neuroimage, 2013 Mar 26; 76. PMID: 23523806    Free PMC article.
The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks.
Yuliang Jin, Dmitrij Turaev, +2 authors, Hernán A Makse.
PLoS One, 2013 Mar 26; 8(3). PMID: 23526967    Free PMC article.
Imaging structural co-variance between human brain regions.
Aaron Alexander-Bloch, Jay N Giedd, Ed Bullmore.
Nat Rev Neurosci, 2013 Mar 28; 14(5). PMID: 23531697    Free PMC article.
Highly Cited. Review.
Epileptic neuronal networks: methods of identification and clinical relevance.
Hermann Stefan, Fernando H Lopes da Silva.
Front Neurol, 2013 Mar 28; 4. PMID: 23532203    Free PMC article.
Single-subject grey matter graphs in Alzheimer's disease.
Betty M Tijms, Christiane Möller, +6 authors, Frederik Barkhof.
PLoS One, 2013 Mar 29; 8(3). PMID: 23536835    Free PMC article.
A decade and a half of protein intrinsic disorder: biology still waits for physics.
Vladimir N Uversky.
Protein Sci, 2013 Apr 05; 22(6). PMID: 23553817    Free PMC article.
Highly Cited. Review.
Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19.
Marco Di Stefano, Angelo Rosa, +2 authors, Cristian Micheletti.
PLoS Comput Biol, 2013 Apr 05; 9(3). PMID: 23555238    Free PMC article.
A new method for the discovery of essential proteins.
Xue Zhang, Jin Xu, Wang-xin Xiao.
PLoS One, 2013 Apr 05; 8(3). PMID: 23555595    Free PMC article.
t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.
Lin Zhu, Zhu-Hong You, De-Shuang Huang, Bing Wang.
PLoS One, 2013 Apr 06; 8(4). PMID: 23560036    Free PMC article.
From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.
Carlo Vittorio Cannistraci, Gregorio Alanis-Lobato, Timothy Ravasi.
Sci Rep, 2013 Apr 09; 3. PMID: 23563395    Free PMC article.
Seasonal changes in the structure of rhesus macaque social networks.
Lauren J N Brent, Ann Maclarnon, Michael L Platt, Stuart Semple.
Behav Ecol Sociobiol, 2013 Apr 09; 67(3). PMID: 23565026    Free PMC article.
Attack robustness and centrality of complex networks.
Swami Iyer, Timothy Killingback, Bala Sundaram, Zhen Wang.
PLoS One, 2013 Apr 09; 8(4). PMID: 23565156    Free PMC article.
The rich club of the C. elegans neuronal connectome.
Emma K Towlson, Petra E Vértes, +2 authors, Edward T Bullmore.
J Neurosci, 2013 Apr 12; 33(15). PMID: 23575836    Free PMC article.
Highly Cited.
Neural progenitors organize in small-world networks to promote cell proliferation.
Seth Malmersjö, Paola Rebellato, +12 authors, Per Uhlén.
Proc Natl Acad Sci U S A, 2013 Apr 12; 110(16). PMID: 23576737    Free PMC article.
Different scaling of white matter volume, cortical connectivity, and gyrification across rodent and primate brains.
Lissa Ventura-Antunes, Bruno Mota, Suzana Herculano-Houzel.
Front Neuroanat, 2013 Apr 12; 7. PMID: 23576961    Free PMC article.
Using GPS technology to quantify human mobility, dynamic contacts and infectious disease dynamics in a resource-poor urban environment.
Gonzalo M Vazquez-Prokopec, Donal Bisanzio, +8 authors, Uriel Kitron.
PLoS One, 2013 Apr 12; 8(4). PMID: 23577059    Free PMC article.
Features of the correlation structure of price indices.
Xiangyun Gao, Haizhong An, Weiqiong Zhong.
PLoS One, 2013 Apr 18; 8(4). PMID: 23593399    Free PMC article.
Anomalous gray matter structural networks in major depressive disorder.
Manpreet K Singh, Shelli R Kesler, +5 authors, Ian H Gotlib.
Biol Psychiatry, 2013 Apr 23; 74(10). PMID: 23601854    Free PMC article.
Comparing connectivity pattern and small-world organization between structural correlation and resting-state networks in healthy adults.
S M Hadi Hosseini, Shelli R Kesler.
Neuroimage, 2013 Apr 23; 78. PMID: 23603348    Free PMC article.
Phase transition in the economically modeled growth of a cellular nervous system.
Vincenzo Nicosia, Petra E Vértes, +2 authors, Edward T Bullmore.
Proc Natl Acad Sci U S A, 2013 Apr 24; 110(19). PMID: 23610428    Free PMC article.
Topological dynamics in spike-timing dependent plastic model neural networks.
David B Stone, Claudia D Tesche.
Front Neural Circuits, 2013 Apr 26; 7. PMID: 23616750    Free PMC article.
Leveraging social networks for toxicovigilance.
Michael Chary, Nicholas Genes, Andrew McKenzie, Alex F Manini.
J Med Toxicol, 2013 Apr 27; 9(2). PMID: 23619711    Free PMC article.
Network characteristic analysis of ADR-related proteins and identification of ADR-ADR associations.
Xiujie Chen, Xiangqiong Liu, +6 authors, Yuelong Chen.
Sci Rep, 2013 Apr 30; 3. PMID: 23625301    Free PMC article.
Network redundancy analysis of effective brain networks: a comparison of healthy controls and patients with major depression.
Lutz Leistritz, Thomas Weiss, +4 authors, Thomas Lehmann.
PLoS One, 2013 May 03; 8(4). PMID: 23637778    Free PMC article.
Bimanual motor coordination in older adults is associated with increased functional brain connectivity--a graph-theoretical analysis.
Marcus H Heitger, Daniel J Goble, +5 authors, Stephan P Swinnen.
PLoS One, 2013 May 03; 8(4). PMID: 23637982    Free PMC article.
Suicide ideation of individuals in online social networks.
Naoki Masuda, Issei Kurahashi, Hiroko Onari.
PLoS One, 2013 May 03; 8(4). PMID: 23638019    Free PMC article.
TNA4OptFlux--a software tool for the analysis of strain optimization strategies.
José P Pinto, Rui Pereira, +2 authors, Miguel Rocha.
BMC Res Notes, 2013 May 07; 6. PMID: 23641878    Free PMC article.
How activation, entanglement, and searching a semantic network contribute to event memory.
Douglas L Nelson, Kirsty Kitto, +2 authors, Peter D Bruza.
Mem Cognit, 2013 May 07; 41(6). PMID: 23645391
Origins of power-law degree distribution in the heterogeneity of human activity in social networks.
Lev Muchnik, Sen Pei, +4 authors, Hernán A Makse.
Sci Rep, 2013 May 08; 3. PMID: 23648793    Free PMC article.
Short and long-term genome stability analysis of prokaryotic genomes.
Matteo Brilli, Pietro Liò, Vincent Lacroix, Marie-France Sagot.
BMC Genomics, 2013 May 09; 14. PMID: 23651581    Free PMC article.
Inferring group-wise consistent multimodal brain networks via multi-view spectral clustering.
Hanbo Chen, Kaiming Li, +7 authors, Tianming Liu.
IEEE Trans Med Imaging, 2013 May 11; 32(9). PMID: 23661312    Free PMC article.
Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information.
Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert-Streib.
BMC Genomics, 2013 May 15; 14. PMID: 23663484    Free PMC article.
Combining classification with fMRI-derived complex network measures for potential neurodiagnostics.
Tomer Fekete, Meytal Wilf, +3 authors, Lilianne R Mujica-Parodi.
PLoS One, 2013 May 15; 8(5). PMID: 23671641    Free PMC article.
Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis.
Emily Greenfest-Allen, Jeffrey Malik, James Palis, Christian J Stoeckert.
BMC Syst Biol, 2013 May 17; 7. PMID: 23675896    Free PMC article.
Protein complex detection using interaction reliability assessment and weighted clustering coefficient.
Nazar Zaki, Dmitry Efimov, Jose Berengueres.
BMC Bioinformatics, 2013 May 22; 14. PMID: 23688127    Free PMC article.
Interface-resolved network of protein-protein interactions.
Margaret E Johnson, Gerhard Hummer.
PLoS Comput Biol, 2013 May 23; 9(5). PMID: 23696724    Free PMC article.
Evolutionary pressure on the topology of protein interface interaction networks.
Margaret E Johnson, Gerhard Hummer.
J Phys Chem B, 2013 May 25; 117(42). PMID: 23701316    Free PMC article.
Robust timing and motor patterns by taming chaos in recurrent neural networks.
Rodrigo Laje, Dean V Buonomano.
Nat Neurosci, 2013 May 28; 16(7). PMID: 23708144    Free PMC article.
Highly Cited.
Complex social contagion makes networks more vulnerable to disease outbreaks.
Ellsworth Campbell, Marcel Salathé.
Sci Rep, 2013 May 29; 3. PMID: 23712758    Free PMC article.
An exploration of graph metric reproducibility in complex brain networks.
Qawi K Telesford, Jonathan H Burdette, Paul J Laurienti.
Front Neurosci, 2013 May 30; 7. PMID: 23717257    Free PMC article.
A lattice model for influenza spreading.
Antonella Liccardo, Annalisa Fierro.
PLoS One, 2013 May 30; 8(5). PMID: 23717512    Free PMC article.
Graph network analysis of immediate motor-learning induced changes in resting state BOLD.
S Sami, R C Miall.
Front Hum Neurosci, 2013 May 31; 7. PMID: 23720616    Free PMC article.
The impact of individual biases on consensus formation.
Marta Sales-Pardo, Daniel Diermeier, Luís A Nunes Amaral.
PLoS One, 2013 Jun 01; 8(5). PMID: 23723964    Free PMC article.
Brain connectivity plasticity in the motor network after ischemic stroke.
Lin Jiang, Huijuan Xu, Chunshui Yu.
Neural Plast, 2013 Jun 06; 2013. PMID: 23738150    Free PMC article.
Review.
Characterizing protein domain associations by Small-molecule ligand binding.
Qingliang Li, Tiejun Cheng, Yanli Wang, Stephen H Bryant.
J Proteome Sci Comput Biol, 2013 Jun 08; 1. PMID: 23745168    Free PMC article.
The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow.
Pablo Blinder, Philbert S Tsai, +3 authors, David Kleinfeld.
Nat Neurosci, 2013 Jun 12; 16(7). PMID: 23749145    Free PMC article.
Highly Cited.
Network2Canvas: network visualization on a canvas with enrichment analysis.
Christopher M Tan, Edward Y Chen, +2 authors, Avi Ma'ayan.
Bioinformatics, 2013 Jun 12; 29(15). PMID: 23749960    Free PMC article.
Specific and evolving resting-state network alterations in post-concussion syndrome following mild traumatic brain injury.
Arnaud Messé, Sophie Caplain, +6 authors, Stéphane Lehéricy.
PLoS One, 2013 Jun 12; 8(6). PMID: 23755237    Free PMC article.
Directionality in hyperbrain networks discriminates between leaders and followers in guitar duets.
Johanna Sänger, Viktor Müller, Ulman Lindenberger.
Front Hum Neurosci, 2013 Jun 14; 7. PMID: 23761745    Free PMC article.
The relevance of network micro-structure for neural dynamics.
Volker Pernice, Moritz Deger, Stefano Cardanobile, Stefan Rotter.
Front Comput Neurosci, 2013 Jun 14; 7. PMID: 23761758    Free PMC article.
Revealing the hidden relationship by sparse modules in complex networks with a large-scale analysis.
Qing-Ju Jiao, Yan Huang, +3 authors, Hong-Bin Shen.
PLoS One, 2013 Jun 14; 8(6). PMID: 23762457    Free PMC article.
Nonparametric survival analysis of infectious disease data.
Eben Kenah.
J R Stat Soc Series B Stat Methodol, 2013 Jun 19; 75(2). PMID: 23772180    Free PMC article.
Extraversion and neuroticism relate to topological properties of resting-state brain networks.
Qing Gao, Qiang Xu, +6 authors, Huafu Chen.
Front Hum Neurosci, 2013 Jun 20; 7. PMID: 23781183    Free PMC article.
Neuronal functional connection graphs among multiple areas of the rat somatosensory system during spontaneous and evoked activities.
Antonio G Zippo, Riccardo Storchi, +3 authors, Gabriele Eliseo M Biella.
PLoS Comput Biol, 2013 Jun 21; 9(6). PMID: 23785273    Free PMC article.
Disrupted cortical network as a vulnerability marker for obsessive-compulsive disorder.
Ziwen Peng, Feng Shi, +3 authors, Dinggang Shen.
Brain Struct Funct, 2013 Jun 26; 219(5). PMID: 23797209    Free PMC article.
Cognitive relevance of the community structure of the human brain functional coactivation network.
Nicolas A Crossley, Andrea Mechelli, +5 authors, Edward T Bullmore.
Proc Natl Acad Sci U S A, 2013 Jun 27; 110(28). PMID: 23798414    Free PMC article.
Highly Cited.
Social encounter networks: characterizing Great Britain.
Leon Danon, Jonathan M Read, +2 authors, Matt J Keeling.
Proc Biol Sci, 2013 Jun 28; 280(1765). PMID: 23804621    Free PMC article.
Topological Strata of Weighted Complex Networks.
Giovanni Petri, Martina Scolamiero, Irene Donato, Francesco Vaccarino.
PLoS One, 2013 Jun 28; 8(6). PMID: 23805226    Free PMC article.
Organization of brain networks governed by long-range connections index autistic traits in the general population.
Pablo Barttfeld, Lucía Amoruso, +6 authors, Mariano Sigman.
J Neurodev Disord, 2013 Jun 29; 5(1). PMID: 23806204    Free PMC article.
Genetic basis of neuronal individuality in the mammalian brain.
Takeshi Yagi.
J Neurogenet, 2013 Jul 03; 27(3). PMID: 23808929    Free PMC article.
Review.
Reproducibility of functional network metrics and network structure: a comparison of task-related BOLD, resting ASL with BOLD contrast, and resting cerebral blood flow.
Matthew J Weber, John A Detre, Sharon L Thompson-Schill, Brian B Avants.
Cogn Affect Behav Neurosci, 2013 Jul 03; 13(3). PMID: 23813017    Free PMC article.
Evolution of cooperation in a heterogeneous graph: fixation probabilities under weak selection.
Cong Li, Boyu Zhang, Ross Cressman, Yi Tao.
PLoS One, 2013 Jul 03; 8(6). PMID: 23818942    Free PMC article.
Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole.
Nadia M Penrod, Jason H Moore.
BMC Med Genomics, 2013 Jul 17; 6 Suppl 2. PMID: 23819860    Free PMC article.
Patterned Brain Stimulation, What a Framework with Rhythmic and Noisy Components Might Tell Us about Recovery Maximization.
Sein Schmidt, Michael Scholz, Klaus Obermayer, Stephan A Brandt.
Front Hum Neurosci, 2013 Jul 05; 7. PMID: 23825456    Free PMC article.
IMDB network revisited: unveiling fractal and modular properties from a typical small-world network.
Lazaros K Gallos, Fabricio Q Potiguar, José S Andrade, Hernan A Makse.
PLoS One, 2013 Jul 05; 8(6). PMID: 23826098    Free PMC article.
Graph theory analysis of cortical-subcortical networks in late-life depression.
Olusola Ajilore, Melissa Lamar, +3 authors, Anand Kumar.
Am J Geriatr Psychiatry, 2013 Jul 09; 22(2). PMID: 23831171    Free PMC article.
Disparity between dorsal and ventral networks in patients with obsessive-compulsive disorder: evidence revealed by graph theoretical analysis based on cortical thickness from MRI.
Seung-Goo Kim, Wi Hoon Jung, +2 authors, Jun Soo Kwon.
Front Hum Neurosci, 2013 Jul 11; 7. PMID: 23840184    Free PMC article.
Sculpting the Intrinsic Modular Organization of Spontaneous Brain Activity by Art.
Chia-Shu Lin, Yong Liu, +7 authors, Jen-Chuen Hsieh.
PLoS One, 2013 Jul 11; 8(6). PMID: 23840527    Free PMC article.
Influence of choice of null network on small-world parameters of structural correlation networks.
S M Hadi Hosseini, Shelli R Kesler.
PLoS One, 2013 Jul 11; 8(6). PMID: 23840672    Free PMC article.
Policy trap and optimal subsidization policy under limited supply of vaccines.
Ming Yi, Achla Marathe.
PLoS One, 2013 Jul 11; 8(7). PMID: 23840869    Free PMC article.
Global efficiency of local immunization on complex networks.
Laurent Hébert-Dufresne, Antoine Allard, Jean-Gabriel Young, Louis J Dubé.
Sci Rep, 2013 Jul 12; 3. PMID: 23842121    Free PMC article.
Large-scale network organization in the avian forebrain: a connectivity matrix and theoretical analysis.
Murray Shanahan, Verner P Bingman, +2 authors, Onur Güntürkün.
Front Comput Neurosci, 2013 Jul 13; 7. PMID: 23847525    Free PMC article.
Malaria transmission modelling: a network perspective.
Jiming Liu, Bo Yang, William K Cheung, Guojing Yang.
Infect Dis Poverty, 2012 Jan 01; 1(1). PMID: 23849949    Free PMC article.
Improved network community structure improves function prediction.
Juyong Lee, Steven P Gross, Jooyoung Lee.
Sci Rep, 2013 Jul 16; 3. PMID: 23852097    Free PMC article.
BrainNet Viewer: a network visualization tool for human brain connectomics.
Mingrui Xia, Jinhui Wang, Yong He.
PLoS One, 2013 Jul 19; 8(7). PMID: 23861951    Free PMC article.
Highly Cited.
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.
Cheryl-Emiliane T Chow, Rohan Sachdeva, +5 authors, Jed A Fuhrman.
ISME J, 2013 Jul 19; 7(12). PMID: 23864126    Free PMC article.
Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks.
Lindsay Rutter, Sreenivasan R Nadar, +4 authors, Richard Coppola.
Front Comput Neurosci, 2013 Jul 23; 7. PMID: 23874288    Free PMC article.
Glucose metabolism during resting state reveals abnormal brain networks organization in the Alzheimer's disease and mild cognitive impairment.
Gretel Sanabria-Diaz, Eduardo Martínez-Montes, Lester Melie-Garcia, Alzheimer’s Disease Neuroimaging Initiative.
PLoS One, 2013 Jul 31; 8(7). PMID: 23894356    Free PMC article.
Has large-scale named-entity network analysis been resting on a flawed assumption?
Brent D Fegley, Vetle I Torvik.
PLoS One, 2013 Jul 31; 8(7). PMID: 23894639    Free PMC article.
Network model of a protein globule.
E Z Meilikhov, R M Farzetdinova.
J Biol Phys, 2013 Jul 31; 39(4). PMID: 23897064    Free PMC article.
Energetic cost of brain functional connectivity.
Dardo Tomasi, Gene-Jack Wang, Nora D Volkow.
Proc Natl Acad Sci U S A, 2013 Jul 31; 110(33). PMID: 23898179    Free PMC article.
Highly Cited.
Threshold-limited spreading in social networks with multiple initiators.
P Singh, S Sreenivasan, B K Szymanski, G Korniss.
Sci Rep, 2013 Aug 01; 3. PMID: 23900230    Free PMC article.
The effects of alcohol on the nonhuman primate brain: a network science approach to neuroimaging.
Qawi K Telesford, Paul J Laurienti, +2 authors, James B Daunais.
Alcohol Clin Exp Res, 2013 Aug 03; 37(11). PMID: 23905720    Free PMC article.
Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network.
Suleyman Gulsuner, Tom Walsh, +15 authors, Jon M McClellan.
Cell, 2013 Aug 06; 154(3). PMID: 23911319    Free PMC article.
Highly Cited.
Control capacity and a random sampling method in exploring controllability of complex networks.
Tao Jia, Albert-László Barabási.
Sci Rep, 2013 Aug 06; 3. PMID: 23912679    Free PMC article.
Understanding metropolitan patterns of daily encounters.
Lijun Sun, Kay W Axhausen, Der-Horng Lee, Xianfeng Huang.
Proc Natl Acad Sci U S A, 2013 Aug 07; 110(34). PMID: 23918373    Free PMC article.
Altered resting state brain dynamics in temporal lobe epilepsy can be observed in spectral power, functional connectivity and graph theory metrics.
Maher A Quraan, Cornelia McCormick, +2 authors, Mary Pat McAndrews.
PLoS One, 2013 Aug 08; 8(7). PMID: 23922658    Free PMC article.
Connectivity, not frequency, determines the fate of a morpheme.
Daniela Barbara Keller, Jörg Schultz.
PLoS One, 2013 Aug 08; 8(7). PMID: 23922865    Free PMC article.
A probabilistic model of neutral and selective dynamics of protein network evolution.
Janusz Dutkowski, Jerzy Tiuryn.
J Comput Biol, 2013 Aug 13; 20(9). PMID: 23931333    Free PMC article.
Characterizing acupuncture de qi in mild cognitive impairment: relations with small-world efficiency of functional brain networks.
Lijun Bai, Ming Zhang, +7 authors, Lixing Lao.
Evid Based Complement Alternat Med, 2013 Aug 13; 2013. PMID: 23935659    Free PMC article.
Structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework.
Tuomo Mäki-Marttunen, Jugoslava Aćimović, Keijo Ruohonen, Marja-Leena Linne.
PLoS One, 2013 Aug 13; 8(7). PMID: 23935998    Free PMC article.
Stability of whole brain and regional network topology within and between resting and cognitive states.
Justyna K Rzucidlo, Paige L Roseman, Paul J Laurienti, Dale Dagenbach.
PLoS One, 2013 Aug 14; 8(8). PMID: 23940554    Free PMC article.
Phonological similarity influences word learning in adults learning Spanish as a foreign language.
Melissa K Stamer, Michael S Vitevitch.
Biling (Camb Engl), 2013 Aug 21; 15(3). PMID: 23950692    Free PMC article.
Systematic, cross-cortex variation in neuron numbers in rodents and primates.
Christine J Charvet, Diarmuid J Cahalane, Barbara L Finlay.
Cereb Cortex, 2013 Aug 21; 25(1). PMID: 23960207    Free PMC article.
Increased global and local efficiency of human brain anatomical networks detected with FLAIR-DTI compared to non-FLAIR-DTI.
Shumei Li, Bin Wang, +6 authors, Ruiwang Huang.
PLoS One, 2013 Aug 24; 8(8). PMID: 23967170    Free PMC article.
Disrupted modular organization of resting-state cortical functional connectivity in U.S. military personnel following concussive 'mild' blast-related traumatic brain injury.
Kihwan Han, Christine L Mac Donald, +8 authors, David L Brody.
Neuroimage, 2013 Aug 24; 84. PMID: 23968735    Free PMC article.
Evidence for hubs in human functional brain networks.
Jonathan D Power, Bradley L Schlaggar, Christina N Lessov-Schlaggar, Steven E Petersen.
Neuron, 2013 Aug 27; 79(4). PMID: 23972601    Free PMC article.
Highly Cited.
Climate dynamics: a network-based approach for the analysis of global precipitation.
Stefania Scarsoglio, Francesco Laio, Luca Ridolfi.
PLoS One, 2013 Aug 27; 8(8). PMID: 23976991    Free PMC article.
Cluster-based statistics for brain connectivity in correlation with behavioral measures.
Cheol E Han, Sang Wook Yoo, +2 authors, Joon-Kyung Seong.
PLoS One, 2013 Aug 27; 8(8). PMID: 23977281    Free PMC article.
Deciphering the global organization of clustering in real complex networks.
Pol Colomer-de-Simón, M Ángeles Serrano, +2 authors, Marián Boguñá.
Sci Rep, 2013 Aug 29; 3. PMID: 23982757    Free PMC article.
Non-uniformity of cell density and networks in the monkey brain.
Masanori Shimono.
Sci Rep, 2013 Aug 30; 3. PMID: 23985926    Free PMC article.
Scaling of topologically similar functional modules defines mouse primary auditory and somatosensory microcircuitry.
Alexander J Sadovsky, Jason N MacLean.
J Neurosci, 2013 Aug 30; 33(35). PMID: 23986241    Free PMC article.
Stem cell systems informatics for advanced clinical biodiagnostics: tracing molecular signatures from bench to bedside.
Randolph S Faustino, D Kent Arrell, +2 authors, Carmen Perez-Terzic.
Croat Med J, 2013 Aug 30; 54(4). PMID: 23986272    Free PMC article.
Review.
Community structure in the phonological network.
Cynthia S Q Siew.
Front Psychol, 2013 Aug 30; 4. PMID: 23986735    Free PMC article.
Efficient learning strategy of Chinese characters based on network approach.
Xiaoyong Yan, Ying Fan, +2 authors, Jinshan Wu.
PLoS One, 2013 Aug 31; 8(8). PMID: 23990887    Free PMC article.
A Graph theoretical approach to study the organization of the cortical networks during different mathematical tasks.
Manousos A Klados, Kassia Kanatsouli, +4 authors, Sifis Micheloyannis.
PLoS One, 2013 Aug 31; 8(8). PMID: 23990992    Free PMC article.
Intra- and inter-frequency brain network structure in health and schizophrenia.
Felix Siebenhühner, Shennan A Weiss, +2 authors, Danielle S Bassett.
PLoS One, 2013 Aug 31; 8(8). PMID: 23991097    Free PMC article.
Entitymetrics: measuring the impact of entities.
Ying Ding, Min Song, +4 authors, Tamy Chambers.
PLoS One, 2013 Sep 07; 8(8). PMID: 24009660    Free PMC article.
A study of brain networks associated with swallowing using graph-theoretical approaches.
Bo Luan, Peter Sörös, Ervin Sejdić.
PLoS One, 2013 Sep 07; 8(8). PMID: 24009758    Free PMC article.
Reconfiguration of network hub structure after propofol-induced unconsciousness.
Heonsoo Lee, George A Mashour, +2 authors, UnCheol Lee.
Anesthesiology, 2013 Sep 10; 119(6). PMID: 24013572    Free PMC article.
Exact controllability of complex networks.
Zhengzhong Yuan, Chen Zhao, +2 authors, Ying-Cheng Lai.
Nat Commun, 2013 Sep 13; 4. PMID: 24025746    Free PMC article.
Structural and Functional Analysis of Giant Strong Component of Bacillus thuringiensis Metabolic Network.
D W Ding, Y R Ding, +2 authors, W B Xu.
Braz J Microbiol, 2009 Apr 01; 40(2). PMID: 24031381    Free PMC article.
Semantic organization in children with cochlear implants: computational analysis of verbal fluency.
Yoed N Kenett, Deena Wechsler-Kashi, +3 authors, Miriam Faust.
Front Psychol, 2013 Sep 14; 4. PMID: 24032018    Free PMC article.
C-element: a new clustering algorithm to find high quality functional modules in PPI networks.
Mahdieh Ghasemi, Maseud Rahgozar, Gholamreza Bidkhori, Ali Masoudi-Nejad.
PLoS One, 2013 Sep 17; 8(9). PMID: 24039752    Free PMC article.
Test-retest reliability of graph metrics in functional brain networks: a resting-state fNIRS study.
Haijing Niu, Zhen Li, +5 authors, Yong He.
PLoS One, 2013 Sep 17; 8(9). PMID: 24039763    Free PMC article.
SSVEP response is related to functional brain network topology entrained by the flickering stimulus.
Yangsong Zhang, Peng Xu, +2 authors, Dezhong Yao.
PLoS One, 2013 Sep 17; 8(9). PMID: 24039789    Free PMC article.
Correlations between community structure and link formation in complex networks.
Zhen Liu, Jia-Lin He, Komal Kapoor, Jaideep Srivastava.
PLoS One, 2013 Sep 17; 8(9). PMID: 24039818    Free PMC article.
A network-based method to assess the statistical significance of mild co-regulation effects.
Emőke-Ágnes Horvát, Jitao David Zhang, +2 authors, Katharina Anna Zweig.
PLoS One, 2013 Sep 17; 8(9). PMID: 24039936    Free PMC article.
Long-term effects of attentional performance on functional brain network topology.
Thomas P K Breckel, Christiane M Thiel, +3 authors, Carsten Giessing.
PLoS One, 2013 Sep 17; 8(9). PMID: 24040185    Free PMC article.
Topology of molecular interaction networks.
Wynand Winterbach, Piet Van Mieghem, +2 authors, Dick de Ridder.
BMC Syst Biol, 2013 Sep 18; 7. PMID: 24041013    Free PMC article.
Review.
An integrated quantitative proteomics and systems biology approach to explore synaptic protein profile changes during morphine exposure.
Steven D Stockton, Lakshmi A Devi.
Neuropsychopharmacology, 2013 Sep 21; 39(1). PMID: 24045585    Free PMC article.
Review.
Graph theory reveals dysconnected hubs in 22q11DS and altered nodal efficiency in patients with hallucinations.
Marie-Christine Ottet, Marie Schaer, +3 authors, Stephan Eliez.
Front Hum Neurosci, 2013 Sep 21; 7. PMID: 24046733    Free PMC article.
Clique size and network characteristics in hyperlink cinema. Constraints of evolved psychology.
Jaimie Arona Krems, R I M Dunbar.
Hum Nat, 2013 Sep 24; 24(4). PMID: 24057138
Network-level structural abnormalities of cerebral cortex in type 1 diabetes mellitus.
In Kyoon Lyoo, Sujung Yoon, +13 authors, Alan M Jacobson.
PLoS One, 2013 Sep 24; 8(8). PMID: 24058401    Free PMC article.
Task vs. rest-different network configurations between the coactivation and the resting-state brain networks.
Xin Di, Suril Gohel, Eun H Kim, Bharat B Biswal.
Front Hum Neurosci, 2013 Sep 26; 7. PMID: 24062654    Free PMC article.
A latent parameter node-centric model for spatial networks.
Nicholas D Larusso, Brian E Ruttenberg, Ambuj Singh.
PLoS One, 2013 Oct 03; 8(9). PMID: 24086251    Free PMC article.
Quantum Google in a complex network.
Giuseppe Davide Paparo, Markus Müller, Francesc Comellas, Miguel Angel Martin-Delgado.
Sci Rep, 2013 Oct 05; 3. PMID: 24091980    Free PMC article.
A predictive network model of cerebral cortical connectivity based on a distance rule.
Mária Ercsey-Ravasz, Nikola T Markov, +4 authors, Henry Kennedy.
Neuron, 2013 Oct 08; 80(1). PMID: 24094111    Free PMC article.
Highly Cited.
State-related functional integration and functional segregation brain networks in schizophrenia.
Qingbao Yu, Jing Sui, +2 authors, Vince D Calhoun.
Schizophr Res, 2013 Oct 08; 150(2-3). PMID: 24094882    Free PMC article.
Imaging structural and functional brain networks in temporal lobe epilepsy.
Boris C Bernhardt, Seokjun Hong, Andrea Bernasconi, Neda Bernasconi.
Front Hum Neurosci, 2013 Oct 08; 7. PMID: 24098281    Free PMC article.
Review.
Exploring the brains of Baduk (Go) experts: gray matter morphometry, resting-state functional connectivity, and graph theoretical analysis.
Wi Hoon Jung, Sung Nyun Kim, +4 authors, Jun Soo Kwon.
Front Hum Neurosci, 2013 Oct 10; 7. PMID: 24106471    Free PMC article.
Synconset waves and chains: spiking onsets in synchronous populations predict and are predicted by network structure.
Mohan Raghavan, Bharadwaj Amrutur, Rishikesh Narayanan, Sujit Kumar Sikdar.
PLoS One, 2013 Oct 12; 8(10). PMID: 24116018    Free PMC article.
Leadership in complex networks: the importance of network position and strategic action in a translational cancer research network.
Janet C Long, Frances C Cunningham, +2 authors, Jeffrey Braithwaite.
Implement Sci, 2013 Oct 15; 8. PMID: 24120075    Free PMC article.
Identifying overlapping communities as well as hubs and outliers via nonnegative matrix factorization.
Xiaochun Cao, Xiao Wang, +2 authors, Dongxiao He.
Sci Rep, 2013 Oct 17; 3. PMID: 24129402    Free PMC article.
Community structure and multi-modal oscillations in complex networks.
Henry Dorrian, Jon Borresen, Martyn Amos.
PLoS One, 2013 Oct 17; 8(10). PMID: 24130720    Free PMC article.
Methods and approaches in the topology-based analysis of biological pathways.
Cristina Mitrea, Zeinab Taghavi, +5 authors, Sorin Drăghici.
Front Physiol, 2013 Oct 18; 4. PMID: 24133454    Free PMC article.
Review.
Imaging connectivity: MRI and the structural networks of the brain.
Jonathan D Clayden.
Funct Neurol, 2013 Oct 22; 28(3). PMID: 24139656    Free PMC article.
Review.
Human opinion dynamics: an inspiration to solve complex optimization problems.
Rishemjit Kaur, Ritesh Kumar, Amol P Bhondekar, Pawan Kapur.
Sci Rep, 2013 Oct 22; 3. PMID: 24141795    Free PMC article.
Dynamic change of global and local information processing in propofol-induced loss and recovery of consciousness.
Martin M Monti, Evan S Lutkenhoff, +7 authors, Steven Laureys.
PLoS Comput Biol, 2013 Oct 23; 9(10). PMID: 24146606    Free PMC article.
Stress-induced changes in gene interactions in human cells.
Renuka R Nayak, William E Bernal, +2 authors, Vivian G Cheung.
Nucleic Acids Res, 2013 Oct 31; 42(3). PMID: 24170811    Free PMC article.
Structure and function of complex brain networks.
Olaf Sporns.
Dialogues Clin Neurosci, 2013 Nov 01; 15(3). PMID: 24174898    Free PMC article.
Highly Cited. Review.
Graph-based network analysis in schizophrenia.
Sifis Micheloyannis.
World J Psychiatry, 2012 Feb 22; 2(1). PMID: 24175163    Free PMC article.
Cortical high-density counterstream architectures.
Nikola T Markov, Mária Ercsey-Ravasz, +3 authors, Henry Kennedy.
Science, 2013 Nov 02; 342(6158). PMID: 24179228    Free PMC article.
Highly Cited. Review.
Altered functional and structural brain network organization in autism.
J D Rudie, J A Brown, +5 authors, M Dapretto.
Neuroimage Clin, 2012 Jan 01; 2. PMID: 24179761    Free PMC article.
Highly Cited.
Disturbed resting state EEG synchronization in bipolar disorder: A graph-theoretic analysis.
Dae-Jin Kim, Amanda R Bolbecker, +5 authors, Brian F O'Donnell.
Neuroimage Clin, 2013 Nov 02; 2. PMID: 24179795    Free PMC article.
Scaling brain size, keeping timing: evolutionary preservation of brain rhythms.
György Buzsáki, Nikos Logothetis, Wolf Singer.
Neuron, 2013 Nov 05; 80(3). PMID: 24183025    Free PMC article.
Highly Cited. Review.
Automated analysis of phylogenetic clusters.
Manon Ragonnet-Cronin, Emma Hodcroft, +5 authors, UK HIV Drug Resistance Database.
BMC Bioinformatics, 2013 Nov 07; 14. PMID: 24191891    Free PMC article.
Highly Cited.
Graph theoretical analysis of developmental patterns of the white matter network.
Zhang Chen, Min Liu, Donald W Gross, Christian Beaulieu.
Front Hum Neurosci, 2013 Nov 08; 7. PMID: 24198774    Free PMC article.
Sex chromosome complement regulates expression of mood-related genes.
Marianne L Seney, Kokomma I Ekong, +2 authors, Etienne Sibille.
Biol Sex Differ, 2013 Nov 10; 4(1). PMID: 24199867    Free PMC article.
Altered resting state brain networks in Parkinson's disease.
Martin Göttlich, Thomas F Münte, +3 authors, Ulrike M Krämer.
PLoS One, 2013 Nov 10; 8(10). PMID: 24204812    Free PMC article.
Highly Cited.
Identifying influential nodes in large-scale directed networks: the role of clustering.
Duan-Bing Chen, Hui Gao, Linyuan Lü, Tao Zhou.
PLoS One, 2013 Nov 10; 8(10). PMID: 24204833    Free PMC article.
Functional brain networks: random, "small world" or deterministic?
Katarzyna J Blinowska, Maciej Kaminski.
PLoS One, 2013 Nov 10; 8(10). PMID: 24205313    Free PMC article.
Functional connectivity and graph theory in preclinical Alzheimer's disease.
Matthew R Brier, Jewell B Thomas, +5 authors, Beau M Ances.
Neurobiol Aging, 2013 Nov 13; 35(4). PMID: 24216223    Free PMC article.
Highly Cited.
Aging brain from a network science perspective: something to be positive about?
Michelle W Voss, Chelsea N Wong, +6 authors, Arthur F Kramer.
PLoS One, 2013 Nov 14; 8(11). PMID: 24223147    Free PMC article.
Temporal binding of sound emerges out of anatomical structure and synaptic dynamics of auditory cortex.
Patrick J C May, Hannu Tiitinen.
Front Comput Neurosci, 2013 Nov 14; 7. PMID: 24223549    Free PMC article.
Identification of the Epileptogenic Zone from Stereo-EEG Signals: A Connectivity-Graph Theory Approach.
Ferruccio Panzica, Giulia Varotto, +2 authors, Silvana Franceschetti.
Front Neurol, 2013 Nov 14; 4. PMID: 24223569    Free PMC article.
Review.
Frequency response and gap tuning for nonlinear electrical oscillator networks.
Harish S Bhat, Garnet J Vaz.
PLoS One, 2013 Nov 14; 8(11). PMID: 24223751    Free PMC article.
A solution to the challenge of optimization on ''golf-course''-like fitness landscapes.
Hygor Piaget M Melo, Alexander Franks, +3 authors, Luís A Nunes Amaral.
PLoS One, 2013 Nov 14; 8(11). PMID: 24223800    Free PMC article.
Large scale brain functional networks support sentence comprehension: evidence from both explicit and implicit language tasks.
Zude Zhu, Yuanyuan Fan, +2 authors, Suiping Wang.
PLoS One, 2013 Nov 19; 8(11). PMID: 24244653    Free PMC article.
Sharp bounds and normalization of Wiener-type indices.
Dechao Tian, Kwok Pui Choi.
PLoS One, 2013 Nov 22; 8(11). PMID: 24260118    Free PMC article.
Vulnerability analysis and passenger source prediction in urban rail transit networks.
Junjie Wang, Yishuai Li, +2 authors, Pu Wang.
PLoS One, 2013 Nov 22; 8(11). PMID: 24260355    Free PMC article.
Insights into failed lexical retrieval from network science.
Michael S Vitevitch, Kit Ying Chan, Rutherford Goldstein.
Cogn Psychol, 2013 Nov 26; 68. PMID: 24269488    Free PMC article.
DCGL v2.0: an R package for unveiling differential regulation from differential co-expression.
Jing Yang, Hui Yu, +5 authors, Yuan-Yuan Li.
PLoS One, 2013 Nov 28; 8(11). PMID: 24278165    Free PMC article.
High-frequency stimulation of excitable cells and networks.
Seth H Weinberg.
PLoS One, 2013 Nov 28; 8(11). PMID: 24278435    Free PMC article.
A machine learning approach to automated structural network analysis: application to neonatal encephalopathy.
Etay Ziv, Olga Tymofiyeva, +3 authors, Duan Xu.
PLoS One, 2013 Nov 28; 8(11). PMID: 24282501    Free PMC article.
Using the bipartite human phenotype network to reveal pleiotropy and epistasis beyond the gene.
Christian Darabos, Samantha H Harmon, Jason H Moore.
Pac Symp Biocomput, 2013 Dec 04;. PMID: 24297546    Free PMC article.
A probabilistic model of functional brain connectivity network for discovering novel biomarkers.
Jiang Bian, Mengjun Xie, Umit Topaloglu, Josh M Cisler.
AMIA Jt Summits Transl Sci Proc, 2013 Dec 05; 2013. PMID: 24303289    Free PMC article.
Structural Effects of Network Sampling Coverage I: Nodes Missing at Random1.
Jeffrey A Smith, James Moody.
Soc Networks, 2013 Dec 07; 35(4). PMID: 24311893    Free PMC article.
Metapopulation dynamics enable persistence of influenza A, including A/H5N1, in poultry.
Parviez Rana Hosseini, Trevon Fuller, +8 authors, Peter Daszak.
PLoS One, 2013 Dec 07; 8(12). PMID: 24312455    Free PMC article.
Defining nodes in complex brain networks.
Matthew L Stanley, Malaak N Moussa, +3 authors, Paul J Laurienti.
Front Comput Neurosci, 2013 Dec 10; 7. PMID: 24319426    Free PMC article.
Review.
Universality in network dynamics.
Baruch Barzel, Albert-László Barabási.
Nat Phys, 2013 Dec 10; 9. PMID: 24319492    Free PMC article.
Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders.
C Gaiteri, Y Ding, +2 authors, E Sibille.
Genes Brain Behav, 2013 Dec 11; 13(1). PMID: 24320616    Free PMC article.
Highly Cited. Review.
Development of human brain structural networks through infancy and childhood.
Hao Huang, Ni Shu, +9 authors, Yong He.
Cereb Cortex, 2013 Dec 18; 25(5). PMID: 24335033    Free PMC article.
High strength-of-ties and low mobility enable the evolution of third-party punishment.
Patrick Roos, Michele Gelfand, Dana Nau, Ryan Carr.
Proc Biol Sci, 2013 Dec 18; 281(1776). PMID: 24335985    Free PMC article.
Preferential detachment during human brain development: age- and sex-specific structural connectivity in diffusion tensor imaging (DTI) data.
Sol Lim, Cheol E Han, Peter J Uhlhaas, Marcus Kaiser.
Cereb Cortex, 2013 Dec 18; 25(6). PMID: 24343892    Free PMC article.
Abnormal organization of white matter network in patients with no dementia after ischemic stroke.
Lin Shi, Defeng Wang, +6 authors, Vincent C T Mok.
PLoS One, 2013 Dec 19; 8(12). PMID: 24349063    Free PMC article.
Dynamic source routing strategy for two-level flows on scale-free networks.
Zhong-Yuan Jiang, Man-Gui Liang, Jia-Jing Wu.
PLoS One, 2013 Dec 19; 8(12). PMID: 24349207    Free PMC article.
Influence of APOE genotype on whole-brain functional networks in cognitively normal elderly.
Eun Hyun Seo, Dong Young Lee, +6 authors, Jong Inn Woo.
PLoS One, 2013 Dec 19; 8(12). PMID: 24349461    Free PMC article.
Simulating the dynamics of scale-free networks via optimization.
Tiago Alves Schieber, Martín Gómez Ravetti.
PLoS One, 2013 Dec 20; 8(12). PMID: 24353752    Free PMC article.
Resilience and controllability of dynamic collective behaviors.
Mohammad Komareji, Roland Bouffanais.
PLoS One, 2013 Dec 21; 8(12). PMID: 24358209    Free PMC article.
Disrupted topological organization in whole-brain functional networks of heroin-dependent individuals: a resting-state FMRI study.
Guihua Jiang, Xue Wen, +6 authors, Ruiwang Huang.
PLoS One, 2013 Dec 21; 8(12). PMID: 24358220    Free PMC article.
Network efficiency in autism spectrum disorder and its relation to brain overgrowth.
John D Lewis, Rebecca J Theilmann, Jeanne Townsend, Alan C Evans.
Front Hum Neurosci, 2013 Dec 26; 7. PMID: 24368901    Free PMC article.
Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma.
Meeta P Pradhan, Akshay Desai, Mathew J Palakal.
BMC Syst Biol, 2013 Dec 27; 7. PMID: 24369052    Free PMC article.
A comparative study of theoretical graph models for characterizing structural networks of human brain.
Xiaojin Li, Xintao Hu, +5 authors, Lingjiang Li.
Int J Biomed Imaging, 2013 Dec 27; 2013. PMID: 24369454    Free PMC article.
Study on incompatibility of traditional chinese medicine: evidence from formula network, chemical space, and metabolism room.
Wei Long, Xiao-Dong Zhang, +8 authors, Sai-Jun Fan.
Evid Based Complement Alternat Med, 2013 Dec 27; 2013. PMID: 24369478    Free PMC article.
Longitudinal development of cortical thickness, folding, and fiber density networks in the first 2 years of life.
Jingxin Nie, Gang Li, +4 authors, Dinggang Shen.
Hum Brain Mapp, 2014 Jan 01; 35(8). PMID: 24375724    Free PMC article.
Brain network evolution after stroke based on computational experiments.
Wei Li, Yue Huang, Yapeng Li, Xi Chen.
PLoS One, 2014 Jan 01; 8(12). PMID: 24376592    Free PMC article.
Altered topological organization of cortical network in adolescent girls with idiopathic scoliosis.
Defeng Wang, Lin Shi, +4 authors, Winnie C W Chu.
PLoS One, 2014 Jan 01; 8(12). PMID: 24376742    Free PMC article.
B-cell lymphoma gene regulatory networks: biological consistency among inference methods.
Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert-Streib.
Front Genet, 2014 Jan 01; 4. PMID: 24379827    Free PMC article.
Genetic interaction networks: better understand to better predict.
Benjamin Boucher, Sarah Jenna.
Front Genet, 2014 Jan 02; 4. PMID: 24381582    Free PMC article.
Review.
Functional connectivity networks with and without global signal correction.
Satoru Hayasaka.
Front Hum Neurosci, 2014 Jan 05; 7. PMID: 24385961    Free PMC article.
Healthcare worker contact networks and the prevention of hospital-acquired infections.
Donald E Curtis, Christopher S Hlady, +3 authors, Alberto M Segre.
PLoS One, 2014 Jan 05; 8(12). PMID: 24386075    Free PMC article.
Matching rules for collective behaviors on complex networks: optimal configurations for vibration frequencies of networked harmonic oscillators.
Meng Zhan, Shuai Liu, Zhiwei He.
PLoS One, 2014 Jan 05; 8(12). PMID: 24386088    Free PMC article.
Inhibition of propofol anesthesia on functional connectivity between LFPs in PFC during rat working memory task.
Xinyu Xu, Yu Tian, +3 authors, Xin Tian.
PLoS One, 2014 Jan 05; 8(12). PMID: 24386243    Free PMC article.
Opinion formation and the collective dynamics of risk perception.
Mehdi Moussaïd.
PLoS One, 2014 Jan 05; 8(12). PMID: 24386398    Free PMC article.
Role of social environment and social clustering in spread of opinions in coevolving networks.
Nishant Malik, Peter J Mucha.
Chaos, 2014 Jan 07; 23(4). PMID: 24387562    Free PMC article.
Extracting tag hierarchies.
Gergely Tibély, Péter Pollner, Tamás Vicsek, Gergely Palla.
PLoS One, 2014 Jan 07; 8(12). PMID: 24391901    Free PMC article.
Cascading failures in spatially-embedded random networks.
Andrea Asztalos, Sameet Sreenivasan, Boleslaw K Szymanski, Gyorgy Korniss.
PLoS One, 2014 Jan 09; 9(1). PMID: 24400101    Free PMC article.
What You Believe Travels Differently: Information and Infection Dynamics across Sub-networks.
Patrick Grim, Christopher Reade, +2 authors, Stephen Majewicz.
Connect (Tor), 2010 Dec 01; 30(2). PMID: 24409006    Free PMC article.
Dimensionality and size scaling of coordinated Ca(2+) dynamics in MIN6 β-cell clusters.
Thomas H Hraha, Abigail B Bernard, +2 authors, Richard K P Benninger.
Biophys J, 2014 Jan 15; 106(1). PMID: 24411262    Free PMC article.
The fragile elderly hip: mechanisms associated with age-related loss of strength and toughness.
Jonathan Reeve, Nigel Loveridge.
Bone, 2014 Jan 15; 61. PMID: 24412288    Free PMC article.
Review.
Impulsive control for synchronizing delayed discrete complex networks with switching topology.
Chaojie Li, David Y Gao, Chao Liu, Guo Chen.
Neural Comput Appl, 2014 Jan 15; 24(1). PMID: 24415851    Free PMC article.
Communication efficiency and congestion of signal traffic in large-scale brain networks.
Bratislav Mišić, Olaf Sporns, Anthony R McIntosh.
PLoS Comput Biol, 2014 Jan 15; 10(1). PMID: 24415931    Free PMC article.
Addressing head motion dependencies for small-world topologies in functional connectomics.
Chao-Gan Yan, R Cameron Craddock, Yong He, Michael P Milham.
Front Hum Neurosci, 2014 Jan 15; 7. PMID: 24421764    Free PMC article.
Highly Cited.
Abruptness of cascade failures in power grids.
Sakshi Pahwa, Caterina Scoglio, Antonio Scala.
Sci Rep, 2014 Jan 16; 4. PMID: 24424239    Free PMC article.
Neuroimaging of epilepsy: lesions, networks, oscillations.
E Abela, C Rummel, +3 authors, R Wiest.
Clin Neuroradiol, 2014 Jan 16; 24(1). PMID: 24424576
Review.
Synchronization of neuron population subject to steady DC electric field induced by magnetic stimulation.
Kai Yu, Jiang Wang, Bin Deng, Xile Wei.
Cogn Neurodyn, 2014 Jan 16; 7(3). PMID: 24427204    Free PMC article.
On Learning Cluster Coefficient of Private Networks.
Yue Wang, Xintao Wu, Jun Zhu, Yang Xiang.
Soc Netw Anal Min, 2012 Jan 01;. PMID: 24429843    Free PMC article.
Protein interaction networks as metric spaces: a novel perspective on distribution of hubs.
Emad Fadhal, Junaid Gamieldien, Eric C Mwambene.
BMC Syst Biol, 2014 Jan 21; 8. PMID: 24438364    Free PMC article.
Understanding the temporal evolution of neuronal connectivity in cultured networks using statistical analysis.
Alessandro Napoli, Jichun Xie, Iyad Obeid.
BMC Neurosci, 2014 Jan 22; 15. PMID: 24443925    Free PMC article.
A diversity of localized timescales in network activity.
Rishidev Chaudhuri, Alberto Bernacchia, Xiao-Jing Wang.
Elife, 2014 Jan 23; 3. PMID: 24448407    Free PMC article.
Rumor diffusion in an interests-based dynamic social network.
Mingsheng Tang, Xinjun Mao, Zahia Guessoum, Huiping Zhou.
ScientificWorldJournal, 2014 Jan 24; 2013. PMID: 24453911    Free PMC article.
The Laplacian spectrum of neural networks.
Siemon C de Lange, Marcel A de Reus, Martijn P van den Heuvel.
Front Comput Neurosci, 2014 Jan 24; 7. PMID: 24454286    Free PMC article.
Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity.
Arjen van Ooyen, Andrew Carnell, +5 authors, Jaap van Pelt.
PLoS One, 2014 Jan 24; 9(1). PMID: 24454938    Free PMC article.
Altered network properties of the fronto-parietal network and the thalamus in impaired consciousness.
Julia Sophia Crone, Andrea Soddu, +7 authors, Martin Kronbichler.
Neuroimage Clin, 2014 Jan 24; 4. PMID: 24455474    Free PMC article.
The multiscale backbone of the human phenotype network based on biological pathways.
Christian Darabos, Marquitta J White, +3 authors, Jason H Moore.
BioData Min, 2014 Jan 28; 7(1). PMID: 24460644    Free PMC article.
Time domain measures of inter-channel EEG correlations: a comparison of linear, nonparametric and nonlinear measures.
J D Bonita, L C C Ambolode, +4 authors, A M Albano.
Cogn Neurodyn, 2014 Jan 28; 8(1). PMID: 24465281    Free PMC article.
Review.
A linear model for characterization of synchronization frequencies of neural networks.
Peili Lv, Xintao Hu, +3 authors, Tianming Liu.
Cogn Neurodyn, 2014 Jan 28; 8(1). PMID: 24465286    Free PMC article.
Acute NMDA receptor antagonism disrupts synchronization of action potential firing in rat prefrontal cortex.
Leonardo A Molina, Ivan Skelin, Aaron J Gruber.
PLoS One, 2014 Jan 28; 9(1). PMID: 24465743    Free PMC article.
Association of structural global brain network properties with intelligence in normal aging.
Florian U Fischer, Dominik Wolf, Armin Scheurich, Andreas Fellgiebel.
PLoS One, 2014 Jan 28; 9(1). PMID: 24465994    Free PMC article.
Allosteric regulation of the Hsp90 dynamics and stability by client recruiter cochaperones: protein structure network modeling.
Kristin Blacklock, Gennady M Verkhivker.
PLoS One, 2014 Jan 28; 9(1). PMID: 24466147    Free PMC article.
The effect of souvenaid on functional brain network organisation in patients with mild Alzheimer's disease: a randomised controlled study.
Hanneke de Waal, Cornelis J Stam, +5 authors, Elisabeth C W van Straaten.
PLoS One, 2014 Jan 30; 9(1). PMID: 24475144    Free PMC article.
Phase synchrony facilitates binding and segmentation of natural images in a coupled neural oscillator network.
Holger Finger, Peter König.
Front Comput Neurosci, 2014 Jan 31; 7. PMID: 24478685    Free PMC article.
Optimal transport on weighted networks for different node delivery capability schemes.
Fei Shao.
ScientificWorldJournal, 2014 Feb 04; 2013. PMID: 24489500    Free PMC article.
Emergence of small-world anatomical networks in self-organizing clustered neuronal cultures.
Daniel de Santos-Sierra, Irene Sendiña-Nadal, +5 authors, Stefano Boccaletti.
PLoS One, 2014 Feb 04; 9(1). PMID: 24489675    Free PMC article.
A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases.
Xiaofei Yang, Lin Gao, +4 authors, Bingbo Wang.
PLoS One, 2014 Feb 06; 9(1). PMID: 24498199    Free PMC article.
A healthy brain in a healthy body: brain network correlates of physical and mental fitness.
Linda Douw, Dagmar Nieboer, +2 authors, Jos W R Twisk.
PLoS One, 2014 Feb 06; 9(2). PMID: 24498438    Free PMC article.
How pattern formation in ring networks of excitatory and inhibitory spiking neurons depends on the input current regime.
Birgit Kriener, Moritz Helias, +2 authors, Gaute T Einevoll.
Front Comput Neurosci, 2014 Feb 07; 7. PMID: 24501591    Free PMC article.
Role of frequency mismatch in neuronal communication through coherence.
Belén Sancristóbal, Raul Vicente, Jordi Garcia-Ojalvo.
J Comput Neurosci, 2014 Feb 13; 37(2). PMID: 24519733
Resting-state EEG oscillatory dynamics in fragile X syndrome: abnormal functional connectivity and brain network organization.
Melle J W van der Molen, Cornelis J Stam, Maurits W van der Molen.
PLoS One, 2014 Feb 14; 9(2). PMID: 24523898    Free PMC article.
Spontaneous symmetry breaking in interdependent networked game.
Qing Jin, Lin Wang, Cheng-Yi Xia, Zhen Wang.
Sci Rep, 2014 Feb 15; 4. PMID: 24526076    Free PMC article.
Self-healing networks: redundancy and structure.
Walter Quattrociocchi, Guido Caldarelli, Antonio Scala.
PLoS One, 2014 Feb 18; 9(2). PMID: 24533065    Free PMC article.
A quantitative neural network approach to understanding aging phenotypes.
Jessica A Ash, Peter R Rapp.
Ageing Res Rev, 2014 Feb 20; 15. PMID: 24548925    Free PMC article.
Review.
Protein intrinsic disorder and network connectivity. The case of 14-3-3 proteins.
Marina Uhart, Diego M Bustos.
Front Genet, 2014 Feb 20; 5. PMID: 24550932    Free PMC article.
Review.
Structured connectivity in cerebellar inhibitory networks.
Sarah Rieubland, Arnd Roth, Michael Häusser.
Neuron, 2014 Feb 25; 81(4). PMID: 24559679    Free PMC article.
Social network analysis of biomedical research collaboration networks in a CTSA institution.
Jiang Bian, Mengjun Xie, +3 authors, William Hogan.
J Biomed Inform, 2014 Feb 25; 52. PMID: 24560679    Free PMC article.
Two-Dimensional Tomography from Noisy Projections Taken at Unknown Random Directions.
A Singer, H-T Wu.
SIAM J Imaging Sci, 2014 Feb 25; 6(1). PMID: 24563691    Free PMC article.
Handedness- and hemisphere-related differences in small-world brain networks: a diffusion tensor imaging tractography study.
Meiling Li, Heng Chen, +7 authors, Huafu Chen.
Brain Connect, 2014 Feb 26; 4(2). PMID: 24564422    Free PMC article.
An analysis of a large dataset on immigrant integration in Spain. The statistical mechanics perspective on social action.
Adriano Barra, Pierluigi Contucci, Rickard Sandell, Cecilia Vernia.
Sci Rep, 2014 Feb 26; 4. PMID: 24566475    Free PMC article.
Graph theoretical analysis indicates cognitive impairment in MS stems from neural disconnection.
Jeroen Van Schependom, Jeroen Gielen, +3 authors, Guy Nagels.
Neuroimage Clin, 2014 Feb 26; 4. PMID: 24567912    Free PMC article.
Reconfiguration and search of social networks.
Lianming Zhang, Aoyuan Peng, Jianping Yu.
ScientificWorldJournal, 2014 Feb 28; 2013. PMID: 24574861    Free PMC article.
Constancy and trade-offs in the neuroanatomical and metabolic design of the cerebral cortex.
Jan Karbowski.
Front Neural Circuits, 2014 Feb 28; 8. PMID: 24574975    Free PMC article.
Review.
Age-related differences in advantageous decision making are associated with distinct differences in functional community structure.
Malaak Nasser Moussa, Michael J Wesley, +4 authors, Paul J Laurienti.
Brain Connect, 2014 Mar 01; 4(3). PMID: 24575804    Free PMC article.
The relative ineffectiveness of criminal network disruption.
Paul A C Duijn, Victor Kashirin, Peter M A Sloot.
Sci Rep, 2014 Mar 01; 4. PMID: 24577374    Free PMC article.
Geometric assortative growth model for small-world networks.
Yilun Shang.
ScientificWorldJournal, 2014 Mar 01; 2014. PMID: 24578661    Free PMC article.
Game theory and extremal optimization for community detection in complex dynamic networks.
Rodica Ioana Lung, Camelia Chira, Anca Andreica.
PLoS One, 2014 Mar 04; 9(2). PMID: 24586257    Free PMC article.
Generalization of clustering coefficients to signed correlation networks.
Giulio Costantini, Marco Perugini.
PLoS One, 2014 Mar 04; 9(2). PMID: 24586367    Free PMC article.
Changes in topological organization of functional PET brain network with normal aging.
Zhiliang Liu, Lining Ke, +2 authors, Zhenghui Hu.
PLoS One, 2014 Mar 04; 9(2). PMID: 24586370    Free PMC article.
Node interference and robustness: performing virtual knock-out experiments on biological networks: the case of leukocyte integrin activation network.
Giovanni Scardoni, Alessio Montresor, Gabriele Tosadori, Carlo Laudanna.
PLoS One, 2014 Mar 04; 9(2). PMID: 24586448    Free PMC article.
Robustness of controllability for networks based on edge-attack.
Sen Nie, Xuwen Wang, +2 authors, Binghong Wang.
PLoS One, 2014 Mar 04; 9(2). PMID: 24586507    Free PMC article.
Benchmarking successional progress in a quantitative food web.
Alice Boit, Ursula Gaedke.
PLoS One, 2014 Mar 04; 9(2). PMID: 24587353    Free PMC article.
Modelling the yeast interactome.
Vuk Janjić, Roded Sharan, Nataša Pržulj.
Sci Rep, 2014 Mar 05; 4. PMID: 24589662    Free PMC article.
Socially structured human movement shapes dengue transmission despite the diffusive effect of mosquito dispersal.
Robert C Reiner, Steven T Stoddard, Thomas W Scott.
Epidemics, 2014 Mar 07; 6. PMID: 24593919    Free PMC article.
Revealing missing parts of the interactome via link prediction.
Yuriy Hulovatyy, Ryan W Solava, Tijana Milenković.
PLoS One, 2014 Mar 07; 9(3). PMID: 24594900    Free PMC article.
How to facilitate social contagion?
Karl Blanchet.
Int J Health Policy Manag, 2014 Mar 07; 1(3). PMID: 24596863    Free PMC article.
Collaboration networks from a large CV database: dynamics, topology and bonus impact.
Eduardo B Araújo, André A Moreira, +2 authors, José S Andrade.
PLoS One, 2014 Mar 08; 9(3). PMID: 24603470    Free PMC article.
Taming explosive growth through dynamic random links.
Anshul Choudhary, Vivek Kohar, Sudeshna Sinha.
Sci Rep, 2014 Mar 08; 4. PMID: 24603561    Free PMC article.
in silico identification of protein-protein interactions in Silkworm, Bombyx mori.
Ramasamy Sumathy, Ashwath Southekal Krishna Rao, Nalavadi Chandrakanth, Velliyur Kanniappan Gopalakrishnan.
Bioinformation, 2014 Mar 13; 10(2). PMID: 24616555    Free PMC article.
White matter damage disorganizes brain functional networks in amnestic mild cognitive impairment.
José Angel Pineda-Pardo, Pilar Garcés, +9 authors, Fernando Maestú.
Brain Connect, 2014 Mar 13; 4(5). PMID: 24617580    Free PMC article.
Gravity effects on information filtering and network evolving.
Jin-Hu Liu, Zi-Ke Zhang, +3 authors, Xueqi Wang.
PLoS One, 2014 Mar 14; 9(3). PMID: 24622162    Free PMC article.
Functional network architecture predicts psychologically mediated analgesia related to treatment in chronic knee pain patients.
Javeria Ali Hashmi, Jian Kong, +3 authors, Randy L Gollub.
J Neurosci, 2014 Mar 14; 34(11). PMID: 24623770    Free PMC article.
Noise induced complexity: patterns and collective phenomena in a small-world neuronal network.
Yanhong Zheng, Qingyun Wang, Marius-F Danca.
Cogn Neurodyn, 2014 Mar 14; 8(2). PMID: 24624233    Free PMC article.
Synchrony based learning rule of Hopfield like chaotic neural networks with desirable structure.
Nariman Mahdavi, Jürgen Kurths.
Cogn Neurodyn, 2014 Mar 14; 8(2). PMID: 24624234    Free PMC article.
Oscillations and synchrony in a cortical neural network.
Jingyi Qu, Rubin Wang, Chuankui Yan, Ying Du.
Cogn Neurodyn, 2014 Mar 14; 8(2). PMID: 24624235    Free PMC article.
A knowledge generation model via the hypernetwork.
Jian-Guo Liu, Guang-Yong Yang, Zhao-Long Hu.
PLoS One, 2014 Mar 15; 9(3). PMID: 24626143    Free PMC article.
A quantitative metric to identify critical elements within seafood supply networks.
Éva E Plagányi, Ingrid van Putten, +15 authors, Linda Thomas.
PLoS One, 2014 Mar 19; 9(3). PMID: 24633147    Free PMC article.
Effective connectivity of hippocampal neural network and its alteration in Mg2+-free epilepsy model.
Xin-Wei Gong, Jing-Bo Li, +2 authors, Pu-Ming Zhang.
PLoS One, 2014 Mar 25; 9(3). PMID: 24658094    Free PMC article.
Generalised power graph compression reveals dominant relationship patterns in complex networks.
Sebastian E Ahnert.
Sci Rep, 2014 Mar 26; 4. PMID: 24663099    Free PMC article.
Polarity-specific high-level information propagation in neural networks.
Yen-Nan Lin, Po-Yen Chang, Pao-Yueh Hsiao, Chung-Chuan Lo.
Front Neuroinform, 2014 Mar 29; 8. PMID: 24672472    Free PMC article.
The protein-protein interaction network of eyestalk, Y-organ and hepatopancreas in Chinese mitten crab Eriocheir sinensis.
Tong Hao, Zheng Zeng, +4 authors, Jinsheng Sun.
BMC Syst Biol, 2014 Mar 29; 8. PMID: 24674293    Free PMC article.
Resolving structural variability in network models and the brain.
Florian Klimm, Danielle S Bassett, Jean M Carlson, Peter J Mucha.
PLoS Comput Biol, 2014 Mar 29; 10(3). PMID: 24675546    Free PMC article.
An insulin-to-insulin regulatory network orchestrates phenotypic specificity in development and physiology.
Diana Andrea Fernandes de Abreu, Antonio Caballero, +25 authors, Queelim Ch'ng.
PLoS Genet, 2014 Mar 29; 10(3). PMID: 24675767    Free PMC article.
Comparative analysis of the macroscale structural connectivity in the macaque and human brain.
Alexandros Goulas, Matteo Bastiani, +3 authors, Peter Stiers.
PLoS Comput Biol, 2014 Mar 29; 10(3). PMID: 24676052    Free PMC article.
Scientific Networks on Data Landscapes: Question Difficulty, Epistemic Success, and Convergence.
Patrick Grim, Daniel J Singer, +5 authors, Adam Sales.
Episteme (Edinb), 2014 Apr 01; 10(4). PMID: 24683416    Free PMC article.
Network communities within and across borders.
Federica Cerina, Alessandro Chessa, Fabio Pammolli, Massimo Riccaboni.
Sci Rep, 2014 Apr 02; 4. PMID: 24686380    Free PMC article.
Contributions and challenges for network models in cognitive neuroscience.
Olaf Sporns.
Nat Neurosci, 2014 Apr 02; 17(5). PMID: 24686784
Highly Cited. Review.
Topological organization of the "small-world" visual attention network in children with attention deficit/hyperactivity disorder (ADHD).
Shugao Xia, John J Foxe, +2 authors, Xiaobo Li.
Front Hum Neurosci, 2014 Apr 02; 8. PMID: 24688465    Free PMC article.
Small world network strategies for studying protein structures and binding.
Neil R Taylor.
Comput Struct Biotechnol J, 2013 Jan 01; 5. PMID: 24688699    Free PMC article.
Review.
Studying the system-level involvement of microRNAs in Parkinson's disease.
Paulami Chatterjee, Malay Bhattacharyya, Sanghamitra Bandyopadhyay, Debjani Roy.
PLoS One, 2014 Apr 03; 9(4). PMID: 24690883    Free PMC article.
A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, +31 authors, Hongkui Zeng.
Nature, 2014 Apr 04; 508(7495). PMID: 24695228    Free PMC article.
Highly Cited.
Molecular nonlinear dynamics and protein thermal uncertainty quantification.
Kelin Xia, Guo-Wei Wei.
Chaos, 2014 Apr 05; 24(1). PMID: 24697365    Free PMC article.
Mapping the structure and dynamics of genomics-related MeSH terms complex networks.
Jesús M Siqueiros-García, Enrique Hernández-Lemus, Rodrigo García-Herrera, Andrea Robina-Galatas.
PLoS One, 2014 Apr 05; 9(4). PMID: 24699262    Free PMC article.
Influence of wiring cost on the large-scale architecture of human cortical connectivity.
David Samu, Anil K Seth, Thomas Nowotny.
PLoS Comput Biol, 2014 Apr 05; 10(4). PMID: 24699277    Free PMC article.
Imaging functional and structural brain connectomics in attention-deficit/hyperactivity disorder.
Miao Cao, Ni Shu, +2 authors, Yong He.
Mol Neurobiol, 2014 Apr 08; 50(3). PMID: 24705817
Review.
An application of evolutionary game theory to social dilemmas: the traveler's dilemma and the minimum effort coordination game.
Swami Iyer, Joshua Reyes, Timothy Killingback.
PLoS One, 2014 Apr 09; 9(4). PMID: 24709851    Free PMC article.
Towards a methodology for validation of centrality measures in complex networks.
Komal Batool, Muaz A Niazi.
PLoS One, 2014 Apr 09; 9(4). PMID: 24709999    Free PMC article.
Generalized friendship paradox in complex networks: the case of scientific collaboration.
Young-Ho Eom, Hang-Hyun Jo.
Sci Rep, 2014 Apr 10; 4. PMID: 24714092    Free PMC article.
Disturbed small-world networks and neurocognitive function in frontal lobe low-grade glioma patients.
Qingling Huang, Rui Zhang, +7 authors, Hongyi Liu.
PLoS One, 2014 Apr 10; 9(4). PMID: 24714669    Free PMC article.
Altered network topologies and hub organization in adults with autism: a resting-state fMRI study.
Takashi Itahashi, Takashi Yamada, +6 authors, Ryuichiro Hashimoto.
PLoS One, 2014 Apr 10; 9(4). PMID: 24714805    Free PMC article.
Simple molecules as complex systems.
Tibor Furtenbacher, Péter Arendás, Georg Mellau, Attila G Császár.
Sci Rep, 2014 Apr 12; 4. PMID: 24722221    Free PMC article.
Evolution of the human brain: when bigger is better.
Michel A Hofman.
Front Neuroanat, 2014 Apr 12; 8. PMID: 24723857    Free PMC article.
Review.
Understanding genetic variation - the value of systems biology.
Marc-Thorsten Hütt.
Br J Clin Pharmacol, 2014 Apr 15; 77(4). PMID: 24725073    Free PMC article.
Review.
Mapping physician Twitter networks: describing how they work as a first step in understanding connectivity, information flow, and message diffusion.
Ranit Mishori, Lisa Oberoi Singh, Brendan Levy, Calvin Newport.
J Med Internet Res, 2014 Apr 16; 16(4). PMID: 24733146    Free PMC article.
Disrupted structural and functional brain connectomes in mild cognitive impairment and Alzheimer's disease.
Zhengjia Dai, Yong He.
Neurosci Bull, 2014 Apr 16; 30(2). PMID: 24733652    Free PMC article.
Review.
Small modifications to network topology can induce stochastic bistable spiking dynamics in a balanced cortical model.
Mark D McDonnell, Lawrence M Ward.
PLoS One, 2014 Apr 20; 9(4). PMID: 24743633    Free PMC article.
Homeostatic structural plasticity increases the efficiency of small-world networks.
Markus Butz, Ines D Steenbuck, Arjen van Ooyen.
Front Synaptic Neurosci, 2014 Apr 20; 6. PMID: 24744727    Free PMC article.
Structural controllability and controlling centrality of temporal networks.
Yujian Pan, Xiang Li.
PLoS One, 2014 Apr 22; 9(4). PMID: 24747676    Free PMC article.
Undersampled critical branching processes on small-world and random networks fail to reproduce the statistics of spike avalanches.
Tiago L Ribeiro, Sidarta Ribeiro, +2 authors, Mauro Copelli.
PLoS One, 2014 Apr 23; 9(4). PMID: 24751599    Free PMC article.
Adaptive cluster synchronization of directed complex networks with time delays.
Heng Liu, Xingyuan Wang, Guozhen Tan.
PLoS One, 2014 Apr 26; 9(4). PMID: 24763228    Free PMC article.
Emergence of blind areas in information spreading.
Zi-Ke Zhang, Chu-Xu Zhang, Xiao-Pu Han, Chuang Liu.
PLoS One, 2014 Apr 26; 9(4). PMID: 24763456    Free PMC article.
Network analysis of perception-action coupling in infants.
Naama Rotem-Kohavi, Courtney G E Hilderman, +3 authors, Naznin Vi